ROMass_contig3217_v1

NameROMass_contig3217_v1
AccessionID6175721
Sequence
AcTtCTtGCCCAGAAaCtGCCCCATACGAGcTTCCCATCGaCCACATTTG
TGcAGtGTCACTCCCCTATACtttGAGCTTCCCCTTGAAAAaCCcGGTGC
TCTGGCGcc
Length109
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source flxAssembly

Blast Hits to Contigs V2 CC454

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_CC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig16685_v23.23225e-1791.18%
CC454_contig16685_v2
HSP 1 
Score: 81.712 bits (172), Expect = 3.23225e-17
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  333 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 434

HSP 2 
Score: 76.6717 bits (161), Expect = 1.07087e-15
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F PRNCPIRASHRPHLCSVTP YFELPLE P
Sbjct:  334 FFPRNCPIRASHRPHLCSVTPRYFELPLENP 426

CC454_contig43580_v21.58189e-1688.24%
CC454_contig43580_v2
HSP 1 
Score: 79.421 bits (167), Expect = 1.58189e-16
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  164 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 265

HSP 2 
Score: 63.8419 bits (133), Expect = 7.79654e-12
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            FLP+N PIRASH PHLC VTPLY ELPL  P
Sbjct:  172 FLPKNWPIRASHLPHLCKVTPLYLELPLGNP 264

CC454_contig37568_v21.46123e-1585.29%
CC454_contig37568_v2
HSP 1 
Score: 76.2135 bits (160), Expect = 1.46123e-15
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFL +K
Sbjct:  112 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLREK 213

HSP 2 
Score: 71.6314 bits (150), Expect = 3.52383e-14
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F  RNCPIRASHRPHLCSVTP YFELPLE P
Sbjct:  113 FSRRNCPIRASHRPHLCSVTPRYFELPLENP 205

CC454_contig26225_v26.65096e-14100.00%
CC454_contig26225_v2
HSP 1 
Score: 70.715 bits (148), Expect = 6.65096e-14
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFEL 80
            FLPRNCPIRASHRPHLCSVTPLYFEL
Sbjct:    1 FLPRNCPIRASHRPHLCSVTPLYFEL 78

HSP 2 
Score: 68.8822 bits (144), Expect = 2.35327e-13
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1
Query:    2 SSKYRGVTLHKCGRWEARMGQFLGKK 79
            SSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:    2 SSKYRGVTLHKCGRWEARMGQFLGKK 79

HSP 3 
Score: 60.1762 bits (125), Expect = 9.89414e-11
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 TSCPETAPYELPIDHICAVSLPYTLS 78
            TSCPETAPYELPID IC VSLPYT S
Sbjct:    3 TSCPETAPYELPIDRICVVSLPYTSS 80

Blast Hits to Contigs V2 CCall

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_CCall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig16567_v23.3421e-1791.18%
CCall_contig16567_v2
HSP 1 
Score: 81.712 bits (172), Expect = 3.3421e-17
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  333 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 434

HSP 2 
Score: 76.6717 bits (161), Expect = 1.10699e-15
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F PRNCPIRASHRPHLCSVTP YFELPLE P
Sbjct:  334 FFPRNCPIRASHRPHLCSVTPRYFELPLENP 426

CCall_contig42987_v21.63566e-1688.24%
CCall_contig42987_v2
HSP 1 
Score: 79.421 bits (167), Expect = 1.63566e-16
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  164 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 265

HSP 2 
Score: 63.8419 bits (133), Expect = 8.05954e-12
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            FLP+N PIRASH PHLC VTPLY ELPL  P
Sbjct:  172 FLPKNWPIRASHLPHLCKVTPLYLELPLGNP 264

CCall_contig37164_v21.51089e-1585.29%
CCall_contig37164_v2
HSP 1 
Score: 76.2135 bits (160), Expect = 1.51089e-15
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFL +K
Sbjct:  112 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLREK 213

HSP 2 
Score: 71.6314 bits (150), Expect = 3.6427e-14
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F  RNCPIRASHRPHLCSVTP YFELPLE P
Sbjct:  113 FSRRNCPIRASHRPHLCSVTPRYFELPLENP 205

CCall_contig25855_v26.87532e-14100.00%
CCall_contig25855_v2
HSP 1 
Score: 70.715 bits (148), Expect = 6.87532e-14
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFEL 80
            FLPRNCPIRASHRPHLCSVTPLYFEL
Sbjct:    1 FLPRNCPIRASHRPHLCSVTPLYFEL 78

HSP 2 
Score: 68.8822 bits (144), Expect = 2.43324e-13
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1
Query:    2 SSKYRGVTLHKCGRWEARMGQFLGKK 79
            SSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:    2 SSKYRGVTLHKCGRWEARMGQFLGKK 79

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_Oall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig11233_v22.22514e-1996.77%
Oall_contig11233_v2
HSP 1 
Score: 81.2538 bits (171), Expect = 2.22514e-19
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            FLPRNCPIRASHRPHLCSVTPLYFELPLE P
Sbjct:   14 FLPRNCPIRASHRPHLCSVTPLYFELPLENP 106

HSP 2 
Score: 21.6867 bits (41), Expect = 2.22514e-19
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 2
Query:   83 P*KTRCSGA 109
            P KTRCSGA
Sbjct:    1 PLKTRCSGA 27

HSP 3 
Score: 77.5882 bits (163), Expect = 4.1545e-19
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -2
Query:    1 FQGEAQSIGE*HCTNVVDGKLVWGSFWARS 90
            FQGEAQSIGE*HCTNVVDGKLVWGSFWARS
Sbjct:   19 FQGEAQSIGE*HCTNVVDGKLVWGSFWARS 108

HSP 4 
Score: 24.436 bits (47), Expect = 4.1545e-19
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -2
Query:   79 APEHRVFQGE 108
            APEHRVF+G+
Sbjct:    2 APEHRVFKGK 31

HSP 5 
Score: 81.712 bits (172), Expect = 2.61052e-17
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:    6 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 107

HSP 6 
Score: 78.5046 bits (165), Expect = 2.4114e-16
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 TSCPETAPYELPIDHICAVSLPYTLSFPLK 90
            TSCPETAPYELPIDHICAVSLPYTLSFPLK
Sbjct:   19 TSCPETAPYELPIDHICAVSLPYTLSFPLK 108

HSP 7 
Score: 71.6314 bits (150), Expect = 2.82674e-14
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2
Query:    2 LLAQKLPHTSFPSTTFVQCHSPIL*ASP*K 91
            LLAQKLPHTSFPSTTFVQCHSPIL*ASP*K
Sbjct:   18 LLAQKLPHTSFPSTTFVQCHSPIL*ASP*K 107

HSP 8 
Score: 69.7986 bits (146), Expect = 1.00699e-13
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3
Query:    3 FKGKLKV*GSDTAQMWSMGSSYGAVSGQE 89
            FKGKLKV*GSDTAQMWSMGSSYGAVSGQE
Sbjct:   20 FKGKLKV*GSDTAQMWSMGSSYGAVSGQE 106

Oall_contig31042_v27.32806e-18100.00%
Oall_contig31042_v2
HSP 1 
Score: 83.5449 bits (176), Expect = 7.32806e-18
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            FLPRNCPIRASHRPHLCSVTPLYFELPLEKP
Sbjct:  208 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 300

HSP 2 
Score: 81.712 bits (172), Expect = 2.62882e-17
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GFSRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  200 QSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 301

HSP 3 
Score: 70.715 bits (148), Expect = 2.15309e-16
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3
Query:    3 FFKGKLKV*GSDTAQMWSMGSSYGAVSGQE 92
            FFKGKL+V*GSDTAQMWSMGSSYGAVSGQE
Sbjct:  211 FFKGKLEV*GSDTAQMWSMGSSYGAVSGQE 300

HSP 4 
Score: 22.6031 bits (43), Expect = 2.15309e-16
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = -2
Query:   73 APEHRVFQGEAQ 108
            APEHR F+G+ +
Sbjct:  196 APEHRFFKGKLE 231

HSP 5 
Score: 76.2135 bits (160), Expect = 1.18016e-15
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 SCPETAPYELPIDHICAVSLPYTLSFPLKN 93
            SCPETAPYELPIDHICAVSLPYT SFPLKN
Sbjct:  210 SCPETAPYELPIDHICAVSLPYTSSFPLKN 299

HSP 6 
Score: 75.7553 bits (159), Expect = 1.63271e-15
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -2
Query:    4 VFQGEAQSIGE*HCTNVVDGKLVWGSFWAR 93
            VFQGEA+SIGE*HCTNVVDGKLVWGSFWAR
Sbjct:  210 VFQGEARSIGE*HCTNVVDGKLVWGSFWAR 299

HSP 7 
Score: 71.6314 bits (150), Expect = 2.82674e-14
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2
Query:    2 LLAQKLPHTSFPSTTFVQCHSPIL*ASP*KT 94
            LLAQKLPHTSFPSTTFVQCHSPIL ASP*KT
Sbjct:  209 LLAQKLPHTSFPSTTFVQCHSPILRASP*KT 301

Oall_contig11840_v26.7691e-1788.24%
Oall_contig11840_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 6.7691e-17
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GF+RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:   22 QSTGFARGSSKYRGVTLHKCGRWEARMGQFLGKK 123

HSP 2 
Score: 71.6314 bits (150), Expect = 2.84656e-14
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F PRNCPIRASHRPHLC VTPLYFELP   P
Sbjct:   23 FFPRNCPIRASHRPHLCRVTPLYFELPRANP 115

Oall_contig11155_v21.75523e-1696.77%
Oall_contig11155_v2
HSP 1 
Score: 78.9628 bits (166), Expect = 1.75523e-16
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = -1
Query:    2 GFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 94
            GF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  553 GFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 645

HSP 2 
Score: 63.8419 bits (133), Expect = 6.29807e-12
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            FLP+N PIRASH PHLC VTPLY ELPL  P
Sbjct:  554 FLPKNWPIRASHLPHLCKVTPLYLELPLGNP 646

Blast Hits to Contig V2 RO454

Analysis Date: 11-17-2009 (Blast: ROMass_contigs_v1.fasta_vs_RO454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig7857_v24.57805e-1788.24%
RO454_contig7857_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 4.57805e-17
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = -1
Query:    2 RAPGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 103
            ++ GF+RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:   22 QSTGFARGSSKYRGVTLHKCGRWEARMGQFLGKK 123

HSP 2 
Score: 71.6314 bits (150), Expect = 1.92711e-14
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 FLPRNCPIRASHRPHLCSVTPLYFELPLEKP 95
            F PRNCPIRASHRPHLC VTPLYFELP   P
Sbjct:   23 FFPRNCPIRASHRPHLCRVTPLYFELPRANP 115

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