Oall_contig40229_v2
| Name | Oall_contig40229_v2 |
|---|---|
| Accession | ID7192585 |
| Sequence | TAAGTGCCTTCAAAGTACAACCAATGTGAACCCAGAAGGTcCCAAAGTCA |
| Length | 291 |
| Type | contig |
| Organism | Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | WOA_007293_0483_2121 | 0-127 |
| EST | WOA_132116_1869_0572 | 38-291 |
| EST | ROB_007258_3639_2421 | 65-262 |
| EST | ROB_015506_3491_0838 | 66-262 |
InterProScan Analysis
Analysis Date: 11-20-2009
(Interpro: Oall_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig18680_v2 | 3.68554e-21 | 85.71% | ||
AC454_contig18680_v2 | ||||
HSP 1 Score: 51.0121 bits (105), Expect = 3.68554e-21 Query: 229 FFPFLSYMWIYYNPLLHMYKK 291 HSP 2 Score: 35.8912 bits (72), Expect = 3.68554e-21 Query: 3 DLLGSHWLYFEGT 41 HSP 3 Score: 31.7673 bits (63), Expect = 3.68554e-21 Query: 73 RKSTCFFFYSFTDISFPXISF 135 HSP 4 Score: 26.2688 bits (51), Expect = 3.68554e-21 Query: 41 PFTFVRDFG 67 HSP 5 Score: 49.6374 bits (102), Expect = 1.19799e-17 Query: 231 FCTYVAMDYNISTCNLGR 284 HSP 6 Score: 46.43 bits (95), Expect = 1.19799e-17 Query: 2 KCLQSTTNVNPEGPKVTDKCKRNQKEXXGKEISVKE*KKKQVLF 133 HSP 7 Score: 22.6031 bits (43), Expect = 1.19799e-17 Query: 141 VYCDGVRVVL 170 HSP 8 Score: 41.8479 bits (85), Expect = 8.04736e-14 Query: 230 LPKLHVDIL*SIATYVQK 283 HSP 9 Score: 37.724 bits (76), Expect = 8.04736e-14 Query: 2 LIPFTFVRDFGTFWVHIGCTLKAL 73 HSP 10 Score: 25.8106 bits (50), Expect = 8.04736e-14 Query: 84 NFKEKVPAFSFTLSQISLFL 143 HSP 11 Score: 45.9718 bits (94), Expect = 1.20641e-13 Query: 32 PEGPKVTDKCKRNQKEXXGKEISVKE*KKKQVLFL*SLL*WCKSSTI 172 HSP 12 Score: 43.6807 bits (89), Expect = 1.20641e-13 Query: 230 FLYICSNGL*YIHM*LRKGK 289 HSP 13 Score: 42.3061 bits (86), Expect = 1.76941e-12 Query: 232 FVHM*QWIIIYPHVT*EGEE 291 HSP 14 Score: 32.6837 bits (65), Expect = 1.76941e-12 Query: 3 SAFKVQPM*TQKVPKSRTNVKGIKR 77 HSP 15 Score: 25.8106 bits (50), Expect = 1.76941e-12 Query: 62 KRNQKEXXGKEISVKE*KKKQVLFL 136 HSP 16 Score: 41.8479 bits (85), Expect = 7.83678e-11 Query: 231 PS*VTCGYIIIHCYICTK 284 HSP 17 Score: 38.1822 bits (77), Expect = 7.83678e-11 Query: 42 NFKEKVPAFSFTLSQISLFLXXPFDSFYICP*LW 143 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig1804_v2 | 5.96107e-28 | 62.22% | ||
CC454_contig1804_v2 | ||||
HSP 1 Score: 62.4673 bits (130), Expect = 5.96107e-28 Query: 2 KCLQSTTNVNPEGPKVTDKCKRNQKEXXGKEISVKE*KKKQVLFL 136 HSP 2 Score: 54.6777 bits (113), Expect = 5.96107e-28 Query: 231 FCTYVAMDYNISTCNLGRGR 290 HSP 3 Score: 32.6837 bits (65), Expect = 5.96107e-28 Query: 113 KKKQVLFL*SLL*WCKSSTI 172 HSP 4 Score: 22.6031 bits (43), Expect = 5.96107e-28 Query: 186 STRSKCRF 209 HSP 5 Score: 58.3434 bits (121), Expect = 7.76453e-20 Query: 1 RKSTCFFFYSFTDISFPXISF*FLLHLSVTLGPSGFTLVVL*RHL 135 HSP 6 Score: 53.7613 bits (111), Expect = 7.76453e-20 Query: 229 FFPFLSYMWIYYNPLLHMYKK 291 HSP 7 Score: 60.1762 bits (125), Expect = 9.81292e-20 Query: 1 *VPSKYNQCEPRRSQSHGQM*KESKGXXRKRDICERVKEKAGTF 132 HSP 8 Score: 45.9718 bits (94), Expect = 9.81292e-20 Query: 232 FVHM*QWIIIYPHVT*EGEE 291 HSP 9 Score: 22.6031 bits (43), Expect = 9.81292e-20 Query: 141 VYCDGVRVVL 170 HSP 10 Score: 54.6777 bits (113), Expect = 1.01377e-16 Query: 3 NFKEKVPAFSFTLSQISLFLXXPFDSFYICP*LWDLLGSHWLYFEGT 143 HSP 11 Score: 46.8882 bits (96), Expect = 1.01377e-16 Query: 230 LPLPKLHVDIL*SIATYVQK 289 HSP 12 Score: 45.5136 bits (93), Expect = 3.02057e-13 Query: 231 SSPS*VTCGYIIIHCYICTK 290 HSP 13 Score: 37.2658 bits (75), Expect = 3.02057e-13 Query: 2 TFWVHIGCTLKAL 40 HSP 14 Score: 23.5196 bits (45), Expect = 3.02057e-13 Query: 41 PFTFVRDFG 67 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig1887_v2 | 6.18536e-28 | 62.22% | ||
CCall_contig1887_v2 | ||||
HSP 1 Score: 62.4673 bits (130), Expect = 6.18536e-28 Query: 2 KCLQSTTNVNPEGPKVTDKCKRNQKEXXGKEISVKE*KKKQVLFL 136 HSP 2 Score: 54.6777 bits (113), Expect = 6.18536e-28 Query: 231 FCTYVAMDYNISTCNLGRGR 290 HSP 3 Score: 32.6837 bits (65), Expect = 6.18536e-28 Query: 113 KKKQVLFL*SLL*WCKSSTI 172 HSP 4 Score: 22.6031 bits (43), Expect = 6.18536e-28 Query: 186 STRSKCRF 209 HSP 5 Score: 58.3434 bits (121), Expect = 8.05667e-20 Query: 1 RKSTCFFFYSFTDISFPXISF*FLLHLSVTLGPSGFTLVVL*RHL 135 HSP 6 Score: 53.7613 bits (111), Expect = 8.05667e-20 Query: 229 FFPFLSYMWIYYNPLLHMYKK 291 HSP 7 Score: 60.1762 bits (125), Expect = 1.01821e-19 Query: 1 *VPSKYNQCEPRRSQSHGQM*KESKGXXRKRDICERVKEKAGTF 132 HSP 8 Score: 45.9718 bits (94), Expect = 1.01821e-19 Query: 232 FVHM*QWIIIYPHVT*EGEE 291 HSP 9 Score: 22.6031 bits (43), Expect = 1.01821e-19 Query: 141 VYCDGVRVVL 170 HSP 10 Score: 54.6777 bits (113), Expect = 1.05192e-16 Query: 3 NFKEKVPAFSFTLSQISLFLXXPFDSFYICP*LWDLLGSHWLYFEGT 143 HSP 11 Score: 46.8882 bits (96), Expect = 1.05192e-16 Query: 230 LPLPKLHVDIL*SIATYVQK 289 HSP 12 Score: 45.5136 bits (93), Expect = 3.13422e-13 Query: 231 SSPS*VTCGYIIIHCYICTK 290 HSP 13 Score: 37.2658 bits (75), Expect = 3.13422e-13 Query: 2 TFWVHIGCTLKAL 40 HSP 14 Score: 23.5196 bits (45), Expect = 3.13422e-13 Query: 41 PFTFVRDFG 67 | ||||
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Blast Hits to Contig V2 RO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
RO454_contig787_v2 | 3.20558e-31 | 97.50% | ||
RO454_contig787_v2 | ||||
HSP 1 Score: 100.499 bits (213), Expect = 3.20558e-31 Query: 141 VYCDGVRVVLFGNSXSTRSKCRFLSICDVFFCTYVAMDYN 260 HSP 2 Score: 45.9718 bits (94), Expect = 3.20558e-31 Query: 88 KRDICERVKEKAGTFSLKF 144 HSP 3 Score: 116.536 bits (248), Expect = 2.96422e-27 Query: 89 KEISVKE*KKKQVLFL*SLL*WCKSSTIW**X*Y*E*M*IFVHL*CVFLYICSNGL* 259 HSP 4 Score: 98.6658 bits (209), Expect = 7.10161e-22 Query: 88 YYNPLLHMYKKTHHKWTKXXXXXXXXXXYQIVXXXXXHNKL*RKSTCFFFYSFTDISF 261 HSP 5 Score: 50.0956 bits (103), Expect = 1.84227e-15 Query: 207 IIIHCYICTKKHITNGQK 260 HSP 6 Score: 43.2225 bits (88), Expect = 1.84227e-15 Query: 90 NFKEKVPAFSFTLSQISL 143 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig18734_v2 | 1.84694e-47 | 93.75% | ||
WO454_contig18734_v2 | ||||
HSP 1 Score: 101.873 bits (216), Expect = 1.84694e-47 Query: 1 *VPSKYNQCEPRRSQSHGQM*KESKGXXRKRDICERVKEKAGTFSLKF 144 HSP 2 Score: 67.0494 bits (140), Expect = 1.84694e-47 Query: 141 VYCDGVRVVLFGNSXSTRSKCRFLSICDVFFCT 239 HSP 3 Score: 48.721 bits (100), Expect = 1.84694e-47 Query: 229 FFVHM*QWIIIYPHVT*EGEE 291 HSP 4 Score: 151.36 bits (324), Expect = 6.11011e-46 Query: 2 KCLQSTTNVNPEGPKVTDKCKRNQKEXXGKEISVKE*KKKQVLFL*SLL*WCKSSTIW**X*Y*E*M*IFVHL*CVFLYI 241 HSP 5 Score: 45.0554 bits (92), Expect = 6.11011e-46 Query: 231 FCTYVAMDYNISTCNLGRGR 290 HSP 6 Score: 114.245 bits (243), Expect = 1.28457e-37 Query: 1 HMYKKTHHKWTKXXXXXXXXXXYQIVXXXXXHNKL*RKSTCFFFYSFTDISFPXISF*FLLHLSVTLGPSGFTLVVL*RHL 243 HSP 7 Score: 54.2195 bits (112), Expect = 1.28457e-37 Query: 229 FFPFLSYMWIYYNPLLHMYKK 291 HSP 8 Score: 105.539 bits (224), Expect = 9.47323e-32 Query: 3 NFKEKVPAFSFTLSQISLFLXXPFDSFYICP*LWDLLGSHWLYFEGT 143 HSP 9 Score: 43.2225 bits (88), Expect = 9.47323e-32 Query: 240 SSPS*VTCGYIIIHCYI 290 HSP 10 Score: 64.3001 bits (134), Expect = 6.96632e-18 Query: 2 SXXXLLIPFTFVRDFGTFWVHIGCTLKAL 88 HSP 11 Score: 37.724 bits (76), Expect = 6.96632e-18 Query: 230 LPLPKLHVDIL*SIATYVQK 289 HSP 12 Score: 56.0524 bits (116), Expect = 8.71523e-17 Query: 3 SAFKVQPM*TQKVPKSRTNVKGIK 74 HSP 13 Score: 42.3061 bits (86), Expect = 8.71523e-17 Query: 209 FVHL*CVFLYICSNGL*YIHM*LRKGK 289 | ||||
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