CCall_contig26073_v2

NameCCall_contig26073_v2
AccessionID4036059
Sequence
GGAAAATAAAGTAAAATAACAAATATGTAAAAGTTTAACAATCTAGTTAA
GAAGGCTTCAGaAATTGTGAAKACTTATTTGTGTAAGACAAAGGCTTTGC
TTCTTCTATCCTAATTGTTAAAATGTTGACAATGTTAAGATTTGGTC
Length147
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST CCCanker_096570_2337_0251 0-128
EST CCCanker_088135_1303_1014 33-147

Blast Hits to Contigs V2 CC454

Analysis Date: 11-17-2009 (Blast:CCall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig1853_v26.19884e-1978.79%
CC454_contig1853_v2
HSP 1 
Score: 69.7986 bits (146), Expect = 6.19884e-19
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 2
Query:   47 LRRLQKL*XLICVRQRLCFFYPNC*NVDNVKIW 145
            +++  +L* LICVRQRLCFFYPNC*NVDNVKIW
Sbjct:    3 VKKASEL*RLICVRQRLCFFYPNC*NVDNVKIW 101

HSP 2 
Score: 36.3494 bits (73), Expect = 6.19884e-19
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    4 K*SKITNM*KFNNLVKKASEI 66
            K*  + NM*KFNNLVKKASE+
Sbjct:   81 K*EIVINM*KFNNLVKKASEL 143

HSP 3 
Score: 67.0494 bits (140), Expect = 4.02815e-18
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -2
Query:   63 TKS*HCQHFNN*DRRSKAFVLHK*VFTI 146
            TKS*HCQHFNN*DRRSKAFVLHK*VFTI
Sbjct:    2 TKS*HCQHFNN*DRRSKAFVLHK*VFTI 85

HSP 4 
Score: 36.3494 bits (73), Expect = 4.02815e-18
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = -2
Query:    6 SEAFLTRLLNFYIFVILLY 62
            SEAFLTRLLNFYI + + Y
Sbjct:   85 SEAFLTRLLNFYILITISY 141

HSP 5 
Score: 64.3001 bits (134), Expect = 1.2412e-16
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -3
Query:   62 PNLNIVNILTIRIEEAKPLSYTNKXSQF 145
            PNLNIVNILTIRIEEAKPLSYTNK SQF
Sbjct:    3 PNLNIVNILTIRIEEAKPLSYTNKSSQF 86

HSP 6 
Score: 34.0583 bits (68), Expect = 1.2412e-16
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = -1
Query:    7 F*SLLN*IVKLLHICYFTL 63
            F*SLLN*IVKLLHI Y+ L
Sbjct:   84 F*SLLN*IVKLLHIDYYFL 140

HSP 7 
Score: 62.9255 bits (131), Expect = 3.8069e-15
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3
Query:   60 RNCEXLFV*DKGFASSILIVKMLTMLRFG 146
            +NCE LFV*DKGFASSILIVKMLTMLRFG
Sbjct:    2 QNCEDLFV*DKGFASSILIVKMLTMLRFG 88

HSP 8 
Score: 30.3927 bits (60), Expect = 3.8069e-15
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 2
Query:   17 *QICKSLTI*LRRLQ 61
            * ICKSLTI*LRRLQ
Sbjct:   86 *SICKSLTI*LRRLQ 130

HSP 9 
Score: 61.0927 bits (127), Expect = 6.51612e-11
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -1
Query:   64 DQILTLSTF*QLG*KKQSLCLTQISXHN 147
            DQILTLSTF*QLG*KKQSLCLTQIS HN
Sbjct:    1 DQILTLSTF*QLG*KKQSLCLTQISLHN 84

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: CCall_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig17079_v22.73891e-1771.88%
Oall_contig17079_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 2.73891e-17
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2
Query:   50 RRLQKL*XLICVRQRLCFFYPNC*NVDNVKIW 145
            ++  ++* LICVRQRLCFFYPNC*NVDN  IW
Sbjct:   69 KKASEM*RLICVRQRLCFFYPNC*NVDNXXIW 164

HSP 2 
Score: 32.6837 bits (65), Expect = 2.73891e-17
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    4 K*SKITNM*KFNNLVKKASEI 66
            K*  + NM*KFNNL KKASE+
Sbjct:   24 K*EIVINM*KFNNLDKKASEM 86

HSP 3 
Score: 56.5106 bits (117), Expect = 2.42647e-16
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -2
Query:   66 TKS*HCQHFNN*DRRSKAFVLHK*VFT 146
            TK   CQHFNN*DRRSKAFVLHK*VFT
Sbjct:   85 TKXXXCQHFNN*DRRSKAFVLHK*VFT 165

HSP 4 
Score: 36.3494 bits (73), Expect = 2.42647e-16
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = -2
Query:    6 ISEAFLTRLLNFYIFVILLY 65
            ISEAFL+RLLNFYI + + Y
Sbjct:   26 ISEAFLSRLLNFYILITISY 85

HSP 5 
Score: 56.5106 bits (117), Expect = 1.38763e-14
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = -3
Query:   62 PNLNIVNILTIRIEEAKPLSYTNKXSQF 145
            PN  IVNILTIRIEEAKPLSYTNK S F
Sbjct:   81 PNXXIVNILTIRIEEAKPLSYTNKSSHF 164

HSP 6 
Score: 30.3927 bits (60), Expect = 1.38763e-14
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:    7 NF*SLLN*IVKLLHICYFTL 66
            +F*SLL *IVKLLHI Y+ L
Sbjct:   27 HF*SLLI*IVKLLHIDYYFL 86

HSP 7 
Score: 52.3867 bits (108), Expect = 8.95945e-14
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 3
Query:   60 RNCEXLFV*DKGFASSILIVKMLTMLRFG 146
            + CE LFV*DKGFASSILIVKMLT   FG
Sbjct:   79 QKCEDLFV*DKGFASSILIVKMLTXXXFG 165

HSP 8 
Score: 31.7673 bits (63), Expect = 8.95945e-14
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   17 *QICKSLTI*LRRLQK 64
            * ICKSLTI*+RRLQK
Sbjct:   37 *SICKSLTI*IRRLQK 84

HSP 9 
Score: 55.5941 bits (115), Expect = 9.41673e-12
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = -1
Query:   67 DQILTLSTF*QLG*KKQSLCLTQISXH 147
            DQIL LSTF*QLG*KKQSLCLTQIS H
Sbjct:   86 DQILXLSTF*QLG*KKQSLCLTQISLH 166

HSP 10 
Score: 21.6867 bits (41), Expect = 9.41673e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3
Query:   38 FLKPS*LDC 64
            FLKPS LDC
Sbjct:   58 FLKPSYLDC 84

Blast Hits to Contig V2 RO454

Analysis Date: 11-17-2009 (Blast: CCall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig11576_v21.96634e-1771.88%
RO454_contig11576_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 1.96634e-17
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2
Query:   50 RRLQKL*XLICVRQRLCFFYPNC*NVDNVKIW 145
            ++  ++* LICVRQRLCFFYPNC*NVDN  IW
Sbjct:   69 KKASEM*RLICVRQRLCFFYPNC*NVDNXXIW 164

HSP 2 
Score: 32.6837 bits (65), Expect = 1.96634e-17
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    4 K*SKITNM*KFNNLVKKASEI 66
            K*  + NM*KFNNL KKASE+
Sbjct:   24 K*EIVINM*KFNNLDKKASEM 86

HSP 3 
Score: 56.5106 bits (117), Expect = 1.74176e-16
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -2
Query:   66 TKS*HCQHFNN*DRRSKAFVLHK*VFT 146
            TK   CQHFNN*DRRSKAFVLHK*VFT
Sbjct:   85 TKXXXCQHFNN*DRRSKAFVLHK*VFT 165

HSP 4 
Score: 36.3494 bits (73), Expect = 1.74176e-16
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = -2
Query:    6 ISEAFLTRLLNFYIFVILLY 65
            ISEAFL+RLLNFYI + + Y
Sbjct:   26 ISEAFLSRLLNFYILITISY 85

HSP 5 
Score: 56.5106 bits (117), Expect = 9.95737e-15
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = -3
Query:   62 PNLNIVNILTIRIEEAKPLSYTNKXSQF 145
            PN  IVNILTIRIEEAKPLSYTNK S F
Sbjct:   81 PNXXIVNILTIRIEEAKPLSYTNKSSHF 164

HSP 6 
Score: 30.3927 bits (60), Expect = 9.95737e-15
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:    7 NF*SLLN*IVKLLHICYFTL 66
            +F*SLL *IVKLLHI Y+ L
Sbjct:   27 HF*SLLI*IVKLLHIDYYFL 86

HSP 7 
Score: 52.3867 bits (108), Expect = 6.42803e-14
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 3
Query:   60 RNCEXLFV*DKGFASSILIVKMLTMLRFG 146
            + CE LFV*DKGFASSILIVKMLT   FG
Sbjct:   79 QKCEDLFV*DKGFASSILIVKMLTXXXFG 165

HSP 8 
Score: 31.7673 bits (63), Expect = 6.42803e-14
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   17 *QICKSLTI*LRRLQK 64
            * ICKSLTI*+RRLQK
Sbjct:   37 *SICKSLTI*IRRLQK 84

HSP 9 
Score: 55.5941 bits (115), Expect = 6.75277e-12
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = -1
Query:   67 DQILTLSTF*QLG*KKQSLCLTQISXH 147
            DQIL LSTF*QLG*KKQSLCLTQIS H
Sbjct:   86 DQILXLSTF*QLG*KKQSLCLTQISLH 166

HSP 10 
Score: 21.6867 bits (41), Expect = 6.75277e-12
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3
Query:   38 FLKPS*LDC 64
            FLKPS LDC
Sbjct:   58 FLKPSYLDC 84

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