Oall_contig40271_v2

NameOall_contig40271_v2
AccessionID7193044
Sequence
GAAAGGAAGATGGGTGGAGGAACTCCCACATGTACTTTGGACGTACAGGA
CCACACCTCGTAGGTCCACGGGGGAGACCCCTTTCGCAATGACTTATGGA
GCTGAGGCAGTCATCCGNNTNGAATCTGGGTTCCCAACGACGAGAACAAG
CTCATTCAATCCAAAAGACAACGANGAAAACTTGGCAAGAGGTCTNGACT
TGATTNATGAAAAAAGGGaAAAACGCAATGGTTCAATTGGCTCATTACCA
ACAGAAGCTGAAGCNAGGTTATGANGCCCATGTAAAGACAAGACCTTTGG
TCNCAGGTGACNTGGTGCTGCGNAAAGTNGTGGGCTCGGCAAAGAACCCT
ACTTGGGGAAAACTAGGGCCAAATTGGGAAGGACCATATCGCATCACCTC
CAACGCTGGCATTGGAGCATATTTCTTGGAAGACTTGGACGG
Length442
Typecontig
Organism Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST WOA_054589_1686_2036 0-220
EST WOA_085581_1392_3665 84-338
EST WOA_139129_1191_0634 86-338
EST ROA_080222_2590_2633 256-442
EST ROA_070956_2646_3017 256-442

InterProScan Analysis

Analysis Date: 11-20-2009 (Interpro: Oall_contigs_v2)
SEQUENCE: Oall_contig40271_v2_2_ORF1 CRC64: 5DF53FE6E456A0FE LENGTH: 90 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_3_ORF2 CRC64: F13544D55C82A187 LENGTH: 79 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_4_ORF2 CRC64: E645D6C491784859 LENGTH: 84 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_5_ORF1 CRC64: 74699AE8EF8E69E3 LENGTH: 57 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_5_ORF2 CRC64: 6C6A8BDF37048F42 LENGTH: 50 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_6_ORF2 CRC64: 338313D7E158AE2D LENGTH: 68 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_2_ORF1 CRC64: 5DF53FE6E456A0FE LENGTH: 90 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_3_ORF2 CRC64: F13544D55C82A187 LENGTH: 79 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_4_ORF2 CRC64: E645D6C491784859 LENGTH: 84 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_5_ORF1 CRC64: 74699AE8EF8E69E3 LENGTH: 57 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_5_ORF2 CRC64: 6C6A8BDF37048F42 LENGTH: 50 aa
No hits reported.
SEQUENCE: Oall_contig40271_v2_6_ORF2 CRC64: 338313D7E158AE2D LENGTH: 68 aa
No hits reported.

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig14866_v26.37609e-3669.77%
AC454_contig14866_v2
HSP 1 
Score: 146.319 bits (313), Expect = 6.37609e-36
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 3
Query:  180 TWQEVXT*LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDL 437
            +W++    L +K + AMVQ+A+YQQKLK GYDAHVK RPL  GDLVLRKVVG+AKNP WGKLGPNWEGPYRI S A IG+Y L DL
Sbjct:  472 SWRKGLDLLEEKREAAMVQMAYYQQKLKRGYDAHVKLRPLAPGDLVLRKVVGTAKNPAWGKLGPNWEGPYRIVSIAXIGSYRLADL 729

HSP 2 
Score: 82.1702 bits (173), Expect = 1.31663e-16
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = -1
Query:  224 SKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFSFCW**AN*TIA 439
            SKS+ +  PM A+E MR GPSQ GPS P  GF A              GL FTWAS P FSFCW**A  TIA
Sbjct:  470 SKSASR*DPMXAIETMR*GPSQLGPSLPXAGFLAVPTTFLSTRSPGASGLSFTWASYPRFSFCW**AIWTIA 685

AC454_contig27323_v21.80715e-3275.34%
AC454_contig27323_v2
HSP 1 
Score: 134.864 bits (288), Expect = 1.80715e-32
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKRE 220
            KG WVEELPHVLWTYRTTPRRSTGETPF+MTYGAEAVI LE  FPT +TSSF+ ++NX  L +GLDL+ E+RE
Sbjct:   93 KGXWVEELPHVLWTYRTTPRRSTGETPFSMTYGAEAVIXLEXXFPTLKTSSFSLENNXGLLEKGLDLVEERRE 311

HSP 2 
Score: 95.0001 bits (201), Expect = 1.80841e-20
Identity = 45/70 (64.29%), Postives = 48/70 (68.57%), Query Frame = -2
Query:    1 SXIKSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVDLRGVVLYVQSTCGSSSTHLPF 210
            S  KSRP ++   L   L ELV  VG   S  +TASAP*VI  GVSPVDLRGVV YV  TCGSSSTHLPF
Sbjct:   92 SSTKSRPFSRRPXLFSRLKELVFXVGKXXSRXITASAP*VIENGVSPVDLRGVVRYVXRTCGSSSTHLPF 301

AC454_contig15703_v26.99919e-2271.43%
AC454_contig15703_v2
HSP 1 
Score: 68.8822 bits (144), Expect = 6.99919e-22
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAE 106
            KGRW EEL  VLW +R TPRRST ETPF+MTYG++
Sbjct:  240 KGRWTEELSSVLWAFRMTPRRSTKETPFSMTYGSD 344

HSP 2 
Score: 50.0956 bits (103), Expect = 6.99919e-22
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 3
Query:  225 AMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKN 347
            AM++LA YQQ +  GY+ + K    V GDLV+RKV+G+ K+
Sbjct:   10 AMIKLAKYQQMISRGYNKNGKA*KFVLGDLVIRKVIGNTKD 132

AC454_contig21468_v25.95221e-15100.00%
AC454_contig21468_v2
HSP 1 
Score: 76.6717 bits (161), Expect = 5.95221e-15
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPF 85
            KGRWVEELPHVLWTYRTTPRRSTGETPF
Sbjct:    1 KGRWVEELPHVLWTYRTTPRRSTGETPF 84

AC454_contig11857_v24.33356e-1167.57%
AC454_contig11857_v2
HSP 1 
Score: 63.8419 bits (133), Expect = 4.33356e-11
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAV 112
            KG W E LP VLW YRT  R  TGETPF +TYG+EAV
Sbjct:  290 KGVWPEMLPSVLWAYRTXVRTPTGETPFQLTYGSEAV 400

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown | Show Best 25 Hits
Note: Click a description for more details.
Match Name E value Identity
CC454_contig45656_v21.36624e-6973.42%
CC454_contig45656_v2
HSP 1 
Score: 143.57 bits (307), Expect = 1.36624e-69
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 3
Query:  204 LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            L ++ + AMVQ+ +YQQKLK GYDAHVK RPL  GDLVLRKVVG++KNP WGKLGPNWEGPYRI S AGIG Y L DLD
Sbjct:  581 LEERREAAMVQMXYYQQKLKRGYDAHVKLRPLXPGDLVLRKVVGTSKNPAWGKLGPNWEGPYRIVSVAGIGXYRLADLD 817

HSP 2 
Score: 136.239 bits (291), Expect = 1.36624e-69
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKRE 220
            KGRWVEELPHVLWTYRTTPRRSTGETPF+ TYGAEAVI LE GFPT +TSSF  + NX  L +GLDL+ E+RE
Sbjct:  380 KGRWVEELPHVLWTYRTTPRRSTGETPFSXTYGAEAVIPLEXGFPTLKTSSFXXEXNXGLLEKGLDLLEERRE 598

HSP 3 
Score: 92.709 bits (196), Expect = 8.00261e-38
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = -2
Query:    1 SXIKSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVDLRGVVLYVQSTCGSSSTHLPF 210
            S  KSRP ++   L   L ELV  VG P S   TASAP*VI  GVSPVDLRGVV YV  T GSSSTHLPF
Sbjct:  379 SSSKSRPFSRSPXLXSXLKELVFRVGKPXSRGXTASAP*VIENGVSPVDLRGVVRYVHRT*GSSSTHLPF 588

HSP 4 
Score: 80.7956 bits (170), Expect = 8.00261e-38
Identity = 38/72 (52.78%), Postives = 41/72 (56.94%), Query Frame = -1
Query:  224 SKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFSFCW**AN*TIA 439
            S+S+ +Y PMPA E MR GPSQFGPS PQ GF                GL FTWAS P  SFC **   TIA
Sbjct:  601 SRSASRYXPMPATETMR*GPSQFGPSLPQAGFLEVPTTFLSTRSPGXSGLSFTWASYPRXSFCX**XIWTIA 816

CC454_contig23582_v25.83898e-3579.17%
CC454_contig23582_v2
HSP 1 
Score: 144.028 bits (308), Expect = 5.83898e-35
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3
Query:  225 AMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            AMVQ+A+YQQKLK  YDAHVK RPL  GDLVLR+VVG+A+NP WGKLGPNWEGPYRITS AGIG+Y L DLD
Sbjct:   12 AMVQMAYYQQKLKRXYDAHVKLRPLAPGDLVLRRVVGTARNPXWGKLGPNWEGPYRITSIAGIGSYRLSDLD 227

HSP 2 
Score: 84.4613 bits (178), Expect = 5.03477e-17
Identity = 40/72 (55.56%), Postives = 43/72 (59.72%), Query Frame = -1
Query:  224 SKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFSFCW**AN*TIA 439
            SKS  +  PMPA+EV+R GPSQFGPS PQ GF A              GL FTWAS    SFCW**A  TIA
Sbjct:   11 SKSDNR*EPMPAIEVIR*GPSQFGPSLPQXGFLAVPTTLLSTRSPGASGLSFTWASYXRLSFCW**AIWTIA 226

CC454_contig4718_v25.44673e-3075.00%
CC454_contig4718_v2
HSP 1 
Score: 127.533 bits (272), Expect = 5.44673e-30
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLI 205
            KGRWVEELPHVLWTYRTTP RSTGETPF+MTYGAE VI LE GFPT  TSSF+P +N   L + LDL+
Sbjct:  436 KGRWVEELPHVLWTYRTTPXRSTGETPFSMTYGAEXVIPLEXGFPTLXTSSFSPXNNDGLLXKSLDLV 639

HSP 2 
Score: 90.418 bits (191), Expect = 8.10646e-19
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = -2
Query:    1 KSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVDLRGVVLYVQSTCGSSSTHLPF 201
            +SR   +  SL  GL ELV  VG P S  +T SAP*VI  GVSPVDL GVV YV  TCG+SSTHLPF
Sbjct:  435 RSRLFXRRPSLFXGLKELVXSVGKPXSKGITXSAP*VIENGVSPVDLXGVVRYVHKTCGNSSTHLPF 635

CC454_contig38361_v21.21724e-2651.28%
CC454_contig38361_v2
HSP 1 
Score: 82.1702 bits (173), Expect = 1.21724e-26
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  123 NLGSQRREQAHSIQKTTXKTWQEVXT*LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTW 356
            NL      QA S QK TX   ++    + ++ +  MVQLA+Y  KLK GYDAHVK RPL  GDLVLRKV+G+++NP W
Sbjct:  214 NLDFXH*GQALSTQKITXVFLEKSLDLVEER*EATMVQLAYY*LKLKRGYDAHVKLRPLAPGDLVLRKVMGTSRNPAW 447

HSP 2 
Score: 53.7613 bits (111), Expect = 1.21724e-26
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRS 67
            KGRWVEELPHVLWTYRTT R S
Sbjct:   94 KGRWVEELPHVLWTYRTT*RNS 159

HSP 3 
Score: 46.8882 bits (96), Expect = 1.75948e-16
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = -2
Query:   64 SLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVD 174
            SLS GL E VL V N DS  +T SAP*V+  GVSPV+
Sbjct:  155 SLSSGLKEXVLNVXNXDSKXITXSAP*VMENGVSPVN 265

HSP 4 
Score: 39.5569 bits (80), Expect = 1.75948e-16
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = -2
Query:    1 DLRGVVLYVQSTCGSSSTHLPF 66
            + R VV YV  TCG+SSTHLPF
Sbjct:   93 EFRYVVRYVHKTCGNSSTHLPF 158

HSP 5 
Score: 32.2255 bits (64), Expect = 1.75948e-16
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = -3
Query:  228 HXFXQHQVTXDQRSCLYMGXITXLQLLLVMSQLNH 332
            H F Q Q++  +    +M  I+  +L L++SQLNH
Sbjct:  319 HNFPQDQISRRKWP*FHMSIISSFELQLIVSQLNH 423

HSP 6 
Score: 66.5912 bits (139), Expect = 1.19473e-11
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query:   68 TGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDN 172
            TGETPF+MTYGAE VI LES F T RT SFNP+DN
Sbjct:  159 TGETPFSMTYGAEXVIXLESXFXTLRTXSFNPEDN 263

CC454_contig23412_v29.49833e-2561.11%
CC454_contig23412_v2
HSP 1 
Score: 110.121 bits (234), Expect = 9.49833e-25
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKR 217
            KG WVEELPHVLWTYRTTPRRSTGETPF+M YG EA+I LES FPT ++  ++   N + +   L+ I E R
Sbjct:    1 KGCWVEELPHVLWTYRTTPRRSTGETPFSMMYGMEAIIPLESXFPTLKSXQYDDMSNRDXMHDCLNTIEEXR 216

CC454_contig8732_v21.19445e-1547.83%
CC454_contig8732_v2
HSP 1 
Score: 79.8792 bits (168), Expect = 1.19445e-15
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  234 QLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            ++  YQ K+   Y+  VK R L  GDLVL KV  + ++PT GKLGP WEGPY+    +  G+Y LE LD
Sbjct:   31 KMTKYQWKMAVYYNKRVKLRRLEIGDLVLHKVTPATRDPTQGKLGPTWEGPYKFVHYSRQGSYHLETLD 237

CC454_contig6848_v25.84577e-1550.72%
CC454_contig6848_v2
HSP 1 
Score: 77.5882 bits (163), Expect = 5.84577e-15
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  234 QLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +L  YQQK+   Y+  VK R L   DLVL KV  + K+PT GKLGP WEGPYR+      G+Y LE L+
Sbjct:   13 KLMKYQQKMSKYYNNRVKLRRLDVRDLVLGKVTLATKDPTQGKLGPTWEGPYRVIHYLR*GSYHLETLN 219

CC454_contig34173_v23.9683e-1447.22%
CC454_contig34173_v2
HSP 1 
Score: 74.8389 bits (157), Expect = 3.9683e-14
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKR 217
            KG   +EL  VLW YRTT R  TGETPF + +GAE +I  E G  + R  S++   N E L   LDL+ E R
Sbjct:  200 KGICPDELLSVLWAYRTTARTPTGETPFRLAFGAEXLIPAEVGLTSYRVESYDENKNVEALRLELDLVDEVR 415

CC454_contig19865_v25.39987e-1442.47%
CC454_contig19865_v2
HSP 1 
Score: 74.3807 bits (156), Expect = 5.39987e-14
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  222 NAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +A  ++A Y+  +   +   VK R    GDLVL++V  + +NP  GKLGPNWEGPY + +    G+Y+LE LD
Sbjct:   41 DAEQRMARYKNLMARQHXXMVKPRRFNVGDLVLKRVSLATRNPAHGKLGPNWEGPYXVINXKRQGSYYLEALD 259

CC454_contig47248_v27.48986e-1450.82%
CC454_contig47248_v2
HSP 1 
Score: 73.9225 bits (155), Expect = 7.48986e-14
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENL 184
            KG W +ELP VLW YRTT R  T ETPF + YG+EAVI  E    + R   +  +DN E L
Sbjct:   11 KGIWPDELPGVLWAYRTTVRTPTXETPFKLAYGSEAVIPAEVHMASHRVMXYXEEDNGEQL 193

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown | Show Best 25 Hits
Note: Click a description for more details.
Match Name E value Identity
CCall_contig44909_v21.4185e-6973.42%
CCall_contig44909_v2
HSP 1 
Score: 143.57 bits (307), Expect = 1.4185e-69
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 3
Query:  204 LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            L ++ + AMVQ+ +YQQKLK GYDAHVK RPL  GDLVLRKVVG++KNP WGKLGPNWEGPYRI S AGIG Y L DLD
Sbjct:  581 LEERREAAMVQMXYYQQKLKRGYDAHVKLRPLXPGDLVLRKVVGTSKNPAWGKLGPNWEGPYRIVSVAGIGXYRLADLD 817

HSP 2 
Score: 136.239 bits (291), Expect = 1.4185e-69
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKRE 220
            KGRWVEELPHVLWTYRTTPRRSTGETPF+ TYGAEAVI LE GFPT +TSSF  + NX  L +GLDL+ E+RE
Sbjct:  380 KGRWVEELPHVLWTYRTTPRRSTGETPFSXTYGAEAVIPLEXGFPTLKTSSFXXEXNXGLLEKGLDLLEERRE 598

HSP 3 
Score: 92.709 bits (196), Expect = 8.3087e-38
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = -2
Query:    1 SXIKSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVDLRGVVLYVQSTCGSSSTHLPF 210
            S  KSRP ++   L   L ELV  VG P S   TASAP*VI  GVSPVDLRGVV YV  T GSSSTHLPF
Sbjct:  379 SSSKSRPFSRSPXLXSXLKELVFRVGKPXSRGXTASAP*VIENGVSPVDLRGVVRYVHRT*GSSSTHLPF 588

HSP 4 
Score: 80.7956 bits (170), Expect = 8.3087e-38
Identity = 38/72 (52.78%), Postives = 41/72 (56.94%), Query Frame = -1
Query:  224 SKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFSFCW**AN*TIA 439
            S+S+ +Y PMPA E MR GPSQFGPS PQ GF                GL FTWAS P  SFC **   TIA
Sbjct:  601 SRSASRYXPMPATETMR*GPSQFGPSLPQAGFLEVPTTFLSTRSPGXSGLSFTWASYPRXSFCX**XIWTIA 816

CCall_contig23360_v26.06232e-3579.17%
CCall_contig23360_v2
HSP 1 
Score: 144.028 bits (308), Expect = 6.06232e-35
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3
Query:  225 AMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            AMVQ+A+YQQKLK  YDAHVK RPL  GDLVLR+VVG+A+NP WGKLGPNWEGPYRITS AGIG+Y L DLD
Sbjct:   12 AMVQMAYYQQKLKRXYDAHVKLRPLAPGDLVLRRVVGTARNPXWGKLGPNWEGPYRITSIAGIGSYRLSDLD 227

HSP 2 
Score: 84.4613 bits (178), Expect = 5.22735e-17
Identity = 40/72 (55.56%), Postives = 43/72 (59.72%), Query Frame = -1
Query:  224 SKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFSFCW**AN*TIA 439
            SKS  +  PMPA+EV+R GPSQFGPS PQ GF A              GL FTWAS    SFCW**A  TIA
Sbjct:   11 SKSDNR*EPMPAIEVIR*GPSQFGPSLPQXGFLAVPTTLLSTRSPGASGLSFTWASYXRLSFCW**AIWTIA 226

CCall_contig4842_v25.65506e-3075.00%
CCall_contig4842_v2
HSP 1 
Score: 127.533 bits (272), Expect = 5.65506e-30
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLI 205
            KGRWVEELPHVLWTYRTTP RSTGETPF+MTYGAE VI LE GFPT  TSSF+P +N   L + LDL+
Sbjct:  436 KGRWVEELPHVLWTYRTTPXRSTGETPFSMTYGAEXVIPLEXGFPTLXTSSFSPXNNDGLLXKSLDLV 639

HSP 2 
Score: 90.418 bits (191), Expect = 8.41652e-19
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = -2
Query:    1 KSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVDLRGVVLYVQSTCGSSSTHLPF 201
            +SR   +  SL  GL ELV  VG P S  +T SAP*VI  GVSPVDL GVV YV  TCG+SSTHLPF
Sbjct:  435 RSRLFXRRPSLFXGLKELVXSVGKPXSKGITXSAP*VIENGVSPVDLXGVVRYVHKTCGNSSTHLPF 635

CCall_contig37962_v21.2638e-2651.28%
CCall_contig37962_v2
HSP 1 
Score: 82.1702 bits (173), Expect = 1.2638e-26
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  123 NLGSQRREQAHSIQKTTXKTWQEVXT*LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTW 356
            NL      QA S QK TX   ++    + ++ +  MVQLA+Y  KLK GYDAHVK RPL  GDLVLRKV+G+++NP W
Sbjct:  214 NLDFXH*GQALSTQKITXVFLEKSLDLVEER*EATMVQLAYY*LKLKRGYDAHVKLRPLAPGDLVLRKVMGTSRNPAW 447

HSP 2 
Score: 53.7613 bits (111), Expect = 1.2638e-26
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRS 67
            KGRWVEELPHVLWTYRTT R S
Sbjct:   94 KGRWVEELPHVLWTYRTT*RNS 159

HSP 3 
Score: 46.8882 bits (96), Expect = 1.82678e-16
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = -2
Query:   64 SLSFGLNELVLVVGNPDSXRMTASAP*VIAKGVSPVD 174
            SLS GL E VL V N DS  +T SAP*V+  GVSPV+
Sbjct:  155 SLSSGLKEXVLNVXNXDSKXITXSAP*VMENGVSPVN 265

HSP 4 
Score: 39.5569 bits (80), Expect = 1.82678e-16
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = -2
Query:    1 DLRGVVLYVQSTCGSSSTHLPF 66
            + R VV YV  TCG+SSTHLPF
Sbjct:   93 EFRYVVRYVHKTCGNSSTHLPF 158

HSP 5 
Score: 32.2255 bits (64), Expect = 1.82678e-16
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = -3
Query:  228 HXFXQHQVTXDQRSCLYMGXITXLQLLLVMSQLNH 332
            H F Q Q++  +    +M  I+  +L L++SQLNH
Sbjct:  319 HNFPQDQISRRKWP*FHMSIISSFELQLIVSQLNH 423

HSP 6 
Score: 66.5912 bits (139), Expect = 1.24043e-11
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query:   68 TGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDN 172
            TGETPF+MTYGAE VI LES F T RT SFNP+DN
Sbjct:  159 TGETPFSMTYGAEXVIXLESXFXTLRTXSFNPEDN 263

CCall_contig23190_v29.86163e-2561.11%
CCall_contig23190_v2
HSP 1 
Score: 110.121 bits (234), Expect = 9.86163e-25
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKR 217
            KG WVEELPHVLWTYRTTPRRSTGETPF+M YG EA+I LES FPT ++  ++   N + +   L+ I E R
Sbjct:    1 KGCWVEELPHVLWTYRTTPRRSTGETPFSMMYGMEAIIPLESXFPTLKSXQYDDMSNRDXMHDCLNTIEEXR 216

CCall_contig8766_v21.24014e-1547.83%
CCall_contig8766_v2
HSP 1 
Score: 79.8792 bits (168), Expect = 1.24014e-15
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  234 QLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            ++  YQ K+   Y+  VK R L  GDLVL KV  + ++PT GKLGP WEGPY+    +  G+Y LE LD
Sbjct:   31 KMTKYQWKMAVYYNKRVKLRRLEIGDLVLHKVTPATRDPTQGKLGPTWEGPYKFVHYSRQGSYHLETLD 237

CCall_contig6943_v26.06936e-1550.72%
CCall_contig6943_v2
HSP 1 
Score: 77.5882 bits (163), Expect = 6.06936e-15
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  234 QLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +L  YQQK+   Y+  VK R L   DLVL KV  + K+PT GKLGP WEGPYR+      G+Y LE L+
Sbjct:   13 KLMKYQQKMSKYYNNRVKLRRLDVRDLVLGKVTLATKDPTQGKLGPTWEGPYRVIHYLR*GSYHLETLN 219

CCall_contig33808_v24.12009e-1447.22%
CCall_contig33808_v2
HSP 1 
Score: 74.8389 bits (157), Expect = 4.12009e-14
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKR 217
            KG   +EL  VLW YRTT R  TGETPF + +GAE +I  E G  + R  S++   N E L   LDL+ E R
Sbjct:  200 KGICPDELLSVLWAYRTTARTPTGETPFRLAFGAEXLIPAEVGLTSYRVESYDENKNVEALRLELDLVDEVR 415

CCall_contig19723_v25.60641e-1442.47%
CCall_contig19723_v2
HSP 1 
Score: 74.3807 bits (156), Expect = 5.60641e-14
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  222 NAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +A  ++A Y+  +   +   VK R    GDLVL++V  + +NP  GKLGPNWEGPY + +    G+Y+LE LD
Sbjct:   41 DAEQRMARYKNLMARQHXXMVKPRRFNVGDLVLKRVSLATRNPAHGKLGPNWEGPYXVINXKRQGSYYLEALD 259

CCall_contig46569_v27.77634e-1450.82%
CCall_contig46569_v2
HSP 1 
Score: 73.9225 bits (155), Expect = 7.77634e-14
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRTSSFNPKDNXENL 184
            KG W +ELP VLW YRTT R  T ETPF + YG+EAVI  E    + R   +  +DN E L
Sbjct:   11 KGIWPDELPGVLWAYRTTVRTPTXETPFKLAYGSEAVIPAEVHMASHRVMXYXEEDNGEQL 193

Blast Hits to MedicagoProt

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_MedicagoProt_20080227)
Best 10 Hits Shown | Show Best 25 Hits | Show All Hits
Note: Click a description for more details.
Match Name E value Identity
IMGA|CT030245_29.5 RNA-directed DNA polymera8.35624e-1743.06%
e (Reverse transcriptase); Peptidase aspartic, active site; Ribonuclease H; Retrotransposon gag protein; Retrovirus capsid, C-terminal chr03_pseudomolecule_IMGAG_V2 7255561-7248385 E EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 8.35624e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct: 2083 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2154

HSP 2 
Score: 49.6766 bits (117), Expect = 8.35624e-17
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +G   +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 2152 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIGQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 2227

IMGA|AC145512_33.4 RNA-directed DNA polymera8.46808e-1743.06%
e (Reverse transcriptase); Ribonuclease H chr06_pseudomolecule_IMGAG_V2 15857351-15861019 E EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 8.46808e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct: 1009 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 1080

HSP 2 
Score: 49.6766 bits (117), Expect = 8.46808e-17
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +G   +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 1078 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIGQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 1153

IMGA|AC158173_20.4 RNA-directed DNA polymera8.46808e-1743.06%
e (Reverse transcriptase); Ribonuclease H chr06_pseudomolecule_IMGAG_V2 15826078-15822410 E EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 8.46808e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct: 1009 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 1080

HSP 2 
Score: 49.6766 bits (117), Expect = 8.46808e-17
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +G   +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 1078 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIGQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 1153

IMGA|CT954230_52.5 Ribonuclea8.56944e-1743.06%
e H chr05_pseudomolecule_IMGAG_V2 11229805-11232207 F EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 8.56944e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct:  509 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 580

HSP 2 
Score: 49.6766 bits (117), Expect = 8.56944e-17
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +G   +P  GK  PN+EGPY +      GA  L  +D
Sbjct:  578 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIGQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 653

IMGA|AC151664_28.4 Ribonuclea8.56944e-1743.06%
e H chr07_pseudomolecule_IMGAG_V2 14414647-14412245 F EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 8.56944e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct:  509 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 580

HSP 2 
Score: 49.6766 bits (117), Expect = 8.56944e-17
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +G   +P  GK  PN+EGPY +      GA  L  +D
Sbjct:  578 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIGQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 653

IMGA|AC151725_44.5 RNA-directed DNA polymera1.42431e-1643.06%
e (Reverse transcriptase); Peptidase aspartic, active site; Ribonuclease H chr03_pseudomolecule_IMGAG_V2 16515040-16519589 E EGN_Mt071002 20080227
HSP 1 
Score: 54.299 bits (129), Expect = 1.42431e-16
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  +     L+LI EKR
Sbjct: 1245 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQTRYDQLNLIEEKR 1316

HSP 2 
Score: 49.2914 bits (116), Expect = 1.42431e-16
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V+ R    G+LVL++ V    +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 1314 EKRMDAMARGQSYQARMKTAFDKKVRPREFKVGELVLKRRVSQQPDPR-GKWTPNYEGPYVVKKAFSDGALILTHMD 1389

IMGA|AC147010_29.4 RNA-directed DNA polymera1.85613e-1643.06%
e (Reverse transcriptase); Ribonuclease H chr02_pseudomolecule_IMGAG_V2 27737409-27733653 F EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 1.85613e-16
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct: 1057 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 1128

HSP 2 
Score: 48.521 bits (114), Expect = 1.85613e-16
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ K+K  +D  V  R    G+LVL++ +    +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 1126 EKRMDAMARGQSYQAKMKTAFDKKVHPREFKVGELVLKRRISQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 1201

IMGA|AC126790_61.5 RNA-directed DNA polymera2.41476e-1641.67%
e (Reverse transcriptase); Ribonuclease H chr06_pseudomolecule_IMGAG_V2 13383069-13386820 E EGN_Mt071002 20080227
HSP 1 
Score: 54.299 bits (129), Expect = 2.41476e-16
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+L+ EKR
Sbjct:  987 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKR 1058

HSP 2 
Score: 48.521 bits (114), Expect = 2.41476e-16
Identity = 26/77 (33.77%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V+ R    G+LVL++ +    +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 1056 EKRMDAMARGQSYQARMKDAFDKKVRPREFKEGELVLKRRISQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 1131

IMGA|AC195566_4.4 Ribonuclea2.44079e-1643.06%
e H chr02_pseudomolecule_IMGAG_V2 6457862-6460037 F EGN_Mt071002 20080227
HSP 1 
Score: 55.4546 bits (132), Expect = 2.44079e-16
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct:  539 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYNQLNLIEEKR 610

HSP 2 
Score: 47.3654 bits (111), Expect = 2.44079e-16
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ +    +P  GK  PN+EGPY +      GA  L  +D
Sbjct:  608 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 683

IMGA|AC145218_39.4 RNA-directed DNA polymera3.09352e-1643.06%
e (Reverse transcriptase); Peptidase aspartic, active site; Ribonuclease H; Retrotransposon gag protein; Retrovirus capsid, C-terminal chr02_pseudomolecule_IMGAG_V2 21377658-21370624 H EGN_Mt071002 20080227
HSP 1 
Score: 54.6842 bits (130), Expect = 3.09352e-16
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2
Query:   11 WVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLESGFPTTRT---SSFNPKDNXENLARGLDLIXEKR 217
            W E LP+ L  YRTT R STG TPF++ YG EAV+ LE   P+ R    +  +  +  ++    L+LI EKR
Sbjct: 2083 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2154

HSP 2 
Score: 47.7506 bits (112), Expect = 3.09352e-16
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  210 KKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +K  +AM +   YQ ++K  +D  V  R    G+LVL++ V    +P  GK  PN+EGPY +      GA  L  +D
Sbjct: 2152 EKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRVSQQPDPR-GKWTPNYEGPYVVKKAFSGGALILTHMD 2227

Blast Hits to Contig V2 RO454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig6382_v21.21926e-3696.72%
RO454_contig6382_v2
HSP 1 
Score: 148.61 bits (318), Expect = 1.21926e-36
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 3
Query:  258 LKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            LK GYDAHVKTRPLV GDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD
Sbjct:    2 LKQGYDAHVKTRPLVSGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 184

HSP 2 
Score: 144.028 bits (308), Expect = 2.9204e-35
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  259 *SXVMXPM*RQDLWSQVTWCCXKXWARQRTLLGEN*GQIGKDHIASPPTLALEHISWKTWT 441
            *S VM PM*RQDLWSQVTWCC K WARQRTLLGEN*GQIGKDHIASPPTLALEHISWKTWT
Sbjct:    3 *SKVMMPM*RQDLWSQVTWCCAKSWARQRTLLGEN*GQIGKDHIASPPTLALEHISWKTWT 185

HSP 3 
Score: 138.988 bits (297), Expect = 9.60998e-34
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 2
Query:  257 AEARL*XPCKDKTFGXR*XGAAXSXGLGKEPYLGKTRAKLGRTISHHLQRWHWSIFLGRLGR 442
            AEARL* PCKDKTFG R* GAA S GLGKEPYLGKTRAKLGRTISHHLQRWHWSIFLGRLGR
Sbjct:    1 AEARL*CPCKDKTFGLR*PGAAQSRGLGKEPYLGKTRAKLGRTISHHLQRWHWSIFLGRLGR 186

HSP 4 
Score: 138.072 bits (295), Expect = 1.81381e-33
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  258 VQVFQEICSNASVGGDAIWSFPIWP*FSPSRVLCRAHXFXQHQVTXDQRSCLYMGXITXLQ 440
            VQVFQEICSNASVGGDAIWSFPIWP*FSPSRVLCRAH F QHQVT DQRSCLYMG IT LQ
Sbjct:    2 VQVFQEICSNASVGGDAIWSFPIWP*FSPSRVLCRAHDFAQHQVT*DQRSCLYMGIITLLQ 184

HSP 5 
Score: 135.781 bits (290), Expect = 8.87696e-33
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = -2
Query:  259 RPSLPRNMLQCQRWR*CDMVLPNLALVFPK*GSLPSPXLXAAPXHLXPKVLSLHGXHNLAS 441
            RPSLPRNMLQCQRWR*CDMVLPNLALVFPK*GSLPSP L AAP HL PKVLSLHG HNLAS
Sbjct:    3 RPSLPRNMLQCQRWR*CDMVLPNLALVFPK*GSLPSPRLCAAPGHLRPKVLSLHGHHNLAS 185

HSP 6 
Score: 115.619 bits (246), Expect = 1.04084e-26
Identity = 50/62 (80.65%), Postives = 50/62 (80.65%), Query Frame = -1
Query:  257 PSKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEXXXXXXXXXXXTKGLVFTWAS*PXFS 442
            PSKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAE           TKGLVFTWAS*P FS
Sbjct:    1 PSKSSKKYAPMPALEVMRYGPSQFGPSFPQVGFFAEPTTLRSTRSPETKGLVFTWAS*PCFS 186

RO454_contig26013_v22.67554e-1447.95%
RO454_contig26013_v2
HSP 1 
Score: 74.3807 bits (156), Expect = 2.67554e-14
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  222 NAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGPNWEGPYRITSNAGIGAYFLEDLD 440
            +A  + A Y+  +   +DA VK R     DLVL+KV  + KNP  GKLGPN EGPYRI +    G+Y+LE LD
Sbjct:   69 DAEERTARYKNLMARQHDAMVKPRRFNIRDLVLKKVSLATKNPAHGKLGPNXEGPYRIINCKRQGSYYLEALD 287

RO454_contig11881_v25.51973e-1158.54%
RO454_contig11881_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 5.51973e-11
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2
Query:    2 KGRWVEELPHVLWTYRTTPRRSTGETPFAMTYGAEAVIRLE 124
            KG W +ELP VLW Y+TT R  TGETPF + Y +EA+I  E
Sbjct:  203 KGVWPDELPXVLWAYKTTVRTPTGETPFKLAYRSEAIIPAE 325

Blast Hits to Contigs V2 WO454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig4787_v24.85742e-4591.14%
WO454_contig4787_v2
HSP 1 
Score: 176.103 bits (378), Expect = 4.85742e-45
Identity = 72/79 (91.14%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  100 S*GSHPXXIWVPNDENKLIQSKRQRRKLGKRSXLD**KKGKTQWFNWLITNRS*SXVMXPM*RQDLWSQVTWCCXKXWA 336
            S*GSHP  IWVPNDENKLIQSKRQRRKLGKRS LD**KKGKTQWFNWLITNRS*S VM PM*RQDLWSQVTWCC K WA
Sbjct:   15 S*GSHPPRIWVPNDENKLIQSKRQRRKLGKRSRLD**KKGKTQWFNWLITNRS*SEVMTPM*RQDLWSQVTWCCVKLWA 251

HSP 2 
Score: 165.106 bits (354), Expect = 9.92737e-42
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   93 LMELRQSSXXNLGSQRREQAHSIQKTTXKTWQEVXT*LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVG 335
            L +LRQSS  NLGSQRREQAHSIQKTT KTWQEV T*LMKKGKNAMVQLAHYQQKLK GYDAHVKTRPLV GDLVLRKVVG
Sbjct:    8 LWKLRQSSA*NLGSQRREQAHSIQKTTTKTWQEV*T*LMKKGKNAMVQLAHYQQKLKRGYDAHVKTRPLVPGDLVLRKVVG 250

HSP 3 
Score: 163.731 bits (351), Expect = 2.57417e-41
Identity = 72/79 (91.14%), Postives = 72/79 (91.14%), Query Frame = -2
Query:  100 SPXLXAAPXHLXPKVLSLHGXHNLASASVGNEPIEPLRFSLFSXIKSRPLAKFSSLSFGLNELVLVVGNPDSXRMTASA 336
            SP L AAP HL PKVLSLHG HNLASASVGNEPIEPLRFSLFS IKSRPLAKFSSLSFGLNELVLVVGNPDS RMTASA
Sbjct:   15 SPQLYAAPSHLGPKVLSLHGRHNLASASVGNEPIEPLRFSLFSSIKSRPLAKFSSLSFGLNELVLVVGNPDSRRMTASA 251

HSP 4 
Score: 161.899 bits (347), Expect = 9.17013e-41
Identity = 72/79 (91.14%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  101 AEAVIRLESGFPTTRTSSFNPKDNXENLARGLDLIXEKREKRNGSIGSLPTEAEARL*XPCKDKTFGXR*XGAAXSXGL 337
            AEAVIRLESGFPTTRTSSFNPKDN ENLARGLDLI EKREKRNGSIGSLPTEAEARL* PCKDKTFG R* GAA S GL
Sbjct:   16 AEAVIRLESGFPTTRTSSFNPKDNDENLARGLDLIDEKREKRNGSIGSLPTEAEARL*RPCKDKTFGPR*LGAA*SCGL 252

HSP 5 
Score: 160.524 bits (344), Expect = 2.37782e-40
Identity = 69/79 (87.34%), Postives = 69/79 (87.34%), Query Frame = -3
Query:   99 AHXFXQHQVTXDQRSCLYMGXITXLQLLLVMSQLNHCVFPFFHXSSXDLLPSFXRCLLD*MSLFSSLGTQIXXG*LPQL 335
            AH F QHQVT DQRSCLYMG IT LQLLLVMSQLNHCVFPFFH SS DLLPSF RCLLD*MSLFSSLGTQI  G*LPQL
Sbjct:   14 AHNFTQHQVTWDQRSCLYMGVITSLQLLLVMSQLNHCVFPFFHQSSLDLLPSFRRCLLD*MSLFSSLGTQILGG*LPQL 250

HSP 6 
Score: 147.694 bits (316), Expect = 1.73119e-36
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = -1
Query:  101 KGLVFTWAS*PXFSFCW**AN*TIAFFPFFINQVXTSCQVFXVVFWIE*ACSRRWEPRFXXDDCLS 298
            KGLVFTWAS*P FSFCW**AN*TIAFFPFFINQV TSCQVF VVFWIE*ACSRRWEPRF  DDCLS
Sbjct:   16 KGLVFTWAS*PRFSFCW**AN*TIAFFPFFINQV*TSCQVFVVVFWIE*ACSRRWEPRF*ADDCLS 213

WO454_contig11581_v21.34906e-2158.18%
WO454_contig11581_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 1.34906e-21
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  204 LMKKGKNAMVQLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLG 368
            + ++ +N MVQLA+YQ KLK GYDA+VK +PL  G+LVLRKV+ +AKNP W   G
Sbjct:   67 IKERRENTMVQLAYYQHKLK*GYDANVKLKPLAPGNLVLRKVLSTAKNPAWESWG 231

HSP 2 
Score: 35.8912 bits (72), Expect = 1.34906e-21
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  356 GKTRAKLGRTISHHLQRWHWSIF 424
            GK  A LGR IS+HL  WH S+F
Sbjct:   12 GKVGA*LGRAISYHLGSWHRSVF 80

HSP 3 
Score: 53.7613 bits (111), Expect = 6.15637e-13
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = -1
Query:  350 SSKKYAPMPALEVMRYGPSQFGPSFPQV 433
            SS+KYAPMPA EV+RYGPS  GP+FP +
Sbjct:    3 SSRKYAPMPATEVIRYGPS*LGPNFPML 86

HSP 4 
Score: 33.1419 bits (66), Expect = 6.15637e-13
Identity = 19/47 (40.43%), Postives = 21/47 (44.68%), Query Frame = -2
Query:  220 FPK*GSLPSPXLXAAPXHLXPKVLSLHGXHNLASASVGNEPIEPLRF 360
            FP   SL    L   P +    V +LH  H L  A VGN PI P  F
Sbjct:   75 FPMLDSLQYLELFLTPSYQVLMVSALHWHHTLT*ACVGNMPIGPWYF 215

WO454_contig15414_v21.23329e-1368.00%
WO454_contig15414_v2
HSP 1 
Score: 45.5136 bits (93), Expect = 1.23329e-13
Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  348 PTWGKLGPNWEGPYRITSNAGIGAY 422
            P  GKLGPNWEGPYRIT+    G Y
Sbjct:    1 PAQGKLGPNWEGPYRITAWQRKGTY 75

HSP 2 
Score: 43.6807 bits (89), Expect = 1.23329e-13
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 3
Query:  234 QLAHYQQKLKXGYDAHVKTRPLVXGDLVLRKVVGSAKNPTWGKLGP 371
            +LA YQ ++   Y++ V  R    GDLVLR+V+G+A++P   K  P
Sbjct:   53 RLARYQNRMAQHYNSRVCHRDFQVGDLVLRRVMGAARDPRPRKTWP 190

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