Oall_contig14471_v2

NameOall_contig14471_v2
AccessionID6942994
Sequence
ACGTACTACTACCGGTAGAAATTAATACCTACGGGTTTACAACAAAAACT
AGACtgCNACTaAGTAAACTTCCTGGATATCTCANGCAACTATCTTTCTG
GCAGAATTGACAAGCAAAAGTGGGANATGGCATCACTGGAGATGCTGAAT
TTAGGGAAGAACAATTTTTTTGGAGAGCTGCCAGGATCATTCGGTAGTGA
CAAGCTTCAGAACTTGGACTTGTCTAGAAAATCAGTTCTCAGGTAATACT
CCCCAAGA
Length258
Typecontig
Organism Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST WOA_133236_0417_3821 0-258
EST ROB_000479_1631_0750 42-174

InterProScan Analysis

Analysis Date: 11-20-2009 (Interpro: Oall_contigs_v2)
SEQUENCE: Oall_contig14471_v2_1_ORF2 CRC64: 649055D113B6B721 LENGTH: 60 aa
noIPR
unintegrated
unintegrated
PTHR23258 [4-55]T 3.8e-09 PTHR23258 SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE
PTHR23258:SF473 [4-55]T 3.8e-09 PTHR23258:SF473 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE
SSF52058 [3-55]T 4.6e-06 SSF52058 L domain-like L domain-like
SEQUENCE: Oall_contig14471_v2_5_ORF2 CRC64: A31F5E8303B6F8DC LENGTH: 64 aa
noIPR
unintegrated
unintegrated
seg [52-62]? NA seg seg seg
SEQUENCE: Oall_contig14471_v2_1_ORF2 CRC64: 649055D113B6B721 LENGTH: 60 aa
noIPR
unintegrated
unintegrated
PANTHERPTHR23258SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE
 3.8e-09 [4-55]T       
PANTHERPTHR23258:SF473LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE
 3.8e-09 [4-55]T       
SUPERFAMILYSSF52058L domain-like
 4.6e-06 [3-55]T       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: Oall_contig14471_v2_5_ORF2 CRC64: A31F5E8303B6F8DC LENGTH: 64 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [52-62]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Uniprot

Analysis Date: 11-17-2009 (Blast: Oall_v2_uniprot)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
B9IKH3_POPTR3.29463e-1368.52%
Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578044 PE=4 SV=1
HSP 1 
Score: 77.7962 bits (190), Expect = 3.29463e-13
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L GRID +KW+M SL+ML+L +N+FFG LP SFGSD L+NLDLS
Sbjct:  407 VYFLDISANKLLGRIDSRKWEMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLS 460

B9IKH2_POPTR3.29463e-1368.52%
Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_911655 PE=4 SV=1
HSP 1 
Score: 77.7962 bits (190), Expect = 3.29463e-13
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L GRID +KW+M SL+ML+L +N+FFG LP SFGSD L+NLDLS
Sbjct:  432 VYFLDISANKLLGRIDSRKWEMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLS 485

B9HE28_POPTR7.33967e-1365.45%
Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819535 PE=4 SV=1
HSP 1 
Score: 76.6406 bits (187), Expect = 7.33967e-13
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLSR 228
            V FLDIS N LSGRID +KW+M SL+ML+L +N+F G LP SFGS+ L+NLDLS+
Sbjct:  431 VYFLDISSNNLSGRIDSRKWEMPSLQMLSLARNSFLGGLPDSFGSENLENLDLSQ 485

B9RRZ6_RICCO2.13552e-1261.82%
Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0800450 PE=4 SV=1
HSP 1 
Score: 75.0998 bits (183), Expect = 2.13552e-12
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLSR 228
            V FLDIS N  SGR++ +KW+M SL+MLNL +N F G LP SFGSD+++NLDLS+
Sbjct:  431 VYFLDISSNNFSGRLESRKWEMTSLQMLNLARNKFSGGLPDSFGSDQIENLDLSQ 485

A7P558_VITVI4.75743e-1262.96%
Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032409001 PE=4 SV=1
HSP 1 
Score: 73.9442 bits (180), Expect = 4.75743e-12
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L+G+I  ++WDM SL+ML+L +N FFG LP SFG+ KL+NLDLS
Sbjct:  429 VYFLDISDNNLTGKISDRRWDMPSLQMLSLARNRFFGNLPQSFGASKLENLDLS 482

A5BBM1_VITVI4.75743e-1262.96%
Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009745 PE=4 SV=1
HSP 1 
Score: 73.9442 bits (180), Expect = 4.75743e-12
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L+G+I  ++WDM SL+ML+L +N FFG LP SFG+ KL+NLDLS
Sbjct:  334 VYFLDISDNNLTGKISDRRWDMPSLQMLSLARNRFFGNLPQSFGASKLENLDLS 387

Blast Hits to Populus Trichocarpa Proteins

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
eugene3.001802681.58015e-1568.52%
jgi|Poptr1_1|578044|eugene3.00180268
HSP 1 
Score: 77.7962 bits (190), Expect = 1.58015e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L GRID +KW+M SL+ML+L +N+FFG LP SFGSD L+NLDLS
Sbjct:  407 VYFLDISANKLLGRIDSRKWEMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLS 460

gw1.XVIII.1137.11.58015e-1568.52%
jgi|Poptr1_1|260596|gw1.XVIII.1137.1
HSP 1 
Score: 77.7962 bits (190), Expect = 1.58015e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLS 225
            V FLDIS N L GRID +KW+M SL+ML+L +N+FFG LP SFGSD L+NLDLS
Sbjct:  422 VYFLDISANKLLGRIDSRKWEMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLS 475

estExt_fgenesh4_pg.C_LG_VI16283.5202e-1565.45%
jgi|Poptr1_1|819535|estExt_fgenesh4_pg.C_LG_VI1628
HSP 1 
Score: 76.6406 bits (187), Expect = 3.5202e-15
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   64 VNFLDISXNYLSGRIDKQKWDMASLEMLNLGKNNFFGELPGSFGSDKLQNLDLSR 228
            V FLDIS N LSGRID +KW+M SL+ML+L +N+F G LP SFGS+ L+NLDLS+
Sbjct:  431 VYFLDISSNNLSGRIDSRKWEMPSLQMLSLARNSFLGGLPDSFGSENLENLDLSQ 485

tags