AC454_contig27986_v2

NameAC454_contig27986_v2
AccessionID2121015
Sequence
GTTCATGTGAAATAAAAAAATACTTGTACTACTACAATCTATGACAGTCC
CAACCAGTCAGAATTTCCAAATTTTAATCTACCAAATCTGATTTAAAAGG
GTTATGAAATTAGGGACTCAAACCTGTTCCCCAAGAACTTATGAAGCCAA
CCTTTCCCCAAAAACCTAATAAATCTGATTTTAAAGGGTATTATGAACAT
AAATACCCCTTACTGAAAGATTTAACATGGAATCTGTAAATAAGAGTTGG
ATTTAGCATAAATAATCTGGTCCCTGCACCATGGATCTTAACAAAAATAT
TACAATTGTGCAACATACCATTGCTGGTTTTTCCTGAACTCCGTAAGCAC
CGGGTATATGTTCTCAAAGGCTGTATAGGTCTCATCTCTCACCTTAAGAT
TCGAAATGAAACAATGCTGATCAGATCCAACCAGAATAGCATATAAAACC
TGGGAGGGCAGAAACAAAAAAAGGNGTCTAGTGATATCACCTTAGCTCCT
GTAAGAACGTATTT
Length514
Typecontig
Organism American Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ACWP1_049621_2739_3344 0-287
EST ACHS2n_158892_3445_2703 255-514

InterProScan Analysis

Analysis Date: 11-03-2009 (Interpro: AC454_contigs_v2)
SEQUENCE: AC454_contig27986_v2_3_ORF2 CRC64: DAE2E4E2CC2C7934 LENGTH: 68 aa
No hits reported.
SEQUENCE: AC454_contig27986_v2_5_ORF2 CRC64: 04836507C0B9EB5A LENGTH: 65 aa
No hits reported.
SEQUENCE: AC454_contig27986_v2_6_ORF2 CRC64: 618644E1B014CD22 LENGTH: 63 aa
No hits reported.
SEQUENCE: AC454_contig27986_v2_3_ORF2 CRC64: DAE2E4E2CC2C7934 LENGTH: 68 aa
No hits reported.
SEQUENCE: AC454_contig27986_v2_5_ORF2 CRC64: 04836507C0B9EB5A LENGTH: 65 aa
No hits reported.
SEQUENCE: AC454_contig27986_v2_6_ORF2 CRC64: 618644E1B014CD22 LENGTH: 63 aa
No hits reported.

Blast Hits to Contigs V2 CC454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig1167_v24.64536e-12100.00%
CC454_contig1167_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 4.64536e-12
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  808 HCWFFLNSVSTGYMFSKAV*VSSLTL 885

HSP 2 
Score: 22.6031 bits (43), Expect = 4.64536e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  488 HLSSCKNVF 514
            HLSSCKN F
Sbjct:  788 HLSSCKNDF 814

HSP 3 
Score: 63.8419 bits (133), Expect = 9.96399e-11
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  321 ISNLKVRDETYTAFENIYPVLTEFRKNQQ 407
            ++  KVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  797 LTGAKVRDETYTAFENIYPVLTEFRKNQQ 883

Blast Hits to Contigs V2 CCall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig1245_v24.75166e-12100.00%
CCall_contig1245_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 4.75166e-12
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  808 HCWFFLNSVSTGYMFSKAV*VSSLTL 885

HSP 2 
Score: 22.6031 bits (43), Expect = 4.75166e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  488 HLSSCKNVF 514
            HLSSCKN F
Sbjct:  788 HLSSCKNDF 814

Blast Hits to Contig V2 Oall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig1191_v23.74887e-12100.00%
Oall_contig1191_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 3.74887e-12
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  825 HCWFFLNSVSTGYMFSKAV*VSSLTL 902

HSP 2 
Score: 22.6031 bits (43), Expect = 3.74887e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  488 HLSSCKNVF 514
            HLSSCKN F
Sbjct:  805 HLSSCKNDF 831

HSP 3 
Score: 63.8419 bits (133), Expect = 7.95947e-11
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  321 ISNLKVRDETYTAFENIYPVLTEFRKNQQ 407
            ++  KVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  814 LTGAKVRDETYTAFENIYPVLTEFRKNQQ 900

Blast Hits to Contig V2 RO454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig14292_v23.52101e-11100.00%
RO454_contig14292_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 3.52101e-11
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  603 HCWFFLNSVSTGYMFSKAV*VSSLTL 680

HSP 2 
Score: 63.8419 bits (133), Expect = 4.80007e-11
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  321 ISNLKVRDETYTAFENIYPVLTEFRKNQQ 407
            ++  KVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  592 LTGAKVRDETYTAFENIYPVLTEFRKNQQ 678

Blast Hits to Contigs V2 WO454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig19061_v22.64305e-11100.00%
WO454_contig19061_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 2.64305e-11
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1
Query:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  173 HCWFFLNSVSTGYMFSKAV*VSSLTL 250

HSP 2 
Score: 63.8419 bits (133), Expect = 3.6034e-11
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  321 ISNLKVRDETYTAFENIYPVLTEFRKNQQ 407
            ++  KVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  162 LTGAKVRDETYTAFENIYPVLTEFRKNQQ 248

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