Oall_contig40227_v2

NameOall_contig40227_v2
AccessionID7192574
Sequence
AGAAGTTATTCAGAACCCAGGAAAACAAAATCCAGCTTTGGTTCAAATTG
AAGGTGGTGATATTTCCCTTTTCCTCTAGAATTTTGAAATTGGTTTCTGT
TGATTAACTAGAGCATTGGAGAAAGCTTCAGCCTTTTCCTGCCCATAGGG
GATCTCCCATTGATCAGACTACTTTCATTACTGAGTTGTGAGTTTTTTAT
TAAAGGAGTGGAAGGAAAAGATACATCCATTGGGATGGAAAAGAAAGGAA
AGAATTTGTAGTGTCCATTTATTGTGTTGTTCTGTTCTCAGTTTATTTTT
ATGTTTTTATTACAAGTTGGTAATATTCTCGTGCCATGTCAACCTGTTTC
AACAACTATGAATACCACACAAAGTTATGGAAGTCAACTGAATTAGTGAG
AGAAATCAGAGTCTTCTGAATATAAGAAGAGGGAAATTGATGGTTGATGA
GGAACAACCAATCAACTCATCAAGTGTTTGTCGTCGAGTGATCTTGG
Length497
Typecontig
Organism Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ROA_105455_2598_0970 0-279
EST WOA_065460_0655_0231 239-497
EST WOA_017858_0729_0636 242-497
EST WOA_046664_0638_1267 242-497
EST WOA_049792_0710_3569 242-497

InterProScan Analysis

Analysis Date: 11-20-2009 (Interpro: Oall_contigs_v2)
SEQUENCE: Oall_contig40227_v2_2_ORF2 CRC64: FB55FA8989F0AF6C LENGTH: 58 aa
No hits reported.
SEQUENCE: Oall_contig40227_v2_6_ORF2 CRC64: 94C2066630E3BFDF LENGTH: 59 aa
No hits reported.
SEQUENCE: Oall_contig40227_v2_2_ORF2 CRC64: FB55FA8989F0AF6C LENGTH: 58 aa
No hits reported.
SEQUENCE: Oall_contig40227_v2_6_ORF2 CRC64: 94C2066630E3BFDF LENGTH: 59 aa
No hits reported.

Blast Hits to Contigs V2 WO454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig20537_v23.74221e-52100.00%
WO454_contig20537_v2
HSP 1 
Score: 199.93 bits (430), Expect = 3.74221e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 3
Query:  249 KEFVVSIYCVVLFSVYFYVFITSW*YSRAMSTCFNNYEYHTKLWKSTELVREIRVF*I*EEGN*WLMRNNQSTHQVFVVE*SW 497
            KEFVVSIYCVVLFSVYFYVFITSW*YSRAMSTCFNNYEYHTKLWKSTELVREIRVF*I*EEGN*WLMRNNQSTHQVFVVE*SW
Sbjct:    2 KEFVVSIYCVVLFSVYFYVFITSW*YSRAMSTCFNNYEYHTKLWKSTELVREIRVF*I*EEGN*WLMRNNQSTHQVFVVE*SW 250

HSP 2 
Score: 192.599 bits (414), Expect = 6.02671e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = -2
Query:  248 QDHSTTNT**VDWLFLINHQFPSSYIQKTLISLTNSVDFHNFVWYS*LLKQVDMAREYYQLVIKT*K*TENRTTQ*MDTTNSF 496
            QDHSTTNT**VDWLFLINHQFPSSYIQKTLISLTNSVDFHNFVWYS*LLKQVDMAREYYQLVIKT*K*TENRTTQ*MDTTNSF
Sbjct:    1 QDHSTTNT**VDWLFLINHQFPSSYIQKTLISLTNSVDFHNFVWYS*LLKQVDMAREYYQLVIKT*K*TENRTTQ*MDTTNSF 249

HSP 3 
Score: 112.412 bits (239), Expect = 4.31005e-39
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -3
Query:  250 TSITLCGIHSC*NRLTWHENITNL**KHKNKLRTEQHNKWTLQIL 384
            TSITLCGIHSC*NRLTWHENITNL**KHKNKLRTEQHNKWTLQIL
Sbjct:    3 TSITLCGIHSC*NRLTWHENITNL**KHKNKLRTEQHNKWTLQIL 137

HSP 4 
Score: 62.9255 bits (131), Expect = 4.31005e-39
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1
Query:  420 PRSLDDKHLMS*LVVPHQPSISLFLY 497
            PRSLDDKHLMS*LVVPHQPSISLFLY
Sbjct:  173 PRSLDDKHLMS*LVVPHQPSISLFLY 250

HSP 5 
Score: 117.452 bits (250), Expect = 9.04134e-37
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
Query:  250 KNL*CPFIVLFCSQFIFMFLLQVGNILVPCQPVSTTMNTTQSYGSQLN 393
            KNL*CPFIVLFCSQFIFMFLLQVGNILVPCQPVSTTMNTTQSYGSQLN
Sbjct:    3 KNL*CPFIVLFCSQFIFMFLLQVGNILVPCQPVSTTMNTTQSYGSQLN 146

HSP 6 
Score: 50.0956 bits (103), Expect = 9.04134e-37
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1
Query:  430 REIDG**GTTNQLIKCLSSSDL 495
            REIDG**GTTNQLIKCLSSSDL
Sbjct:  183 REIDG**GTTNQLIKCLSSSDL 248

HSP 7 
Score: 145.861 bits (312), Expect = 7.06969e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 2
Query:  308 YYKLVIFSCHVNLFQQL*IPHKVMEVN*ISERNQSLLNIRRGKLMVDEEQPINSSSVCRRVIL 496
            YYKLVIFSCHVNLFQQL*IPHKVMEVN*ISERNQSLLNIRRGKLMVDEEQPINSSSVCRRVIL
Sbjct:   61 YYKLVIFSCHVNLFQQL*IPHKVMEVN*ISERNQSLLNIRRGKLMVDEEQPINSSSVCRRVIL 249

HSP 8 
Score: 58.3434 bits (121), Expect = 1.97865e-20
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = -1
Query:  312 LP*LCVVFIVVETG*HGTRILPTC 383
            LP*LCVVFIVVETG*HGTRILPTC
Sbjct:   65 LP*LCVVFIVVETG*HGTRILPTC 136

HSP 9 
Score: 54.2195 bits (112), Expect = 1.97865e-20
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -3
Query:  430 KITRRQTLDELIGCSSSTINFP 495
            KITRRQTLDELIGCSSSTINFP
Sbjct:  183 KITRRQTLDELIGCSSSTINFP 248

tags