Oall_contig40272_v2
| Name | Oall_contig40272_v2 |
|---|---|
| Accession | ID7193050 |
| Sequence | ACCATCAGCGATGTCATTTGGTGGCCAATTCCAGGTTGTGCAAAGACAGG |
| Length | 474 |
| Type | contig |
| Organism | Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | WOA_084440_0462_0668 | 0-249 |
| EST | WOA_130373_0656_2134 | 222-474 |
InterProScan Analysis
Analysis Date: 11-20-2009
(Interpro: Oall_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig1047_v2 | 2.2701e-50 | 94.12% | ||
AC454_contig1047_v2 | ||||
HSP 1 Score: 194.431 bits (418), Expect = 2.2701e-50 Query: 38 VQRQDKVNIMRYHVQNNYNNTVYFLKNLSNQSLASFTISDVIWWPIPGCAINLNLSKELASP*TLLALDSGIFRPASGHRGSSAP 292 HSP 2 Score: 188.933 bits (406), Expect = 1.03511e-48 Query: 37 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK*TVXXXLFCTWYLIIFTLSCLCT 291 HSP 3 Score: 187.1 bits (402), Expect = 3.65592e-48 Query: 22 WPIPGCAKTGQSKYNEIPRTE*L**YSLFLEEPVKPIASFFYHQ*CHLVANSRLCNQLKLIQRIGLSINLACS*FRNFQTSKRTPWIFST 291 HSP 4 Score: 177.936 bits (382), Expect = 2.11551e-45 Query: 41 C*RSTVSACWSENS*IKSKQGLWRGQFFG*V*VDCTTWNWPPNDITDGKRS*RLV*QVLQEINCXXXXILYVVSHYIYFVLSL 289 HSP 5 Score: 176.561 bits (379), Expect = 5.48552e-45 Query: 45 VLKIHGVRLLV*KFLNQEQARFMERPILWISLS*LHNLELATK*HH*W*KKLAIGLTGSSRNKLYYYNYSVRGISLYLLCPV 290 HSP 6 Score: 164.19 bits (352), Expect = 2.88219e-41 Query: 36 LCKDRTK*I**DTTYRXXXXXQFIS*RTCQTNR*LLLPSVMSFGGQFQVVQST*TYPKNWPLHKPCLLLIQEFSDQQADTVDLQH 290 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig47754_v2 | 2.91616e-49 | 92.94% | ||
CC454_contig47754_v2 | ||||
HSP 1 Score: 191.682 bits (412), Expect = 2.91616e-49 Query: 38 VQRQDKVNIMRYHVQNNYNNTVYFLKNLSNQSLASFTISDVIWWPIPGCAINLNLSKELASP*TLLALDSGIFRPASGHRGSSAP 292 HSP 2 Score: 189.391 bits (407), Expect = 1.4272e-48 Query: 37 CAKTGQSKYNEIPRTE*L**YSLFLEEPVKPIASFFYHQ*CHLVANSRLCNQLKLIQRIGLSINLACS*FRNFQTSKRTPWIFST 291 HSP 3 Score: 186.642 bits (401), Expect = 9.67947e-48 Query: 37 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK*TVXXXLFCTWYLIIFTLSCLCT 291 HSP 4 Score: 179.31 bits (385), Expect = 1.55885e-45 Query: 42 VLKIHGVRLLV*KFLNQEQARFMERPILWISLS*LHNLELATK*HH*W*KKLAIGLTGSSRNKLYYYNYSVRGISLYLLCPVF 290 HSP 5 Score: 173.812 bits (373), Expect = 7.04723e-44 Query: 41 C*RSTVSACWSENS*IKSKQGLWRGQFFG*V*VDCTTWNWPPNDITDGKRS*RLV*QVLQEINCXXXXILYVVSHYIYFVLSL 289 HSP 6 Score: 164.648 bits (353), Expect = 4.00819e-41 Query: 36 LCKDRTK*I**DTTYRXXXXXQFIS*RTCQTNR*LLLPSVMSFGGQFQVVQST*TYPKNWPLHKPCLLLIQEFSDQQADTVDLQH 290 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig47187_v2 | 3.0277e-49 | 92.94% | ||
CCall_contig47187_v2 | ||||
HSP 1 Score: 191.682 bits (412), Expect = 3.0277e-49 Query: 38 VQRQDKVNIMRYHVQNNYNNTVYFLKNLSNQSLASFTISDVIWWPIPGCAINLNLSKELASP*TLLALDSGIFRPASGHRGSSAP 292 HSP 2 Score: 189.391 bits (407), Expect = 1.48179e-48 Query: 37 CAKTGQSKYNEIPRTE*L**YSLFLEEPVKPIASFFYHQ*CHLVANSRLCNQLKLIQRIGLSINLACS*FRNFQTSKRTPWIFST 291 HSP 3 Score: 186.642 bits (401), Expect = 1.00497e-47 Query: 37 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK*TVXXXLFCTWYLIIFTLSCLCT 291 HSP 4 Score: 179.31 bits (385), Expect = 1.61847e-45 Query: 42 VLKIHGVRLLV*KFLNQEQARFMERPILWISLS*LHNLELATK*HH*W*KKLAIGLTGSSRNKLYYYNYSVRGISLYLLCPVF 290 HSP 5 Score: 173.812 bits (373), Expect = 7.31678e-44 Query: 41 C*RSTVSACWSENS*IKSKQGLWRGQFFG*V*VDCTTWNWPPNDITDGKRS*RLV*QVLQEINCXXXXILYVVSHYIYFVLSL 289 HSP 6 Score: 164.648 bits (353), Expect = 4.1615e-41 Query: 36 LCKDRTK*I**DTTYRXXXXXQFIS*RTCQTNR*LLLPSVMSFGGQFQVVQST*TYPKNWPLHKPCLLLIQEFSDQQADTVDLQH 290 | ||||
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Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_VI2858 | 1.76522e-23 | 74.19% | ||
jgi|Poptr1_1|717947|estExt_Genewise1_v1.C_LG_VI2858 | ||||
HSP 1 Score: 105.145 bits (261), Expect = 1.76522e-23 Query: 106 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK 291 | ||||
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Blast Hits to Contig V2 RO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
RO454_contig9001_v2 | 2.72349e-41 | 100.00% | ||
RO454_contig9001_v2 | ||||
HSP 1 Score: 164.19 bits (352), Expect = 2.72349e-41 Query: 89 YNNTVYFLKNLSNQSLASFTISDVIWWPIPGCAINLNLSKELASP*TLLALDSGIFRPASGHRGSSAP 292 HSP 2 Score: 156.858 bits (336), Expect = 4.3861e-39 Query: 97 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK*TV 291 HSP 3 Score: 152.276 bits (326), Expect = 1.05057e-37 Query: 98 RC*RSTVSACWSENS*IKSKQGLWRGQFFG*V*VDCTTWNWPPNDITDGKRS*RLV*QVLQEINC 292 HSP 4 Score: 149.985 bits (321), Expect = 5.14158e-37 Query: 91 **YSLFLEEPVKPIASFFYHQ*CHLVANSRLCNQLKLIQRIGLSINLACS*FRNFQTSKRTPWIFST 291 HSP 5 Score: 147.236 bits (315), Expect = 3.45703e-36 Query: 99 QFIS*RTCQTNR*LLLPSVMSFGGQFQVVQST*TYPKNWPLHKPCLLLIQEFSDQQADTVDLQH 290 HSP 6 Score: 144.945 bits (310), Expect = 1.69191e-35 Query: 90 VLKIHGVRLLV*KFLNQEQARFMERPILWISLS*LHNLELATK*HH*W*KKLAIGLTGSSRNKLYYY 290 | ||||
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Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_TAIR7_pep_20070425)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AT5G25770.3 | 2.20147e-15 | 54.84% | ||
similar to Os06g0163200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056894.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67646.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) | chr5:8969311-8971809 REVERSE | ||||
HSP 1 Score: 78.1814 bits (191), Expect = 2.20147e-15 Query: 106 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK 291 | ||||
AT5G25770.2 | 2.20147e-15 | 54.84% | ||
similar to Os06g0163200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056894.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67646.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) | chr5:8969311-8971809 REVERSE | ||||
HSP 1 Score: 78.1814 bits (191), Expect = 2.20147e-15 Query: 106 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK 291 | ||||
AT5G25770.1 | 2.20147e-15 | 54.84% | ||
similar to Os06g0163200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056894.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67646.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) | chr5:8969311-8971392 REVERSE | ||||
HSP 1 Score: 78.1814 bits (191), Expect = 2.20147e-15 Query: 106 GAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK 291 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
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Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig18594_v2 | 1.86603e-104 | 100.00% | ||
WO454_contig18594_v2 | ||||
HSP 1 Score: 373.591 bits (809), Expect = 1.86603e-104 Query: 2 PSAMSFGGQFQVVQRQDKVNIMRYHVQNNYNNTVYFLKNLSNQSLASFTISDVIWWPIPGCAINLNLSKELASP*TLLALDSGIFRPASGHRGSSAPKFSKSKKCFNT**RYTHTKC*PQG*FN*RKNSLEDH*PCSQLNFGSKVKSQLKIYKHVNE 472 HSP 2 Score: 347.015 bits (751), Expect = 6.81739e-104 Query: 1 PKFSWLQG*WSSRLFFLQLNYP*G*HFVWVYLHYVLKHFLDFENLGAEDPRCPLAGLKIPESRASKVYGEANSLDKFKLIAQPGIGHQMTSLMVKEASDWFDRFFKK*TVXXXLFCTWYLIIFTLSCLCTTWNWPPNDIADG 426 HSP 3 Score: 45.9718 bits (94), Expect = 6.81739e-104 Query: 419 FIDMFVDFQLTFDFTTKI 472 HSP 4 Score: 369.925 bits (801), Expect = 2.36807e-103 Query: 1 TISDVIWWPIPGCAKTGQSKYNEIPRTE*L**YSLFLEEPVKPIASFFYHQ*CHLVANSRLCNQLKLIQRIGLSINLACS*FRNFQTSKRTPWIFST*IFKIQKMLQHIVKIYPHKMLTSRIIQLKEKQPRGPLAL*PTKFW**SQKSVENLQTCQ*K 474 HSP 5 Score: 369.009 bits (799), Expect = 4.43167e-103 Query: 3 FH*HVCRFSTDF*LYYQNLVGYKASGPLGCFSFN*IILEVNILCGYIFTMC*SIFWILKI*VLKIHGVRLLV*KFLNQEQARFMERPILWISLS*LHNLELATK*HH*W*KKLAIGLTGSSRNKLYYYNYSVRGISLYLLCPVFAQPGIGHQMTSLM 473 HSP 6 Score: 321.813 bits (696), Expect = 7.20309e-89 Query: 3 HQRCHLVANSRLCKDRTK*I**DTTYRXXXXXQFIS*RTCQTNR*LLLPSVMSFGGQFQVVQST*TYPKNWPLHKPCLLLIQEFSDQQADTVDLQHLNFQNPKNASTHSEDIPTQNVNLKDNSIEGKTA*RTTSLVAN*ILXXXXXXXXXXTNMSMK 473 HSP 7 Score: 288.822 bits (624), Expect = 6.09688e-79 Query: 2 FPSIELSLRLTFCVGISSLCVEAFFGF*KFRC*RSTVSACWSENS*IKSKQGLWRGQFFG*V*VDCTTWNWPPNDITDGKRS*RLV*QVLQEINCXXXXILYVVSHYIYFVLSLHNLELATK*HR*W 382 | ||||
WO454_contig17304_v2 | 5.26503e-17 | 94.29% | ||
WO454_contig17304_v2 | ||||
HSP 1 Score: 83.0867 bits (175), Expect = 5.26503e-17 Query: 38 VQRQDKVNIMRYHVQNNYNNTVYFLKNLSNQSLAS 142 HSP 2 Score: 81.2538 bits (171), Expect = 1.8597e-16 Query: 42 KKLAIGLTGSSRNKLYYYNYSVRGISLYLLCPVF 143 HSP 3 Score: 74.8389 bits (157), Expect = 1.60038e-14 Query: 43 KTGQSKYNEIPRTE*L**YSLFLEEPVKPIASFF 144 HSP 4 Score: 73.0061 bits (153), Expect = 5.65281e-14 Query: 43 KEASDWFDRFFKK*TVXXXLFCTWYLIIFTLSCL 144 HSP 5 Score: 63.3837 bits (132), Expect = 4.45543e-11 Query: 41 RS*RLV*QVLQEINCXXXXILYVVSHYIYFVLSL 142 | ||||
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