Unigene AC454_v2 SSRs with in silico polymorphism

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The SSR finding software has flagged some sequences with a * because they have some evidence that they are "polymorphic" based on the underlying alignments of the contigs. The software looks for one of four characteristics: a 2bp or larger gap in consensus sequence in SSR region, multiple 1bp gaps in consensus sequence in SSR region, a gap at either end of consensus with another repeat of the motif at corresponding region of an underlying sequence, a gap of 2bp or more in an underlying sequence. Additionally, these sequences have enough flaking sequence to have primers that amplify the SSR region.
AC454_contig1104_v2_39
AC454_contig12338_v2_224
AC454_contig13017_v2_538
AC454_contig136_v2_108
AC454_contig13719_v2_42
AC454_contig13950_v2_596
AC454_contig14052_v2_631
AC454_contig1447_v2_162
AC454_contig14490_v2_229
AC454_contig15382_v2_336
AC454_contig15512_v2_323
AC454_contig15547_v2_238
AC454_contig15780_v2_295
AC454_contig15780_v2_346
AC454_contig15823_v2_534
AC454_contig16034_v2_56
AC454_contig16084_v2_174
AC454_contig17480_v2_111
AC454_contig19489_v2_221
AC454_contig20930_v2_364
AC454_contig21627_v2_63
AC454_contig21714_v2_139
AC454_contig21944_v2_102
AC454_contig22291_v2_133
AC454_contig2285_v2_161
AC454_contig23043_v2_760
AC454_contig23043_v2_948
AC454_contig23043_v2_1028
AC454_contig2322_v2_87
AC454_contig23564_v2_144
AC454_contig2679_v2_365
AC454_contig278_v2_291
AC454_contig29019_v2_152
AC454_contig29564_v2_313
AC454_contig29818_v2_49
AC454_contig3016_v2_316
AC454_contig30217_v2_122
AC454_contig30246_v2_254
AC454_contig30297_v2_138
AC454_contig30938_v2_296
AC454_contig31072_v2_232
AC454_contig31475_v2_968
AC454_contig32786_v2_111
AC454_contig32941_v2_548
AC454_contig32943_v2_77
AC454_contig33457_v2_89
AC454_contig33480_v2_205
AC454_contig3348_v2_141
AC454_contig33731_v2_197
AC454_contig34226_v2_185
AC454_contig34311_v2_254
AC454_contig34328_v2_265
AC454_contig3931_v2_934
AC454_contig3999_v2_214
AC454_contig3999_v2_313
AC454_contig4105_v2_499
AC454_contig423_v2_1074
AC454_contig4254_v2_185
AC454_contig4950_v2_98
AC454_contig5017_v2_86
AC454_contig5958_v2_265
AC454_contig6054_v2_145
AC454_contig64_v2_444
AC454_contig6539_v2_308
AC454_contig678_v2_872
AC454_contig811_v2_1129
AC454_contig9440_v2_62
AC454_contig94_v2_132
AC454_contig9850_v2_56

All Other SSRs

AC454_contig10005_v2_158
AC454_contig10005_v2_212
AC454_contig10012_v2_16
AC454_contig10014_v2_78
AC454_contig10016_v2_878
AC454_contig10026_v2_269
AC454_contig10027_v2_239
AC454_contig10029_v2_216
AC454_contig10029_v2_247
AC454_contig10030_v2_35
AC454_contig10043_v2_61
AC454_contig10046_v2_55
AC454_contig10063_v2_251
AC454_contig10065_v2_35
AC454_contig10065_v2_155
AC454_contig10068_v2_74
AC454_contig10068_v2_304
AC454_contig10069_v2_306
AC454_contig10071_v2_749
AC454_contig10074_v2_5
AC454_contig10080_v2_78
AC454_contig10081_v2_12
AC454_contig10082_v2_557
AC454_contig10091_v2_142
AC454_contig1009_v2_183
AC454_contig1009_v2_201
AC454_contig10106_v2_274
AC454_contig10107_v2_182
AC454_contig10119_v2_116
AC454_contig10135_v2_36
AC454_contig10143_v2_17
AC454_contig10143_v2_189
AC454_contig10156_v2_120
AC454_contig10161_v2_108
AC454_contig10163_v2_1
AC454_contig10165_v2_22
AC454_contig10217_v2_295
AC454_contig10217_v2_347
AC454_contig10229_v2_383
AC454_contig10238_v2_23
AC454_contig10238_v2_87
AC454_contig10239_v2_7
AC454_contig1025_v2_68
AC454_contig10264_v2_91
AC454_contig10268_v2_10
AC454_contig10281_v2_23
AC454_contig10282_v2_220
AC454_contig10282_v2_64
AC454_contig10289_v2_1030
AC454_contig10289_v2_1050
AC454_contig10289_v2_768
AC454_contig10289_v2_174
AC454_contig10290_v2_24
AC454_contig10293_v2_271
AC454_contig10295_v2_24
AC454_contig10297_v2_239
AC454_contig1029_v2_550
AC454_contig10300_v2_224
AC454_contig10310_v2_344
AC454_contig10310_v2_471
AC454_contig10310_v2_489
AC454_contig10316_v2_290
AC454_contig10316_v2_695
AC454_contig10329_v2_421
AC454_contig10329_v2_439
AC454_contig10329_v2_1152
AC454_contig10329_v2_1494
AC454_contig1033_v2_337
AC454_contig10342_v2_54
AC454_contig10342_v2_106
AC454_contig10344_v2_108
AC454_contig10363_v2_1
AC454_contig10367_v2_619
AC454_contig10389_v2_22
AC454_contig1038_v2_184
AC454_contig1038_v2_227
AC454_contig10392_v2_89
AC454_contig103_v2_47
AC454_contig1041_v2_32
AC454_contig10425_v2_163
AC454_contig10427_v2_154
AC454_contig10433_v2_27
AC454_contig10433_v2_168
AC454_contig10433_v2_201
AC454_contig10439_v2_195
AC454_contig10441_v2_222
AC454_contig10451_v2_187
AC454_contig10453_v2_152
AC454_contig10453_v2_164
AC454_contig10460_v2_9
AC454_contig10460_v2_106
AC454_contig10460_v2_63
AC454_contig10467_v2_38
AC454_contig10473_v2_436
AC454_contig10479_v2_191
AC454_contig10480_v2_8
AC454_contig10482_v2_46
AC454_contig10483_v2_23
AC454_contig10495_v2_95
AC454_contig10500_v2_74
AC454_contig10514_v2_180
AC454_contig10520_v2_135
AC454_contig10525_v2_400
AC454_contig10526_v2_329
AC454_contig10532_v2_64
AC454_contig10536_v2_269
AC454_contig1054_v2_188
AC454_contig10551_v2_443
AC454_contig10592_v2_40
AC454_contig105_v2_2092
AC454_contig10615_v2_260
AC454_contig10616_v2_49
AC454_contig1062_v2_198
AC454_contig10639_v2_171
AC454_contig10640_v2_5
AC454_contig10650_v2_36
AC454_contig10655_v2_197
AC454_contig10661_v2_70
AC454_contig10671_v2_483
AC454_contig10683_v2_321
AC454_contig10684_v2_915
AC454_contig1068_v2_253
AC454_contig10693_v2_130
AC454_contig10693_v2_172
AC454_contig10700_v2_17
AC454_contig10716_v2_256
AC454_contig10719_v2_319
AC454_contig10723_v2_383
AC454_contig10729_v2_163
AC454_contig10742_v2_240
AC454_contig10748_v2_154
AC454_contig10754_v2_255
AC454_contig10756_v2_76
AC454_contig10759_v2_39
AC454_contig10763_v2_268
AC454_contig10766_v2_1
AC454_contig10772_v2_134
AC454_contig1078_v2_137
AC454_contig10794_v2_1891
AC454_contig10806_v2_246
AC454_contig10809_v2_66
AC454_contig10809_v2_22
AC454_contig1080_v2_249
AC454_contig10810_v2_21
AC454_contig10813_v2_732
AC454_contig10826_v2_5
AC454_contig10831_v2_1
AC454_contig10845_v2_264
AC454_contig10856_v2_242
AC454_contig10856_v2_35
AC454_contig10857_v2_1138
AC454_contig10876_v2_6
AC454_contig10881_v2_185
AC454_contig10881_v2_236
AC454_contig10883_v2_1574
AC454_contig10893_v2_64
AC454_contig10898_v2_406
AC454_contig1089_v2_94
AC454_contig1089_v2_86
AC454_contig1089_v2_104
AC454_contig10902_v2_13
AC454_contig10910_v2_94
AC454_contig10917_v2_71
AC454_contig1092_v2_116
AC454_contig10946_v2_130
AC454_contig10955_v2_228
AC454_contig10960_v2_259
AC454_contig10963_v2_3
AC454_contig10963_v2_87
AC454_contig10967_v2_278
AC454_contig10983_v2_176
AC454_contig10985_v2_30
AC454_contig10985_v2_79
AC454_contig1098_v2_21
AC454_contig10991_v2_395
AC454_contig10994_v2_312
AC454_contig109_v2_68
AC454_contig109_v2_366
AC454_contig11000_v2_187
AC454_contig11009_v2_369
AC454_contig11021_v2_14
AC454_contig11023_v2_185
AC454_contig11037_v2_199
AC454_contig1104_v2_48
AC454_contig1104_v2_364
AC454_contig11053_v2_26
AC454_contig11055_v2_56
AC454_contig11084_v2_4
AC454_contig11084_v2_149
AC454_contig11085_v2_1
AC454_contig1108_v2_377
AC454_contig11095_v2_7
AC454_contig11136_v2_306
AC454_contig11137_v2_151
AC454_contig11139_v2_277
AC454_contig11141_v2_1180
AC454_contig11141_v2_1197
AC454_contig11141_v2_286
AC454_contig11142_v2_2
AC454_contig11144_v2_60
AC454_contig11148_v2_146
AC454_contig11149_v2_12
AC454_contig11149_v2_436
AC454_contig11157_v2_622
AC454_contig11157_v2_498
AC454_contig11163_v2_94
AC454_contig11165_v2_489
AC454_contig11165_v2_403
AC454_contig11183_v2_283
AC454_contig11193_v2_305
AC454_contig11194_v2_95
AC454_contig11199_v2_86
AC454_contig1119_v2_109
AC454_contig11209_v2_11
AC454_contig11235_v2_680
AC454_contig11252_v2_113
AC454_contig11252_v2_387
AC454_contig11257_v2_11
AC454_contig11265_v2_40
AC454_contig1126_v2_248
AC454_contig1127_v2_622
AC454_contig1127_v2_405
AC454_contig11285_v2_1282
AC454_contig11286_v2_7
AC454_contig11310_v2_1
AC454_contig11335_v2_18
AC454_contig11335_v2_174
AC454_contig11348_v2_101
AC454_contig11356_v2_373
AC454_contig11359_v2_661
AC454_contig1135_v2_182
AC454_contig1135_v2_244
AC454_contig11376_v2_93
AC454_contig11377_v2_3
AC454_contig11391_v2_4
AC454_contig11391_v2_133
AC454_contig11391_v2_178
AC454_contig11393_v2_7
AC454_contig11399_v2_101
AC454_contig1139_v2_217
AC454_contig11405_v2_113
AC454_contig11407_v2_213
AC454_contig11407_v2_385
AC454_contig11411_v2_375
AC454_contig11419_v2_547
AC454_contig11424_v2_168
AC454_contig11431_v2_76
AC454_contig11434_v2_30
AC454_contig11436_v2_27
AC454_contig11437_v2_84
AC454_contig11441_v2_69
AC454_contig11441_v2_168
AC454_contig11444_v2_273
AC454_contig11464_v2_688
AC454_contig11473_v2_1
AC454_contig11473_v2_16
AC454_contig11478_v2_89
AC454_contig11479_v2_369
AC454_contig11483_v2_294
AC454_contig11484_v2_83
AC454_contig11492_v2_205
AC454_contig11497_v2_887
AC454_contig114_v2_78
AC454_contig11504_v2_249
AC454_contig11507_v2_603
AC454_contig11507_v2_615
AC454_contig11508_v2_210
AC454_contig11508_v2_243
AC454_contig1150_v2_222
AC454_contig11512_v2_43
AC454_contig11513_v2_234
AC454_contig11521_v2_193
AC454_contig11521_v2_288
AC454_contig11527_v2_203
AC454_contig11527_v2_334
AC454_contig11533_v2_188
AC454_contig11546_v2_380
AC454_contig11547_v2_264
AC454_contig11554_v2_68
AC454_contig11556_v2_275
AC454_contig11556_v2_164
AC454_contig11563_v2_297
AC454_contig11565_v2_84
AC454_contig11566_v2_237
AC454_contig11566_v2_326
AC454_contig11580_v2_93
AC454_contig11582_v2_166
AC454_contig11599_v2_163
AC454_contig11606_v2_122
AC454_contig11614_v2_72
AC454_contig11617_v2_43
AC454_contig11619_v2_236
AC454_contig11626_v2_158
AC454_contig11626_v2_278
AC454_contig11629_v2_317
AC454_contig11630_v2_25
AC454_contig11636_v2_381
AC454_contig11636_v2_291
AC454_contig11647_v2_229
AC454_contig11650_v2_33
AC454_contig11652_v2_106
AC454_contig11656_v2_194
AC454_contig11658_v2_51
AC454_contig11658_v2_607
AC454_contig11658_v2_619
AC454_contig11663_v2_40
AC454_contig11663_v2_60
AC454_contig11667_v2_150
AC454_contig11667_v2_167
AC454_contig11668_v2_172
AC454_contig11671_v2_30
AC454_contig11677_v2_1528
AC454_contig11677_v2_475
AC454_contig11680_v2_227
AC454_contig11681_v2_230
AC454_contig11686_v2_337
AC454_contig11692_v2_19
AC454_contig11694_v2_160
AC454_contig11695_v2_1048
AC454_contig1169_v2_369
AC454_contig11713_v2_61
AC454_contig11718_v2_369
AC454_contig11723_v2_599
AC454_contig11725_v2_262
AC454_contig11730_v2_13
AC454_contig11735_v2_6
AC454_contig11742_v2_754
AC454_contig11742_v2_305
AC454_contig11744_v2_88
AC454_contig11745_v2_82
AC454_contig11751_v2_111
AC454_contig11757_v2_41
AC454_contig11757_v2_78
AC454_contig11760_v2_330
AC454_contig11760_v2_141
AC454_contig11766_v2_40
AC454_contig1176_v2_177
AC454_contig1177_v2_17
AC454_contig1178_v2_239
AC454_contig11826_v2_201
AC454_contig1182_v2_146
AC454_contig11833_v2_307
AC454_contig11833_v2_328
AC454_contig11838_v2_289
AC454_contig11838_v2_340
AC454_contig11847_v2_250
AC454_contig11862_v2_2534
AC454_contig11862_v2_2678
AC454_contig11866_v2_12
AC454_contig1186_v2_147
AC454_contig1187_v2_33
AC454_contig1187_v2_95
AC454_contig11883_v2_219
AC454_contig11906_v2_185
AC454_contig11934_v2_199
AC454_contig11937_v2_81
AC454_contig11939_v2_84
AC454_contig11939_v2_175
AC454_contig11945_v2_79
AC454_contig11948_v2_196
AC454_contig1194_v2_60
AC454_contig11956_v2_190
AC454_contig11956_v2_404
AC454_contig11961_v2_204
AC454_contig11986_v2_681
AC454_contig11986_v2_647
AC454_contig11987_v2_159
AC454_contig11990_v2_317
AC454_contig11990_v2_466
AC454_contig11993_v2_226
AC454_contig12012_v2_255
AC454_contig12032_v2_473
AC454_contig12032_v2_132
AC454_contig12045_v2_274
AC454_contig12047_v2_156
AC454_contig12053_v2_919
AC454_contig12053_v2_78
AC454_contig1205_v2_147
AC454_contig12064_v2_13
AC454_contig12071_v2_64
AC454_contig12083_v2_13
AC454_contig12083_v2_1
AC454_contig1208_v2_1536
AC454_contig1208_v2_1548
AC454_contig1208_v2_584
AC454_contig12095_v2_304
AC454_contig12095_v2_349
AC454_contig12095_v2_551
AC454_contig12096_v2_222
AC454_contig120_v2_233
AC454_contig12114_v2_236
AC454_contig12115_v2_363
AC454_contig12117_v2_125
AC454_contig1211_v2_120
AC454_contig12123_v2_253
AC454_contig12125_v2_494
AC454_contig12132_v2_42
AC454_contig12134_v2_308
AC454_contig12168_v2_1
AC454_contig12172_v2_86
AC454_contig12172_v2_48
AC454_contig12181_v2_704
AC454_contig12182_v2_205
AC454_contig12189_v2_266
AC454_contig12194_v2_502
AC454_contig12194_v2_526
AC454_contig12195_v2_1
AC454_contig12198_v2_429
AC454_contig1219_v2_29
AC454_contig12217_v2_165
AC454_contig1221_v2_959
AC454_contig1221_v2_971
AC454_contig12220_v2_31
AC454_contig12224_v2_465
AC454_contig12228_v2_53
AC454_contig12228_v2_163
AC454_contig12231_v2_196
AC454_contig12232_v2_105
AC454_contig12242_v2_15
AC454_contig12272_v2_5
AC454_contig12272_v2_139
AC454_contig12272_v2_150
AC454_contig12297_v2_96
AC454_contig12302_v2_29
AC454_contig12309_v2_1011
AC454_contig12318_v2_48
AC454_contig1231_v2_147
AC454_contig12321_v2_375
AC454_contig12326_v2_79
AC454_contig12327_v2_1
AC454_contig1232_v2_145
AC454_contig12336_v2_100
AC454_contig12339_v2_22
AC454_contig12340_v2_422
AC454_contig12351_v2_403
AC454_contig12358_v2_1016
AC454_contig12358_v2_803
AC454_contig1235_v2_287
AC454_contig12361_v2_833
AC454_contig12368_v2_67
AC454_contig1236_v2_690
AC454_contig12373_v2_522
AC454_contig12373_v2_597
AC454_contig12374_v2_292
AC454_contig12380_v2_400
AC454_contig12390_v2_103
AC454_contig12390_v2_483
AC454_contig12394_v2_56
AC454_contig12394_v2_19
AC454_contig12397_v2_70
AC454_contig12398_v2_687
AC454_contig12398_v2_648
AC454_contig123_v2_51
AC454_contig12401_v2_555
AC454_contig12410_v2_9
AC454_contig12411_v2_354
AC454_contig12412_v2_53
AC454_contig12420_v2_489
AC454_contig12425_v2_274
AC454_contig1242_v2_81
AC454_contig12438_v2_1276
AC454_contig12442_v2_359
AC454_contig12447_v2_285
AC454_contig12454_v2_79
AC454_contig12454_v2_179
AC454_contig12454_v2_16
AC454_contig12455_v2_709
AC454_contig12459_v2_1404
AC454_contig1246_v2_420
AC454_contig12474_v2_69
AC454_contig12475_v2_297
AC454_contig12489_v2_275
AC454_contig12491_v2_310
AC454_contig12495_v2_163
AC454_contig12506_v2_501
AC454_contig1250_v2_194
AC454_contig12514_v2_940
AC454_contig12523_v2_192
AC454_contig12523_v2_67
AC454_contig1253_v2_129
AC454_contig12540_v2_46
AC454_contig12549_v2_301
AC454_contig12550_v2_296
AC454_contig12558_v2_71
AC454_contig12574_v2_212
AC454_contig12607_v2_212
AC454_contig12611_v2_288
AC454_contig12613_v2_31
AC454_contig12617_v2_85
AC454_contig12617_v2_384
AC454_contig12617_v2_783
AC454_contig12620_v2_110
AC454_contig12628_v2_512
AC454_contig12634_v2_400
AC454_contig12637_v2_29
AC454_contig12637_v2_87
AC454_contig1263_v2_610
AC454_contig12641_v2_287
AC454_contig12649_v2_833
AC454_contig12661_v2_935
AC454_contig12671_v2_268
AC454_contig12671_v2_182
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