ROMass_contig4278_v1

NameROMass_contig4278_v1
AccessionID6190440
Sequence
aaatacaataaagccaacacatcattctcgatatgtatatgccatccata
caggtcaatcccgtcaaagttaaaacttcttttcaataaatgatgccctt
tattctggttatatttgtaactatcataacttgaatacctagtcaaattt
tcaccaaaatacattacttctcactttctccatctctcctagat
Length194
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source flxAssembly

InterProScan Analysis

Analysis Date: 11-18-2009 (Interpro: ROMass_contigs_v1)
SEQUENCE: ROMass_contig4278_v1_6_ORF2 CRC64: 006EF842DC2BD770 LENGTH: 56 aa
No hits reported.
SEQUENCE: ROMass_contig4278_v1_6_ORF2 CRC64: 006EF842DC2BD770 LENGTH: 56 aa
No hits reported.

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_Oall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig12799_v28.14733e-3998.39%
Oall_contig12799_v2
HSP 1 
Score: 154.567 bits (331), Expect = 8.14733e-39
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -1
Query:    9 I*ERWRK*EVMYFGENLTRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL 194
            I*ERWRK*EVMYFGENL RYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL
Sbjct:   71 I*ERWRK*EVMYFGENLXRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL 256

HSP 2 
Score: 150.902 bits (323), Expect = 1.03393e-37
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 2
Query:    8 IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNT*SNFHQNTLLLTFSISPR 193
            IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNT SNFHQNTLLLTFSISPR
Sbjct:   70 IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNTXSNFHQNTLLLTFSISPR 255

HSP 3 
Score: 141.279 bits (302), Expect = 8.14922e-35
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -2
Query:    8 SRRDGESEK*CILVKI*LGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY 193
            SRRDGESEK*CILVKI* GIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY
Sbjct:   70 SRRDGESEK*CILVKI*XGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY 255

HSP 4 
Score: 132.115 bits (282), Expect = 4.67527e-32
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -3
Query:    4 LGEMEKVRSNVFW*KFD*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFIV 192
            LGEMEKVRSNVFW*KF *VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGF++
Sbjct:   66 LGEMEKVRSNVFW*KFX*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFMI 254

HSP 5 
Score: 77.5882 bits (163), Expect = 1.14871e-23
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1
Query:    7 NKANTSFSICICHPYRSIPSKLKLLFNK*CP 99
            +KANTSFSICICHPYRSIPSKLKLLFNK*CP
Sbjct:   69 HKANTSFSICICHPYRSIPSKLKLLFNK*CP 161

HSP 6 
Score: 42.7643 bits (87), Expect = 1.14871e-23
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3
Query:  144 QIFTKIHYFSLSPSLLD 194
            QIFTKIHYFSLSPSLLD
Sbjct:  206 QIFTKIHYFSLSPSLLD 256

HSP 7 
Score: 66.5912 bits (139), Expect = 9.95294e-20
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3
Query:    9 *SQHIILDMYMPSIQVNPVKVKTSFQ*MM 95
            *SQHIILDMYMPSIQVNPVKVKTSFQ*MM
Sbjct:   71 *SQHIILDMYMPSIQVNPVKVKTSFQ*MM 157

HSP 8 
Score: 40.4733 bits (82), Expect = 9.95294e-20
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  145 KFSPKYITSHFLHLS* 192
            KFSPKYITSHFLHLS*
Sbjct:  207 KFSPKYITSHFLHLS* 254

Blast Hits to Contig V2 RO454

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_RO454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig8516_v25.08795e-3998.39%
RO454_contig8516_v2
HSP 1 
Score: 154.567 bits (331), Expect = 5.08795e-39
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -1
Query:    9 I*ERWRK*EVMYFGENLTRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL 194
            I*ERWRK*EVMYFGENL RYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL
Sbjct:   71 I*ERWRK*EVMYFGENLXRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDVLAL 256

HSP 2 
Score: 150.902 bits (323), Expect = 6.45683e-38
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 2
Query:    8 IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNT*SNFHQNTLLLTFSISPR 193
            IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNT SNFHQNTLLLTFSISPR
Sbjct:   70 IKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNTXSNFHQNTLLLTFSISPR 255

HSP 3 
Score: 141.279 bits (302), Expect = 5.08914e-35
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -2
Query:    8 SRRDGESEK*CILVKI*LGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY 193
            SRRDGESEK*CILVKI* GIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY
Sbjct:   70 SRRDGESEK*CILVKI*XGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLY 255

HSP 4 
Score: 132.115 bits (282), Expect = 2.91967e-32
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -3
Query:    4 LGEMEKVRSNVFW*KFD*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFIV 192
            LGEMEKVRSNVFW*KF *VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGF++
Sbjct:   66 LGEMEKVRSNVFW*KFX*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFMI 254

HSP 5 
Score: 77.5882 bits (163), Expect = 7.44138e-24
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1
Query:    7 NKANTSFSICICHPYRSIPSKLKLLFNK*CP 99
            +KANTSFSICICHPYRSIPSKLKLLFNK*CP
Sbjct:   69 HKANTSFSICICHPYRSIPSKLKLLFNK*CP 161

HSP 6 
Score: 42.7643 bits (87), Expect = 7.44138e-24
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3
Query:  144 QIFTKIHYFSLSPSLLD 194
            QIFTKIHYFSLSPSLLD
Sbjct:  206 QIFTKIHYFSLSPSLLD 256

HSP 7 
Score: 66.5912 bits (139), Expect = 6.44644e-20
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3
Query:    9 *SQHIILDMYMPSIQVNPVKVKTSFQ*MM 95
            *SQHIILDMYMPSIQVNPVKVKTSFQ*MM
Sbjct:   71 *SQHIILDMYMPSIQVNPVKVKTSFQ*MM 157

HSP 8 
Score: 40.4733 bits (82), Expect = 6.44644e-20
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  145 KFSPKYITSHFLHLS* 192
            KFSPKYITSHFLHLS*
Sbjct:  207 KFSPKYITSHFLHLS* 254

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