Oall_contig40226_v2
| Name | Oall_contig40226_v2 |
|---|---|
| Accession | ID7192569 |
| Sequence | CCAGATTGCACATTGACNCCTAAATAGAGCTCCCCAAAAGACCCACTCCC |
| Length | 616 |
| Type | contig |
| Organism | Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | WOA_143369_1471_3356 | 0-262 |
| EST | WOB_035166_2552_1549 | 198-489 |
| EST | WOB_021427_1342_3096 | 254-432 |
| EST | ROA_002917_2624_0624 | 372-616 |
InterProScan Analysis
Analysis Date: 11-20-2009
(Interpro: Oall_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig23743_v2 | 2.05988e-62 | 96.59% | ||
AC454_contig23743_v2 | ||||
HSP 1 Score: 206.803 bits (445), Expect = 2.05988e-62 Query: 50 IAKDYDNFLIFLSGCLRKLGFF*IWVCVSLVNLLRFVGECLVGVGIMQK*VLGWAQI*VEIAVFFIGGGF*ENGACDWWKVQAGEEDW 313 HSP 2 Score: 48.721 bits (100), Expect = 2.05988e-62 Query: 1 KFKLGRKIGEWVFWGALFRXQCAIW 75 HSP 3 Score: 200.388 bits (431), Expect = 3.23077e-60 Query: 50 PIFLPSLNFPPITCSIFSKSSSNKKHSYLHSDLCPAQHLFLHNPNTHQTLTHKSQQIHQTNTNPDLKKS*LSQTPR*EDQKIIIIFSND 316 HSP 4 Score: 47.8046 bits (98), Expect = 3.23077e-60 Query: 1 PDCTLTPK*SSPKDPLPNLPPQL 69 HSP 5 Score: 210.01 bits (452), Expect = 1.56483e-59 Query: 33 PKRPTPQSSSPA*TFHQSHAPFSQNPPPIKNTAISTQICAQPNTYFCIIPTPTKHSPTNLNRFTKLTQTQI*KNPSFLRHPDKKIKKLS*SLAM 314 HSP 6 Score: 35.8912 bits (72), Expect = 1.56483e-59 Query: 3 RLHIDX*IELPKRPTP 50 HSP 7 Score: 204.054 bits (439), Expect = 1.32903e-54 Query: 37 SLLKIMIIF*SSYLGV*ES*DFFRSGFVLVW*IC*DLWVSVWWVLGLCRNKCWAGHKSEWR*LCFLLEEDFEKMEHVIGGKFKLGRKIGEWVF 315 HSP 8 Score: 25.3524 bits (49), Expect = 1.32903e-54 Query: 3 ELYLGVNVQS 32 HSP 9 Score: 203.137 bits (437), Expect = 7.68554e-53 Query: 34 PKDPLPNLPPQLELSTNHMLHFLKILLQ*KTQLSPLRFVPSPTLISA*SQHPPNTHPQISTDSPN*HKPRSKKILAFSDTQIRRSKNYHN 303 HSP 10 Score: 183.893 bits (395), Expect = 4.94965e-48 Query: 75 HC*RL**FFDLLIWVSEKARIFLDLGLC*FGESVEICG*VFGGCWDYAEISVGLGTNLSGDSCVFYWRRILRKWSM*LVE 314 HSP 11 Score: 23.5196 bits (45), Expect = 4.94965e-48 Query: 2 GVGLLGXXXXXSMCNL 49 | ||||
AC454_contig22511_v2 | 1.77731e-20 | 100.00% | ||
AC454_contig22511_v2 | ||||
HSP 1 Score: 66.1329 bits (138), Expect = 1.77731e-20 Query: 50 IGGGF*ENGACDWWKVQAGEEDW 118 HSP 2 Score: 48.721 bits (100), Expect = 1.77731e-20 Query: 1 KFKLGRKIGEWVFWGALFRXQCAIW 75 HSP 3 Score: 56.0524 bits (116), Expect = 3.18143e-17 Query: 50 PIFLPSLNFPPITCSIFSKSSSN 118 HSP 4 Score: 47.8046 bits (98), Expect = 3.18143e-17 Query: 1 PDCTLTPK*SSPKDPLPNLPPQL 69 HSP 5 Score: 63.3837 bits (132), Expect = 7.17016e-16 Query: 34 PKDPLPNLPPQLELSTNHMLHFLKILLQ 117 HSP 6 Score: 35.8912 bits (72), Expect = 7.17016e-16 Query: 3 RLHIDX*IELPKRPTP 50 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig7717_v2 | 6.0605e-58 | 82.76% | ||
CC454_contig7717_v2 | ||||
HSP 1 Score: 221.007 bits (476), Expect = 6.0605e-58 Query: 254 KHTLSSPISSLFPNTNNFQSFVFVSNVHSSKFHCXXXXXXXXXXXXQLGFHSLVFLVSKTCSWRRSGFDFDVIILSSSFWGLHVNFFSLNLFVV*VIAKDYDNFLIFLSGCLRKLG 601 HSP 2 Score: 199.013 bits (428), Expect = 1.18537e-56 Query: 352 FCQNTRCLLRFHHCFPIPIISNLLFLFPMFIRPNFIAFFLSMYLLDCSSNWVFIH*CFWYQKLVVGEGLVLILM**SYPHRFGGYT 609 HSP 3 Score: 38.1822 bits (77), Expect = 1.18537e-56 Query: 256 ESLLKIMIIF*SSYLGV*ES* 318 HSP 4 Score: 215.051 bits (463), Expect = 3.76407e-56 Query: 254 S*LSQTPR*EDQKIIIIFSNDSNNKKI*RKKIYV*PPKR*G*DYYIKIKTRPSPTTSF*YQKH**MKTQLXEQSSKYIDKKKAMKFGRMNIGNKNKRLEIIGIGKQ* 574 HSP 5 Score: 205.428 bits (442), Expect = 2.96676e-53 Query: 255 PSFLRHPDKKIKKLS*SLAMTQTTKRFREKKFTCNPQNDEDRIITSKSKPDLLQLQVFDTKXXXXXXXXXXXXQVSTLTRKKQ*NLDE*TLETKTKDWKLLVLGNNDEIGEDNVCF 602 HSP 6 Score: 178.852 bits (384), Expect = 3.56215e-51 Query: 352 RVTPKTMRIGLLHQNQNQTFSNYKFLIPKTLMNENPIGXTIK*VH*QEKSNEIWTNEHWKQKQKIGNYWYWETMMKSEKTTCVLTK 609 HSP 7 Score: 40.0151 bits (81), Expect = 3.56215e-51 Query: 256 LAFSDTQIRRSKNYHN 303 HSP 8 Score: 148.152 bits (317), Expect = 1.09966e-39 Query: 255 QISLLFSCQCTYLIVXPIGFSFISVFGIKNL*LEKVWF*F*CNNPILIVLGVTRXXXXXXXXXCLSHC*RL**FFDLLIWVSEKAR 512 HSP 9 Score: 32.2255 bits (64), Expect = 1.09966e-39 Query: 564 KTHVVFSDFIIVS 602 | ||||
CC454_contig46188_v2 | 3.05177e-51 | 91.84% | ||
CC454_contig46188_v2 | ||||
HSP 1 Score: 118.369 bits (252), Expect = 3.05177e-51 Query: 50 PIFLPSLNFPPITCSIFSKSSSNKKHSYLHSDLCPAQHLFLHNPNTHQT 196 HSP 2 Score: 47.8046 bits (98), Expect = 3.05177e-51 Query: 1 PDCTLTPK*SSPKDPLPNLPPQL 69 HSP 3 Score: 46.8882 bits (96), Expect = 3.05177e-51 Query: 188 HQTLTHKSQQIHQTNTNPDLKK 253 HSP 4 Score: 42.3061 bits (86), Expect = 3.05177e-51 Query: 249 KNPSFLRHPDKKIKKL 296 HSP 5 Score: 114.245 bits (243), Expect = 1.73138e-49 Query: 50 VGVGIMQK*VLGWAQI*VEIAVFFIGGGF*ENGACDWWKVQAGEEDW 190 HSP 6 Score: 48.721 bits (100), Expect = 1.73138e-49 Query: 1 KFKLGRKIGEWVFWGALFRXQCAIW 75 HSP 7 Score: 44.5971 bits (91), Expect = 1.73138e-49 Query: 201 KARIFLDLGLC*FGESVEICG 263 HSP 8 Score: 41.8479 bits (85), Expect = 1.73138e-49 Query: 248 NFLIFLSGCLRKLGFF 295 HSP 9 Score: 121.118 bits (258), Expect = 2.60344e-45 Query: 33 PKRPTPQSSSPA*TFHQSHAPFSQNPPPIKNTAISTQICAQPNTYFCIIPTPT 191 HSP 10 Score: 45.0554 bits (92), Expect = 2.60344e-45 Query: 199 HPQISTDSPN*HKPRSKKILAF 264 HSP 11 Score: 35.8912 bits (72), Expect = 2.60344e-45 Query: 3 RLHIDX*IELPKRPTP 50 HSP 12 Score: 33.1419 bits (66), Expect = 2.60344e-45 Query: 248 KKS*LSQTPR*EDQKI 295 HSP 13 Score: 121.576 bits (259), Expect = 1.4619e-43 Query: 37 WVLGLCRNKCWAGHKSEWR*LCFLLEEDFEKMEHVIGGKFKLGRKIGEWVF 189 HSP 14 Score: 43.6807 bits (89), Expect = 1.4619e-43 Query: 199 FFRSGFVLVW*IC*DLWV 252 HSP 15 Score: 38.6404 bits (78), Expect = 1.4619e-43 Query: 234 *FFDLLIWVSEKARIFLDLGL 296 HSP 16 Score: 25.3524 bits (49), Expect = 1.4619e-43 Query: 3 ELYLGVNVQS 32 HSP 17 Score: 97.2911 bits (206), Expect = 1.23095e-33 Query: 75 GCWDYAEISVGLGTNLSGDSCVFYWRRILRKWSM*LVE 188 HSP 18 Score: 41.8479 bits (85), Expect = 1.23095e-33 Query: 200 FF*IWVCVSLVNLLRFVG 253 HSP 19 Score: 32.6837 bits (65), Expect = 1.23095e-33 Query: 247 IIF*SSYLGV*ES*DFF 297 HSP 20 Score: 23.5196 bits (45), Expect = 1.23095e-33 Query: 2 GVGLLGXXXXXSMCNL 49 HSP 21 Score: 116.536 bits (248), Expect = 1.35032e-32 Query: 34 PKDPLPNLPPQLELSTNHMLHFLKILLQ*KTQLSPLRFVPSPTLISA*SQHP 189 HSP 22 Score: 40.0151 bits (81), Expect = 1.35032e-32 Query: 198 SPTNLNRFTKLTQTQI*KNPSFLRHPDKKIKKLS*SLAMTQTTKRFR 338 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig7797_v2 | 8.08633e-66 | 90.70% | ||
CCall_contig7797_v2 | ||||
HSP 1 Score: 196.722 bits (423), Expect = 8.08633e-66 Query: 352 FCQNTRCLLRFHHCFPIPIISNLLFLFPMFIRPNFIAFFLSMYLLDCSSNWVFIH*CFWYQKLVVGEGLVLILM**SYPHRFGGYT 609 HSP 2 Score: 71.1732 bits (149), Expect = 8.08633e-66 Query: 254 FFSLNLFVV*VIAKDYDNFLIFLSGCLRKLG 346 HSP 3 Score: 178.852 bits (384), Expect = 1.63328e-59 Query: 352 RVTPKTMRIGLLHQNQNQTFSNYKFLIPKTLMNENPIGXTIK*VH*QEKSNEIWTNEHWKQKQKIGNYWYWETMMKSEKTTCVLTK 609 HSP 4 Score: 67.9658 bits (142), Expect = 1.63328e-59 Query: 255 PSFLRHPDKKIKKLS*SLAMTQTTKRFREKK 347 HSP 5 Score: 162.357 bits (348), Expect = 3.12504e-46 Query: 326 KKI*RKKIYV*PPKR*G*DYYIKIKTRPSPTTSF*YQKH**MKTQLXEQSSKYIDKKKAMKFGRMNIGNKNKRLEIIGIGKQ* 574 HSP 6 Score: 142.654 bits (305), Expect = 3.12504e-46 Query: 339 EKKFTCNPQNDEDRIITSKSKPDLLQLQVFDTKXXXXXXXXXXXXQVSTLTRKKQ*NLDE*TLETKTKDWKLLVLGNNDEIGEDNVCF 602 HSP 7 Score: 59.718 bits (124), Expect = 3.12504e-46 Query: 254 S*LSQTPR*EDQKIIIIFSNDSNNKKI*RKKIYV*PP 364 HSP 8 Score: 40.0151 bits (81), Expect = 3.12504e-46 Query: 256 LAFSDTQIRRSKNYHN 303 HSP 9 Score: 155.484 bits (333), Expect = 4.2821e-46 Query: 320 KHTLSSPISSLFPNTNNFQSFVFVSNVHSSKFHCXXXXXXXXXXXXQLGFHSLVFLVSKTCSWRRSGFDFDVIILSSSFWGLHVNFFSLNLFVV 601 HSP 10 Score: 46.43 bits (95), Expect = 4.2821e-46 Query: 255 LSHC*RL**FFDLLIWVSEKAR 320 HSP 11 Score: 109.205 bits (232), Expect = 4.3e-34 Query: 351 QISLLFSCQCTYLIVXPIGFSFISVFGIKNL*LEKVWF*F*CNNPILIVLGVTR 512 HSP 12 Score: 38.1822 bits (77), Expect = 4.3e-34 Query: 256 ESLLKIMIIF*SSYLGV*ES* 318 HSP 13 Score: 32.2255 bits (64), Expect = 4.3e-34 Query: 564 KTHVVFSDFIIVS 602 | ||||
CCall_contig10772_v2 | 3.16947e-51 | 91.84% | ||
CCall_contig10772_v2 | ||||
HSP 1 Score: 118.369 bits (252), Expect = 3.16947e-51 Query: 50 PIFLPSLNFPPITCSIFSKSSSNKKHSYLHSDLCPAQHLFLHNPNTHQT 196 HSP 2 Score: 47.8046 bits (98), Expect = 3.16947e-51 Query: 1 PDCTLTPK*SSPKDPLPNLPPQL 69 HSP 3 Score: 46.8882 bits (96), Expect = 3.16947e-51 Query: 188 HQTLTHKSQQIHQTNTNPDLKK 253 HSP 4 Score: 42.3061 bits (86), Expect = 3.16947e-51 Query: 249 KNPSFLRHPDKKIKKL 296 HSP 5 Score: 114.245 bits (243), Expect = 1.79816e-49 Query: 50 VGVGIMQK*VLGWAQI*VEIAVFFIGGGF*ENGACDWWKVQAGEEDW 190 HSP 6 Score: 48.721 bits (100), Expect = 1.79816e-49 Query: 1 KFKLGRKIGEWVFWGALFRXQCAIW 75 HSP 7 Score: 44.5971 bits (91), Expect = 1.79816e-49 Query: 201 KARIFLDLGLC*FGESVEICG 263 HSP 8 Score: 41.8479 bits (85), Expect = 1.79816e-49 Query: 248 NFLIFLSGCLRKLGFF 295 HSP 9 Score: 121.118 bits (258), Expect = 2.70385e-45 Query: 33 PKRPTPQSSSPA*TFHQSHAPFSQNPPPIKNTAISTQICAQPNTYFCIIPTPT 191 HSP 10 Score: 45.0554 bits (92), Expect = 2.70385e-45 Query: 199 HPQISTDSPN*HKPRSKKILAF 264 HSP 11 Score: 35.8912 bits (72), Expect = 2.70385e-45 Query: 3 RLHIDX*IELPKRPTP 50 HSP 12 Score: 33.1419 bits (66), Expect = 2.70385e-45 Query: 248 KKS*LSQTPR*EDQKI 295 HSP 13 Score: 121.576 bits (259), Expect = 1.51828e-43 Query: 37 WVLGLCRNKCWAGHKSEWR*LCFLLEEDFEKMEHVIGGKFKLGRKIGEWVF 189 HSP 14 Score: 43.6807 bits (89), Expect = 1.51828e-43 Query: 199 FFRSGFVLVW*IC*DLWV 252 HSP 15 Score: 38.6404 bits (78), Expect = 1.51828e-43 Query: 234 *FFDLLIWVSEKARIFLDLGL 296 HSP 16 Score: 25.3524 bits (49), Expect = 1.51828e-43 Query: 3 ELYLGVNVQS 32 HSP 17 Score: 97.2911 bits (206), Expect = 1.27843e-33 Query: 75 GCWDYAEISVGLGTNLSGDSCVFYWRRILRKWSM*LVE 188 HSP 18 Score: 41.8479 bits (85), Expect = 1.27843e-33 Query: 200 FF*IWVCVSLVNLLRFVG 253 HSP 19 Score: 32.6837 bits (65), Expect = 1.27843e-33 Query: 247 IIF*SSYLGV*ES*DFF 297 HSP 20 Score: 23.5196 bits (45), Expect = 1.27843e-33 Query: 2 GVGLLGXXXXXSMCNL 49 HSP 21 Score: 116.536 bits (248), Expect = 1.4024e-32 Query: 34 PKDPLPNLPPQLELSTNHMLHFLKILLQ*KTQLSPLRFVPSPTLISA*SQHP 189 HSP 22 Score: 40.0151 bits (81), Expect = 1.4024e-32 Query: 198 SPTNLNRFTKLTQTQI*KNPSFLRHPDKKIKKLS*SLAMTQTTKRFR 338 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig11851_v2 | 6.72853e-100 | 98.26% | ||
WO454_contig11851_v2 | ||||
HSP 1 Score: 270.494 bits (584), Expect = 6.72853e-100 Query: 3 RLHIDX*IELPKRPTPQSSSPA*TFHQSHAPFSQNPPPIKNTAISTQICAQPNTYFCIIPTPTKHSPTNLNRFTKLTQTQI*KNPSFLRHPDKKIKKLS*SLAMTQTTKRFREKK 347 HSP 2 Score: 109.663 bits (233), Expect = 6.72853e-100 Query: 326 KKI*RKKIYV*PPKR*G*DYYIKIKTRPSPTTSF*YQKH**MKTQLXEQSSKYI 487 HSP 3 Score: 271.41 bits (586), Expect = 2.38448e-99 Query: 2 QIAH*XLNRAPQKTHSPIFLPSLNFPPITCSIFSKSSSNKKHSYLHSDLCPAQHLFLHNPNTHQTLTHKSQQIHQTNTNPDLKKS*LSQTPR*EDQKIIIIFSNDSNNKKI*RKKIYV*PPK 367 HSP 4 Score: 106.914 bits (227), Expect = 2.38448e-99 Query: 352 RVTPKTMRIGLLHQNQNQTFSNYKFLIPKTLMNENPIGXTIK*VH 486 HSP 5 Score: 260.413 bits (562), Expect = 2.99437e-98 Query: 1 ESLLKIMIIF*SSYLGV*ES*DFFRSGFVLVW*IC*DLWVSVWWVLGLCRNKCWAGHKSEWR*LCFLLEEDFEKMEHVIGGKFKLGRKIGEWVFWGALFRXQCAIW 318 HSP 6 Score: 114.245 bits (243), Expect = 2.99437e-98 Query: 352 MYLLDCSSNWVFIH*CFWYQKLVVGEGLVLILM**SYPHRFGGYT 486 HSP 7 Score: 256.748 bits (554), Expect = 2.29464e-95 Query: 2 FFSLNLFVV*VIAKDYDNFLIFLSGCLRKLGFF*IWVCVSLVNLLRFVGECLVGVGIMQK*VLGWAQI*VEIAVFFIGGGF*ENGACDWWKVQAGEEDWGVGLLGXXXXXSMCNL 346 HSP 8 Score: 108.288 bits (230), Expect = 2.29464e-95 Query: 320 QLGFHSLVFLVSKTCSWRRSGFDFDVIILSSSFWGLHVNFFSLNLFVV 463 HSP 9 Score: 239.336 bits (516), Expect = 2.02488e-83 Query: 1 PDCTLTPK*SSPKDPLPNLPPQLELSTNHMLHFLKILLQ*KTQLSPLRFVPSPTLISA*SQHPPNTHPQISTDSPN*HKPRSKKILAFSDTQIRRSKNYHN 303 HSP 10 Score: 85.8359 bits (181), Expect = 2.02488e-83 Query: 336 REKKFTCNPQNDEDRIITSKSKPDLLQLQVFDTKXXXXXXXXXXXXQVSTL 488 HSP 11 Score: 211.385 bits (455), Expect = 4.36276e-81 Query: 3 LSHC*RL**FFDLLIWVSEKARIFLDLGLC*FGESVEICG*VFGGCWDYAEISVGLGTNLSGDSCVFYWRRILRKWSM*LVEXXXXXXXXXXXXXGELYLGVNVQS 320 HSP 12 Score: 105.997 bits (225), Expect = 4.36276e-81 Query: 351 QCTYLIVXPIGFSFISVFGIKNL*LEKVWF*F*CNNPILIVLGVTR 488 | ||||
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