Unigene CC454_v2 SSRs with in silico polymorphism

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The SSR finding software has flagged some sequences with a * because they have some evidence that they are "polymorphic" based on the underlying alignments of the contigs. The software looks for one of four characteristics: a 2bp or larger gap in consensus sequence in SSR region, multiple 1bp gaps in consensus sequence in SSR region, a gap at either end of consensus with another repeat of the motif at corresponding region of an underlying sequence, a gap of 2bp or more in an underlying sequence. Additionally, these sequences have enough flaking sequence to have primers that amplify the SSR region.
CC454_contig11124_v2_1126
CC454_contig13683_v2_43
CC454_contig14253_v2_261
CC454_contig15044_v2_160
CC454_contig1556_v2_162
CC454_contig15991_v2_267
CC454_contig1616_v2_58
CC454_contig17481_v2_724
CC454_contig18505_v2_79
CC454_contig1868_v2_186
CC454_contig19043_v2_461
CC454_contig1913_v2_473
CC454_contig19956_v2_132
CC454_contig1999_v2_271
CC454_contig20123_v2_61
CC454_contig20365_v2_68
CC454_contig20376_v2_210
CC454_contig20376_v2_475
CC454_contig20385_v2_105
CC454_contig20397_v2_80
CC454_contig20469_v2_213
CC454_contig20548_v2_110
CC454_contig20590_v2_504
CC454_contig21777_v2_289
CC454_contig2199_v2_503
CC454_contig2199_v2_515
CC454_contig2199_v2_133
CC454_contig22318_v2_409
CC454_contig2236_v2_1061
CC454_contig22560_v2_88
CC454_contig2356_v2_451
CC454_contig2498_v2_83
CC454_contig25343_v2_166
CC454_contig25692_v2_1488
CC454_contig25692_v2_1500
CC454_contig25809_v2_1135
CC454_contig26433_v2_62
CC454_contig26554_v2_56
CC454_contig28054_v2_105
CC454_contig295_v2_161
CC454_contig30221_v2_300
CC454_contig30250_v2_302
CC454_contig30475_v2_178
CC454_contig30476_v2_199
CC454_contig32054_v2_734
CC454_contig32476_v2_387
CC454_contig32647_v2_220
CC454_contig32665_v2_679
CC454_contig32816_v2_92
CC454_contig33377_v2_368
CC454_contig33462_v2_196
CC454_contig33462_v2_260
CC454_contig33628_v2_141
CC454_contig3405_v2_442
CC454_contig353_v2_235
CC454_contig3586_v2_116
CC454_contig3852_v2_383
CC454_contig3916_v2_98
CC454_contig39388_v2_1325
CC454_contig40944_v2_156
CC454_contig40985_v2_50
CC454_contig41051_v2_692
CC454_contig41333_v2_534
CC454_contig41408_v2_335
CC454_contig41432_v2_167
CC454_contig41576_v2_45
CC454_contig41642_v2_80
CC454_contig41653_v2_310
CC454_contig41671_v2_667
CC454_contig4192_v2_442
CC454_contig42194_v2_465
CC454_contig42377_v2_551
CC454_contig4281_v2_86
CC454_contig4299_v2_476
CC454_contig43175_v2_378
CC454_contig43247_v2_656
CC454_contig43623_v2_17
CC454_contig43640_v2_77
CC454_contig43758_v2_1089
CC454_contig44183_v2_952
CC454_contig4458_v2_764
CC454_contig45329_v2_364
CC454_contig45516_v2_229
CC454_contig46220_v2_120
CC454_contig46245_v2_207
CC454_contig46280_v2_195
CC454_contig46920_v2_34
CC454_contig47088_v2_609
CC454_contig47634_v2_409
CC454_contig4907_v2_1444
CC454_contig6282_v2_1056
CC454_contig7029_v2_560
CC454_contig7207_v2_775
CC454_contig7296_v2_505
CC454_contig8162_v2_118
CC454_contig9044_v2_437


Previously Mapped Contigs

These were determined by BLASTing the primer products from the markers to the contigs. Any matches of at least E value 1e-30 were flagged as a matchCC454_contig10072_v2_983 matches ssr459
CC454_contig10072_v2_1036 matches ssr459
CC454_contig10072_v2_1048 matches ssr459
CC454_contig10072_v2_1193 matches ssr459
CC454_contig10080_v2_3012 matches ssr349
CC454_contig10080_v2_3280 matches ssr349
CC454_contig10080_v2_310 matches ssr349
CC454_contig10080_v2_382 matches ssr349
CC454_contig10080_v2_3164 matches ssr349
CC454_contig10080_v2_2845 matches ssr349
CC454_contig10153_v2_2268 matches ssr306
CC454_contig10225_v2_60 matches ssr267
CC454_contig10225_v2_313 matches ssr267
CC454_contig10225_v2_326 matches ssr267
CC454_contig10271_v2_8 matches ssr620
CC454_contig10271_v2_55 matches ssr620
CC454_contig10284_v2_1 matches ssr497
CC454_contig10284_v2_635 matches ssr497
CC454_contig10334_v2_1970 matches ssr270
CC454_contig10334_v2_1766 matches ssr270
CC454_contig10412_v2_10 matches ssr265
CC454_contig10549_v2_269 matches CmSI0045
CC454_contig10549_v2_288 matches CmSI0045
CC454_contig10556_v2_233 matches ssr526
CC454_contig10556_v2_118 matches ssr526
CC454_contig10596_v2_53 matches ssr362
CC454_contig10596_v2_556 matches ssr362
CC454_contig10596_v2_577 matches ssr362
CC454_contig10669_v2_522 matches ssr493
CC454_contig10669_v2_537 matches ssr493
CC454_contig10669_v2_2082 matches ssr493
CC454_contig10700_v2_381 matches ssr174
CC454_contig10787_v2_1147 matches ssr316
CC454_contig10794_v2_750 matches CmSI0009
CC454_contig10888_v2_995 matches ssr389
CC454_contig10888_v2_134 matches ssr389
CC454_contig10973_v2_887 matches ssr360
CC454_contig11196_v2_693 matches ssr542
CC454_contig11196_v2_180 matches ssr542
CC454_contig11288_v2_43 matches ssr617
CC454_contig11372_v2_144 matches ssr540
CC454_contig11467_v2_283 matches ssr592
CC454_contig11468_v2_206 matches ssr592
CC454_contig11469_v2_38 matches CmSI0027
CC454_contig11469_v2_68 matches CmSI0027
CC454_contig11600_v2_268 matches ssr562
CC454_contig11689_v2_67 matches ssr535
CC454_contig11689_v2_964 matches ssr535
CC454_contig1168_v2_89 matches ssr146
CC454_contig1189_v2_294 matches ssr287
CC454_contig12136_v2_1277 matches ssr493
CC454_contig12136_v2_1376 matches ssr493
CC454_contig12136_v2_1724 matches ssr493
CC454_contig12136_v2_1954 matches ssr493
CC454_contig12136_v2_2098 matches ssr493
CC454_contig12136_v2_2552 matches ssr493
CC454_contig12136_v2_2617 matches ssr493
CC454_contig12136_v2_2664 matches ssr493
CC454_contig1221_v2_72 matches ssr220
CC454_contig1221_v2_792 matches ssr220
CC454_contig1258_v2_523 matches ssr505
CC454_contig1258_v2_877 matches ssr505
CC454_contig1258_v2_1061 matches ssr505
CC454_contig1258_v2_233 matches ssr505
CC454_contig1258_v2_210 matches ssr505
CC454_contig12679_v2_266 matches ssr292
CC454_contig12679_v2_38 matches ssr292
CC454_contig12922_v2_2812 matches ssr590
CC454_contig12922_v2_196 matches ssr590
CC454_contig1324_v2_61 matches ssr596
CC454_contig1324_v2_86 matches ssr596
CC454_contig1324_v2_109 matches ssr596
CC454_contig1324_v2_162 matches ssr596
CC454_contig13327_v2_82 matches ssr291
CC454_contig13531_v2_14 matches ssr417
CC454_contig13570_v2_2 matches ssr395
CC454_contig13570_v2_32 matches ssr395
CC454_contig13570_v2_58 matches ssr395
CC454_contig13570_v2_1350 matches ssr395
CC454_contig13570_v2_2255 matches ssr395
CC454_contig13570_v2_268 matches ssr395
CC454_contig13570_v2_733 matches ssr395
CC454_contig13627_v2_1 matches ssr295
CC454_contig13627_v2_51 matches ssr295
CC454_contig13627_v2_94 matches ssr295
CC454_contig13627_v2_269 matches ssr295
CC454_contig1371_v2_792 matches ssr356
CC454_contig138_v2_971 matches ssr145
CC454_contig138_v2_1008 matches ssr145
CC454_contig14007_v2_140 matches ssr225
CC454_contig14087_v2_585 matches ssr122
CC454_contig1410_v2_294 matches CmSI0056
CC454_contig14320_v2_934 matches CmSI0045
CC454_contig14320_v2_947 matches CmSI0045
CC454_contig14320_v2_1002 matches CmSI0045
CC454_contig1438_v2_80 matches ssr343
CC454_contig1438_v2_342 matches ssr343
CC454_contig1444_v2_431 matches ssr351
CC454_contig144_v2_1314 matches ssr437
CC454_contig14528_v2_26 matches ssr344
CC454_contig14528_v2_222 matches ssr344
CC454_contig14528_v2_1782 matches ssr344
CC454_contig14580_v2_664 matches ssr312
CC454_contig1488_v2_50 matches ssr478
CC454_contig1488_v2_688 matches ssr478
CC454_contig14924_v2_35 matches ssr365
CC454_contig15120_v2_426 matches ssr410
CC454_contig15225_v2_1520 matches ssr260
CC454_contig15225_v2_61 matches ssr260
CC454_contig15225_v2_371 matches ssr260
CC454_contig15225_v2_539 matches ssr260
CC454_contig15526_v2_45 matches ssr146
CC454_contig15726_v2_1019 matches ssr391
CC454_contig15726_v2_1113 matches ssr391
CC454_contig15982_v2_780 matches ssr532
CC454_contig16135_v2_80 matches ssr262
CC454_contig1667_v2_237 matches ssr570
CC454_contig16718_v2_844 matches ssr392
CC454_contig16863_v2_261 matches ssr155
CC454_contig16863_v2_384 matches ssr155
CC454_contig16949_v2_268 matches CmSI0069
CC454_contig17106_v2_347 matches ssr120
CC454_contig17248_v2_232 matches ssr635
CC454_contig17256_v2_1207 matches ssr630
CC454_contig17352_v2_1179 matches ssr317
CC454_contig1735_v2_1840 matches ssr612
CC454_contig1735_v2_389 matches ssr612
CC454_contig1735_v2_1776 matches ssr612
CC454_contig173_v2_14 matches ssr403
CC454_contig173_v2_358 matches ssr403
CC454_contig17403_v2_509 matches ssr493
CC454_contig17490_v2_553 matches CmSI0006
CC454_contig1751_v2_1472 matches ssr293
CC454_contig1751_v2_1488 matches ssr293
CC454_contig1751_v2_1549 matches ssr293
CC454_contig1751_v2_520 matches ssr293
CC454_contig17529_v2_66 matches ssr565
CC454_contig17529_v2_77 matches ssr565
CC454_contig17529_v2_1426 matches ssr565
CC454_contig17714_v2_129 matches ssr326
CC454_contig17714_v2_1024 matches ssr326
CC454_contig17724_v2_2055 matches ssr458
CC454_contig17846_v2_1703 matches ssr504
CC454_contig17846_v2_1728 matches ssr504
CC454_contig17846_v2_1467 matches ssr504
CC454_contig17846_v2_351 matches ssr504
CC454_contig17940_v2_1284 matches ssr427
CC454_contig17940_v2_1326 matches ssr427
CC454_contig1800_v2_780 matches ssr324
CC454_contig18151_v2_827 matches ssr253
CC454_contig18222_v2_769 matches ssr537
CC454_contig18498_v2_403 matches ssr194
CC454_contig18583_v2_334 matches ssr143
CC454_contig18583_v2_68 matches ssr143
CC454_contig18977_v2_253 matches CmSI0028
CC454_contig18987_v2_520 matches ssr493
CC454_contig19079_v2_338 matches ssr541
CC454_contig19410_v2_1661 matches ssr620
CC454_contig1949_v2_820 matches ssr546
CC454_contig19603_v2_1824 matches ssr339
CC454_contig19636_v2_5 matches ssr620
CC454_contig19675_v2_410 matches ssr386
CC454_contig19675_v2_539 matches ssr386
CC454_contig19675_v2_683 matches ssr386
CC454_contig19675_v2_872 matches ssr386
CC454_contig19675_v2_947 matches ssr386
CC454_contig19675_v2_991 matches ssr386
CC454_contig19675_v2_1018 matches ssr386
CC454_contig19675_v2_1066 matches ssr386
CC454_contig19675_v2_1102 matches ssr386
CC454_contig19675_v2_1180 matches ssr386
CC454_contig19675_v2_1264 matches ssr386
CC454_contig19675_v2_1340 matches ssr386
CC454_contig19795_v2_1002 matches ssr500
CC454_contig19795_v2_877 matches ssr500
CC454_contig20177_v2_1289 matches ssr155
CC454_contig20253_v2_1145 matches ssr313
CC454_contig202_v2_241 matches ssr627
CC454_contig202_v2_1243 matches ssr627
CC454_contig202_v2_1553 matches ssr627
CC454_contig202_v2_1643 matches ssr627
CC454_contig2031_v2_179 matches ssr265
CC454_contig20374_v2_353 matches ssr450
CC454_contig20374_v2_519 matches ssr450
CC454_contig20374_v2_231 matches ssr450
CC454_contig20374_v2_399 matches ssr450
CC454_contig20374_v2_452 matches ssr450
CC454_contig20446_v2_107 matches ssr179
CC454_contig20551_v2_957 matches ssr336
CC454_contig20551_v2_833 matches ssr336
CC454_contig20551_v2_969 matches ssr336
CC454_contig20617_v2_996 matches ssr263
CC454_contig20617_v2_1107 matches ssr263
CC454_contig20795_v2_508 matches ssr373
CC454_contig20795_v2_1573 matches ssr373
CC454_contig20795_v2_946 matches ssr373
CC454_contig20897_v2_850 matches ssr399
CC454_contig20897_v2_909 matches ssr399
CC454_contig21105_v2_58 matches ssr561
CC454_contig21105_v2_5 matches ssr561
CC454_contig21212_v2_16 matches ssr455
CC454_contig21212_v2_1 matches ssr455
CC454_contig21212_v2_28 matches ssr455
CC454_contig2128_v2_9 matches ssr539
CC454_contig21385_v2_1 matches ssr533
CC454_contig21385_v2_55 matches ssr533
CC454_contig21385_v2_199 matches ssr533
CC454_contig21432_v2_12 matches ssr183
CC454_contig2144_v2_1 matches ssr147
CC454_contig2144_v2_79 matches ssr147
CC454_contig21599_v2_47 matches ssr381
CC454_contig21653_v2_1199 matches ssr621
CC454_contig21653_v2_1270 matches ssr621
CC454_contig2175_v2_167 matches ssr184
CC454_contig21969_v2_190 matches ssr375
CC454_contig21969_v2_1001 matches ssr375
CC454_contig22241_v2_1144 matches ssr279
CC454_contig22463_v2_56 matches ssr412
CC454_contig22463_v2_117 matches ssr412
CC454_contig2246_v2_1053 matches ssr435
CC454_contig23150_v2_865 matches ssr358
CC454_contig23157_v2_555 matches ssr566
CC454_contig23157_v2_566 matches ssr566
CC454_contig23226_v2_49 matches ssr528
CC454_contig23794_v2_19 matches ssr217
CC454_contig23794_v2_67 matches ssr217
CC454_contig23794_v2_185 matches ssr217
CC454_contig23794_v2_233 matches ssr217
CC454_contig23794_v2_319 matches ssr217
CC454_contig23794_v2_367 matches ssr217
CC454_contig23794_v2_394 matches ssr217
CC454_contig23794_v2_934 matches ssr217
CC454_contig2390_v2_402 matches ssr279
CC454_contig24382_v2_534 matches ssr493
CC454_contig24382_v2_979 matches ssr493
CC454_contig24395_v2_474 matches ssr111
CC454_contig24395_v2_528 matches ssr111
CC454_contig24530_v2_1406 matches ssr557
CC454_contig24829_v2_263 matches ssr272
CC454_contig24949_v2_538 matches ssr550
CC454_contig25206_v2_29 matches ssr587
CC454_contig25315_v2_122 matches ssr217
CC454_contig25315_v2_197 matches ssr217
CC454_contig25315_v2_242 matches ssr217
CC454_contig25315_v2_275 matches ssr217
CC454_contig25315_v2_338 matches ssr217
CC454_contig25316_v2_45 matches ssr386
CC454_contig25316_v2_239 matches ssr386
CC454_contig25316_v2_285 matches ssr386
CC454_contig25316_v2_359 matches ssr386
CC454_contig25316_v2_395 matches ssr386
CC454_contig25316_v2_585 matches ssr386
CC454_contig25316_v2_662 matches ssr386
CC454_contig25316_v2_698 matches ssr386
CC454_contig25341_v2_333 matches ssr273
CC454_contig25341_v2_103 matches ssr273
CC454_contig2545_v2_949 matches ssr558
CC454_contig2582_v2_1130 matches ssr422
CC454_contig2582_v2_1101 matches ssr422
CC454_contig25982_v2_1 matches ssr290
CC454_contig25982_v2_72 matches ssr290
CC454_contig25982_v2_216 matches ssr290
CC454_contig25982_v2_403 matches ssr290
CC454_contig26154_v2_44 matches CmSI0013
CC454_contig26258_v2_52 matches ssr478
CC454_contig26258_v2_84 matches ssr478
CC454_contig26347_v2_1068 matches ssr154
CC454_contig26421_v2_617 matches EMCs4
CC454_contig26451_v2_414 matches ssr202
CC454_contig2668_v2_1214 matches ssr355
CC454_contig26796_v2_175 matches ssr217
CC454_contig26796_v2_223 matches ssr217
CC454_contig26796_v2_271 matches ssr217
CC454_contig26796_v2_337 matches ssr217
CC454_contig26796_v2_385 matches ssr217
CC454_contig26796_v2_499 matches ssr217
CC454_contig26796_v2_547 matches ssr217
CC454_contig26796_v2_658 matches ssr217
CC454_contig26796_v2_766 matches ssr217
CC454_contig26796_v2_814 matches ssr217
CC454_contig26796_v2_862 matches ssr217
CC454_contig26796_v2_900 matches ssr217
CC454_contig26796_v2_928 matches ssr217
CC454_contig26796_v2_976 matches ssr217
CC454_contig26796_v2_1012 matches ssr217
CC454_contig26796_v2_1042 matches ssr217
CC454_contig26796_v2_1090 matches ssr217
CC454_contig26965_v2_11 matches ssr211
CC454_contig27500_v2_169 matches ssr639
CC454_contig27500_v2_358 matches ssr639
CC454_contig27500_v2_398 matches ssr639
CC454_contig27500_v2_237 matches ssr639
CC454_contig27781_v2_2135 matches ssr257
CC454_contig27781_v2_2177 matches ssr257
CC454_contig28141_v2_1296 matches ssr116
CC454_contig28794_v2_663 matches ssr254
CC454_contig28794_v2_3650 matches ssr254
CC454_contig28794_v2_2852 matches ssr254
CC454_contig28794_v2_2909 matches ssr254
CC454_contig28794_v2_3030 matches ssr254
CC454_contig28809_v2_135 matches ssr512
CC454_contig2887_v2_462 matches ssr279
CC454_contig2887_v2_498 matches ssr279
CC454_contig2887_v2_434 matches ssr279
CC454_contig28928_v2_1106 matches ssr142
CC454_contig29539_v2_9 matches ssr322
CC454_contig29539_v2_75 matches ssr322
CC454_contig29736_v2_829 matches ssr208
CC454_contig29736_v2_1078 matches ssr208
CC454_contig29736_v2_1198 matches ssr208
CC454_contig29898_v2_1 matches ssr312
CC454_contig29898_v2_1634 matches ssr312
CC454_contig30126_v2_50 matches ssr265
CC454_contig30839_v2_51 matches ssr233
CC454_contig31035_v2_213 matches ssr414
CC454_contig31035_v2_512 matches ssr414
CC454_contig31035_v2_608 matches ssr414
CC454_contig31403_v2_492 matches ssr217
CC454_contig31403_v2_567 matches ssr217
CC454_contig31403_v2_612 matches ssr217
CC454_contig31403_v2_672 matches ssr217
CC454_contig31403_v2_825 matches ssr217
CC454_contig31403_v2_873 matches ssr217
CC454_contig31403_v2_921 matches ssr217
CC454_contig31403_v2_987 matches ssr217
CC454_contig31403_v2_1035 matches ssr217
CC454_contig31403_v2_1084 matches ssr217
CC454_contig31403_v2_1161 matches ssr217
CC454_contig315_v2_104 matches ssr260
CC454_contig3167_v2_789 matches ssr300
CC454_contig31714_v2_1 matches ssr339
CC454_contig3172_v2_3469 matches ssr118
CC454_contig31855_v2_123 matches CmSI0091
CC454_contig32075_v2_450 matches ssr252
CC454_contig3207_v2_686 matches ssr185
CC454_contig3207_v2_567 matches ssr185
CC454_contig3207_v2_720 matches ssr185
CC454_contig3214_v2_735 matches CmSI0009
CC454_contig32151_v2_112 matches CmSI0027
CC454_contig32151_v2_165 matches CmSI0027
CC454_contig32151_v2_119 matches CmSI0027
CC454_contig32359_v2_291 matches ssr169
CC454_contig32486_v2_406 matches ssr237
CC454_contig32486_v2_482 matches ssr237
CC454_contig32525_v2_222 matches ssr415
CC454_contig32568_v2_217 matches ssr300
CC454_contig32664_v2_143 matches ssr599
CC454_contig3370_v2_1320 matches ssr591
CC454_contig3370_v2_1260 matches ssr591
CC454_contig3384_v2_44 matches ssr487
CC454_contig33971_v2_1407 matches ssr520
CC454_contig34032_v2_785 matches CmSI0003
CC454_contig342_v2_249 matches ssr415
CC454_contig342_v2_542 matches ssr415
CC454_contig3467_v2_2555 matches ssr177
CC454_contig34787_v2_89 matches ssr386
CC454_contig35612_v2_184 matches ssr506
CC454_contig35993_v2_291 matches ssr386
CC454_contig35993_v2_339 matches ssr386
CC454_contig35993_v2_385 matches ssr386
CC454_contig35993_v2_459 matches ssr386
CC454_contig35993_v2_495 matches ssr386
CC454_contig35993_v2_594 matches ssr386
CC454_contig3606_v2_1403 matches ssr408
CC454_contig36193_v2_7 matches ssr125
CC454_contig36193_v2_28 matches ssr125
CC454_contig36193_v2_339 matches ssr125
CC454_contig36193_v2_361 matches ssr125
CC454_contig3692_v2_432 matches ssr331
CC454_contig37231_v2_121 matches ssr493
CC454_contig37231_v2_988 matches ssr493
CC454_contig3732_v2_1 matches ssr386
CC454_contig3732_v2_235 matches ssr386
CC454_contig3732_v2_336 matches ssr386
CC454_contig3732_v2_483 matches ssr386
CC454_contig3732_v2_687 matches ssr386
CC454_contig3732_v2_735 matches ssr386
CC454_contig3732_v2_762 matches ssr386
CC454_contig3732_v2_810 matches ssr386
CC454_contig3732_v2_972 matches ssr386
CC454_contig3732_v2_1029 matches ssr386
CC454_contig3732_v2_1056 matches ssr386
CC454_contig37621_v2_180 matches ssr642
CC454_contig37621_v2_3 matches ssr642
CC454_contig37621_v2_24 matches ssr642
CC454_contig378_v2_152 matches CmSI0024
CC454_contig38904_v2_29 matches ssr599
CC454_contig38947_v2_1606 matches ssr493
CC454_contig38978_v2_1309 matches ssr237
CC454_contig38980_v2_1063 matches ssr493
CC454_contig38980_v2_1117 matches ssr493
CC454_contig3900_v2_153 matches ssr615
CC454_contig39058_v2_1074 matches ssr571
CC454_contig39071_v2_1169 matches ssr271
CC454_contig39071_v2_402 matches ssr271
CC454_contig39151_v2_253 matches ssr306
CC454_contig39166_v2_51 matches ssr477
CC454_contig3918_v2_146 matches ssr405
CC454_contig39246_v2_191 matches ssr596
CC454_contig3925_v2_863 matches ssr441
CC454_contig3925_v2_920 matches ssr441
CC454_contig3925_v2_593 matches ssr441
CC454_contig39342_v2_1226 matches ssr433
CC454_contig3958_v2_481 matches ssr327
CC454_contig39642_v2_14 matches ssr357
CC454_contig39642_v2_546 matches ssr357
CC454_contig39736_v2_257 matches ssr291
CC454_contig39862_v2_636 matches ssr556
CC454_contig39862_v2_680 matches ssr556
CC454_contig39862_v2_605 matches ssr556
CC454_contig39880_v2_71 matches ssr127
CC454_contig39899_v2_7 matches ssr192
CC454_contig39949_v2_1625 matches ssr278
CC454_contig39949_v2_1588 matches ssr278
CC454_contig39_v2_104 matches ssr512
CC454_contig39_v2_159 matches ssr512
CC454_contig39_v2_3915 matches ssr512
CC454_contig39_v2_4276 matches ssr512
CC454_contig39_v2_3612 matches ssr512
CC454_contig40052_v2_713 matches ssr117
CC454_contig40052_v2_1205 matches ssr117
CC454_contig40343_v2_333 matches ssr484
CC454_contig40490_v2_386 matches ssr211
CC454_contig40524_v2_58 matches ssr468
CC454_contig40525_v2_696 matches ssr493
CC454_contig4055_v2_331 matches ssr267
CC454_contig4067_v2_230 matches ssr348
CC454_contig4067_v2_384 matches ssr348
CC454_contig4067_v2_396 matches ssr348
CC454_contig4067_v2_413 matches ssr348
CC454_contig4077_v2_206 matches ssr170
CC454_contig4103_v2_924 matches ssr199
CC454_contig4103_v2_464 matches ssr199
CC454_contig41145_v2_388 matches ssr132
CC454_contig41150_v2_88 matches ssr339
CC454_contig41193_v2_1549 matches ssr195
CC454_contig41361_v2_28 matches ssr510
CC454_contig41370_v2_1074 matches ssr352
CC454_contig41370_v2_1090 matches ssr352
CC454_contig41370_v2_809 matches ssr352
CC454_contig41370_v2_173 matches ssr352
CC454_contig41481_v2_219 matches ssr252
CC454_contig41528_v2_450 matches ssr164
CC454_contig41603_v2_1 matches ssr335
CC454_contig41668_v2_250 matches ssr369
CC454_contig41779_v2_183 matches ssr477
CC454_contig41779_v2_1356 matches ssr477
CC454_contig41779_v2_1553 matches ssr477
CC454_contig41819_v2_1 matches ssr619
CC454_contig41845_v2_799 matches ssr258
CC454_contig42211_v2_1898 matches ssr171
CC454_contig42211_v2_8789 matches ssr171
CC454_contig42211_v2_4627 matches ssr171
CC454_contig42248_v2_184 matches CmSI0051
CC454_contig42248_v2_93 matches CmSI0051
CC454_contig42251_v2_108 matches ssr242
CC454_contig42251_v2_2784 matches ssr242
CC454_contig4233_v2_341 matches ssr441
CC454_contig4233_v2_551 matches ssr441
CC454_contig4233_v2_608 matches ssr441
CC454_contig42628_v2_224 matches ssr531
CC454_contig42628_v2_461 matches ssr531
CC454_contig42696_v2_51 matches ssr493
CC454_contig42709_v2_704 matches ssr365
CC454_contig42709_v2_657 matches ssr365
CC454_contig4302_v2_370 matches ssr259
CC454_contig43050_v2_685 matches ssr109
CC454_contig43050_v2_698 matches ssr109
CC454_contig43050_v2_737 matches ssr109
CC454_contig43050_v2_750 matches ssr109
CC454_contig4311_v2_5384 matches ssr255
CC454_contig4311_v2_6995 matches ssr255
CC454_contig43163_v2_968 matches ssr627
CC454_contig43245_v2_638 matches ssr411
CC454_contig43245_v2_82 matches ssr411
CC454_contig4325_v2_36 matches ssr473
CC454_contig43626_v2_498 matches ssr176
CC454_contig43760_v2_163 matches ssr607
CC454_contig43942_v2_71 matches ssr351
CC454_contig43942_v2_140 matches ssr351
CC454_contig43942_v2_593 matches ssr351
CC454_contig43942_v2_987 matches ssr351
CC454_contig44061_v2_1654 matches ssr148
CC454_contig44061_v2_1801 matches ssr148
CC454_contig44061_v2_2122 matches ssr148
CC454_contig44173_v2_94 matches ssr493
CC454_contig44173_v2_125 matches ssr493
CC454_contig44173_v2_442 matches ssr493
CC454_contig44253_v2_91 matches ssr400
CC454_contig44412_v2_403 matches ssr260
CC454_contig44412_v2_419 matches ssr260
CC454_contig44615_v2_532 matches ssr145
CC454_contig4465_v2_6 matches CmSI0007
CC454_contig44674_v2_2341 matches ssr625
CC454_contig44674_v2_1363 matches ssr625
CC454_contig44744_v2_1 matches ssr493
CC454_contig44745_v2_78 matches ssr493
CC454_contig447_v2_35 matches ssr218
CC454_contig447_v2_91 matches ssr218
CC454_contig45004_v2_123 matches ssr217
CC454_contig45004_v2_201 matches ssr217
CC454_contig45004_v2_249 matches ssr217
CC454_contig45307_v2_76 matches ssr408
CC454_contig45307_v2_1317 matches ssr408
CC454_contig45529_v2_412 matches ssr250
CC454_contig45562_v2_421 matches ssr144
CC454_contig45562_v2_511 matches ssr144
CC454_contig45562_v2_1102 matches ssr144
CC454_contig45794_v2_1192 matches ssr406
CC454_contig45794_v2_464 matches ssr406
CC454_contig45922_v2_1389 matches ssr306
CC454_contig46101_v2_164 matches ssr271
CC454_contig4632_v2_1412 matches ssr169
CC454_contig4632_v2_1317 matches ssr169
CC454_contig46334_v2_289 matches ssr411
CC454_contig46372_v2_1015 matches ssr287
CC454_contig46433_v2_313 matches ssr536
CC454_contig46732_v2_160 matches ssr380
CC454_contig46732_v2_1229 matches ssr380
CC454_contig46907_v2_89 matches ssr577
CC454_contig46907_v2_68 matches ssr577
CC454_contig46916_v2_166 matches ssr365
CC454_contig46916_v2_215 matches ssr365
CC454_contig4702_v2_766 matches ssr493
CC454_contig47177_v2_136 matches ssr562
CC454_contig47237_v2_958 matches ssr134
CC454_contig47391_v2_222 matches ssr493
CC454_contig47419_v2_56 matches ssr186
CC454_contig47429_v2_49 matches ssr493
CC454_contig47495_v2_1051 matches ssr173
CC454_contig47572_v2_55 matches ssr248
CC454_contig47608_v2_110 matches ssr123
CC454_contig4781_v2_143 matches ssr351
CC454_contig47919_v2_320 matches ssr617
CC454_contig47919_v2_346 matches ssr617
CC454_contig48018_v2_82 matches ssr193
CC454_contig48304_v2_885 matches ssr488
CC454_contig48331_v2_166 matches ssr386
CC454_contig48331_v2_212 matches ssr386
CC454_contig48331_v2_244 matches ssr386
CC454_contig48331_v2_264 matches ssr386
CC454_contig48385_v2_49 matches ssr150
CC454_contig48385_v2_1022 matches ssr150
CC454_contig530_v2_457 matches ssr411
CC454_contig530_v2_24 matches ssr411
CC454_contig5316_v2_268 matches ssr390
CC454_contig5326_v2_1195 matches CmSI0050
CC454_contig5326_v2_132 matches CmSI0050
CC454_contig5326_v2_687 matches CmSI0050
CC454_contig5345_v2_80 matches ssr136
CC454_contig5345_v2_109 matches ssr136
CC454_contig5366_v2_49 matches ssr339
CC454_contig5367_v2_5 matches ssr339
CC454_contig5478_v2_49 matches ssr353
CC454_contig5478_v2_60 matches ssr353
CC454_contig5478_v2_373 matches ssr353
CC454_contig5512_v2_1402 matches ssr279
CC454_contig556_v2_391 matches ssr554
CC454_contig556_v2_787 matches ssr554
CC454_contig5951_v2_1667 matches ssr188
CC454_contig5951_v2_1679 matches ssr188
CC454_contig5_v2_71 matches ssr236
CC454_contig6225_v2_232 matches ssr493
CC454_contig6301_v2_782 matches ssr308
CC454_contig6352_v2_7 matches ssr333
CC454_contig6352_v2_2422 matches ssr333
CC454_contig6496_v2_71 matches ssr428
CC454_contig6558_v2_277 matches ssr245
CC454_contig6574_v2_1796 matches ssr274
CC454_contig6574_v2_2153 matches ssr274
CC454_contig6576_v2_1904 matches ssr313
CC454_contig6576_v2_1833 matches ssr313
CC454_contig6725_v2_11 matches ssr413
CC454_contig6725_v2_746 matches ssr413
CC454_contig6743_v2_777 matches ssr174
CC454_contig6943_v2_136 matches ssr173
CC454_contig6984_v2_368 matches ssr300
CC454_contig6984_v2_380 matches ssr300
CC454_contig7016_v2_330 matches EMCs13
CC454_contig7055_v2_1482 matches ssr603
CC454_contig7055_v2_1591 matches ssr603
CC454_contig7055_v2_1166 matches ssr603
CC454_contig7055_v2_109 matches ssr603
CC454_contig7115_v2_383 matches ssr426
CC454_contig7455_v2_876 matches ssr140
CC454_contig7576_v2_924 matches ssr586
CC454_contig7578_v2_125 matches EMCs4
CC454_contig7645_v2_782 matches ssr304
CC454_contig7706_v2_92 matches ssr582
CC454_contig7706_v2_1433 matches ssr582
CC454_contig7706_v2_1395 matches ssr582
CC454_contig7720_v2_1270 matches ssr368
CC454_contig7720_v2_1323 matches ssr368
CC454_contig7720_v2_447 matches ssr368
CC454_contig7722_v2_41 matches ssr429
CC454_contig7865_v2_340 matches ssr216
CC454_contig7865_v2_353 matches ssr216
CC454_contig7865_v2_371 matches ssr216
CC454_contig7921_v2_433 matches ssr490
CC454_contig7921_v2_758 matches ssr490
CC454_contig8028_v2_344 matches ssr450
CC454_contig8032_v2_432 matches ssr613
CC454_contig8151_v2_119 matches ssr243
CC454_contig8257_v2_40 matches ssr239
CC454_contig8305_v2_130 matches ssr329
CC454_contig8305_v2_65 matches ssr329
CC454_contig8642_v2_128 matches ssr319
CC454_contig8746_v2_1342 matches ssr409
CC454_contig8746_v2_236 matches ssr409
CC454_contig8746_v2_320 matches ssr409
CC454_contig8784_v2_647 matches ssr448
CC454_contig87_v2_211 matches ssr401
CC454_contig895_v2_706 matches ssr174
CC454_contig9045_v2_24 matches ssr383
CC454_contig9045_v2_57 matches ssr383
CC454_contig9179_v2_477 matches CmSI0051
CC454_contig922_v2_1455 matches ssr268
CC454_contig922_v2_802 matches ssr268
CC454_contig9267_v2_245 matches ssr300
CC454_contig938_v2_48 matches ssr468
CC454_contig9419_v2_180 matches ssr193
CC454_contig9686_v2_724 matches ssr238
CC454_contig9686_v2_477 matches ssr238
CC454_contig9778_v2_391 matches ssr281
CC454_contig9778_v2_471 matches ssr281
CC454_contig9808_v2_396 matches ssr323
CC454_contig9808_v2_408 matches ssr323
CC454_contig9854_v2_80 matches ssr336

All Other SSRs

CC454_contig10005_v2_22
CC454_contig10005_v2_795
CC454_contig10006_v2_6
CC454_contig10016_v2_105
CC454_contig1001_v2_1547
CC454_contig10021_v2_332
CC454_contig10029_v2_157
CC454_contig10029_v2_213
CC454_contig10030_v2_94
CC454_contig10032_v2_52
CC454_contig10034_v2_255
CC454_contig10039_v2_56
CC454_contig10046_v2_176
CC454_contig10069_v2_310
CC454_contig1007_v2_1508
CC454_contig10081_v2_529
CC454_contig10087_v2_13
CC454_contig10098_v2_151
CC454_contig10099_v2_337
CC454_contig100_v2_47
CC454_contig10105_v2_1537
CC454_contig1010_v2_373
CC454_contig10117_v2_307
CC454_contig1011_v2_615
CC454_contig1011_v2_356
CC454_contig1011_v2_403
CC454_contig10124_v2_841
CC454_contig10124_v2_890
CC454_contig10125_v2_344
CC454_contig1012_v2_1
CC454_contig1012_v2_75
CC454_contig10130_v2_39
CC454_contig10130_v2_420
CC454_contig1013_v2_269
CC454_contig10140_v2_11
CC454_contig10143_v2_71
CC454_contig10148_v2_34
CC454_contig1014_v2_100
CC454_contig10160_v2_38
CC454_contig10169_v2_87
CC454_contig1016_v2_82
CC454_contig10172_v2_304
CC454_contig10184_v2_159
CC454_contig10187_v2_239
CC454_contig10188_v2_273
CC454_contig10195_v2_1840
CC454_contig1019_v2_257
CC454_contig10206_v2_393
CC454_contig10217_v2_83
CC454_contig10222_v2_711
CC454_contig10223_v2_35
CC454_contig10227_v2_69
CC454_contig10227_v2_101
CC454_contig10236_v2_652
CC454_contig10239_v2_157
CC454_contig10240_v2_181
CC454_contig10243_v2_942
CC454_contig10251_v2_581
CC454_contig10251_v2_549
CC454_contig10261_v2_12
CC454_contig10261_v2_196
CC454_contig10270_v2_1171
CC454_contig10279_v2_94
CC454_contig10282_v2_458
CC454_contig10282_v2_470
CC454_contig10285_v2_511
CC454_contig10285_v2_618
CC454_contig1028_v2_574
CC454_contig10291_v2_51
CC454_contig10299_v2_533
CC454_contig10299_v2_301
CC454_contig10300_v2_184
CC454_contig10306_v2_577
CC454_contig10308_v2_173
CC454_contig10313_v2_848
CC454_contig10318_v2_403
CC454_contig10325_v2_166
CC454_contig10332_v2_53
CC454_contig10341_v2_1639
CC454_contig10368_v2_438
CC454_contig10368_v2_382
CC454_contig10371_v2_456
CC454_contig10382_v2_157
CC454_contig10393_v2_1086
CC454_contig10393_v2_414
CC454_contig10395_v2_272
CC454_contig10398_v2_186
CC454_contig103_v2_377
CC454_contig103_v2_420
CC454_contig103_v2_778
CC454_contig10410_v2_130
CC454_contig10411_v2_219
CC454_contig10415_v2_330
CC454_contig10458_v2_2
CC454_contig10461_v2_1511
CC454_contig10470_v2_318
CC454_contig1047_v2_218
CC454_contig1048_v2_149
CC454_contig10493_v2_1169
CC454_contig10493_v2_1252
CC454_contig10493_v2_1305
CC454_contig10493_v2_1371
CC454_contig10493_v2_1451
CC454_contig10497_v2_632
CC454_contig1049_v2_239
CC454_contig104_v2_116
CC454_contig10505_v2_42
CC454_contig10505_v2_61
CC454_contig10514_v2_430
CC454_contig10517_v2_370
CC454_contig10520_v2_633
CC454_contig1052_v2_106
CC454_contig10530_v2_285
CC454_contig10530_v2_330
CC454_contig10530_v2_418
CC454_contig10530_v2_430
CC454_contig10530_v2_455
CC454_contig10530_v2_138
CC454_contig10530_v2_127
CC454_contig10536_v2_25
CC454_contig10536_v2_38
CC454_contig10536_v2_154
CC454_contig10557_v2_139
CC454_contig10558_v2_65
CC454_contig10558_v2_1949
CC454_contig10558_v2_2004
CC454_contig1055_v2_49
CC454_contig1055_v2_63
CC454_contig10560_v2_85
CC454_contig10564_v2_141
CC454_contig1056_v2_50
CC454_contig1056_v2_93
CC454_contig10572_v2_193
CC454_contig10579_v2_357
CC454_contig10588_v2_1651
CC454_contig10593_v2_22
CC454_contig10598_v2_242
CC454_contig10601_v2_1603
CC454_contig10601_v2_2045
CC454_contig10608_v2_1888
CC454_contig10608_v2_1819
CC454_contig10608_v2_1841
CC454_contig10608_v2_1865
CC454_contig10619_v2_95
CC454_contig10636_v2_286
CC454_contig10636_v2_300
CC454_contig10636_v2_339
CC454_contig10638_v2_71
CC454_contig10638_v2_112
CC454_contig10638_v2_279
CC454_contig10658_v2_340
CC454_contig10665_v2_326
CC454_contig10665_v2_761
CC454_contig10666_v2_110
CC454_contig1066_v2_182
CC454_contig10670_v2_49
CC454_contig10675_v2_1064
CC454_contig10675_v2_1110
CC454_contig10680_v2_217
CC454_contig10680_v2_135
CC454_contig10682_v2_242
CC454_contig10682_v2_255
CC454_contig10684_v2_224
CC454_contig10684_v2_283
CC454_contig10686_v2_25
CC454_contig10688_v2_53
CC454_contig10689_v2_215
CC454_contig1068_v2_304
CC454_contig10690_v2_28
CC454_contig106_v2_215
CC454_contig10702_v2_671
CC454_contig10705_v2_132
CC454_contig10720_v2_455
CC454_contig10735_v2_276
CC454_contig10736_v2_39
CC454_contig10736_v2_154
CC454_contig10737_v2_590
CC454_contig10750_v2_237
CC454_contig10750_v2_204
CC454_contig10763_v2_342
CC454_contig1076_v2_46
CC454_contig10788_v2_1585
CC454_contig10792_v2_349
CC454_contig10793_v2_97
CC454_contig10795_v2_86
CC454_contig10803_v2_2737
CC454_contig10803_v2_167
CC454_contig10808_v2_54
CC454_contig10809_v2_933
CC454_contig10811_v2_538
CC454_contig10814_v2_102
CC454_contig10823_v2_117
CC454_contig10828_v2_40
CC454_contig10830_v2_96
CC454_contig10832_v2_187
CC454_contig10835_v2_136
CC454_contig10835_v2_299
CC454_contig10839_v2_350
CC454_contig1083_v2_304
CC454_contig10842_v2_170
CC454_contig10842_v2_472
CC454_contig10842_v2_428
CC454_contig10846_v2_72
CC454_contig10848_v2_143
CC454_contig1085_v2_5
CC454_contig10861_v2_493
CC454_contig10868_v2_43
CC454_contig10875_v2_167
CC454_contig10875_v2_280
CC454_contig10882_v2_892
CC454_contig10882_v2_914
CC454_contig10901_v2_69
CC454_contig10904_v2_82
CC454_contig10924_v2_3238
CC454_contig10926_v2_258
CC454_contig10929_v2_1412
CC454_contig10939_v2_3
CC454_contig10939_v2_591
CC454_contig10939_v2_990
CC454_contig10942_v2_106
CC454_contig10942_v2_114
CC454_contig10942_v2_189
CC454_contig10942_v2_244
CC454_contig10945_v2_156
CC454_contig10961_v2_1521
CC454_contig10963_v2_112
CC454_contig10968_v2_15
CC454_contig10974_v2_73
CC454_contig10975_v2_78
CC454_contig10980_v2_832
CC454_contig10993_v2_254
CC454_contig10994_v2_1142
CC454_contig10994_v2_1256
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