Oall_contig40224_v2

NameOall_contig40224_v2
AccessionID7192526
Sequence
CCATAATTACTCCTCTGTGCTAACTGAAGAATGCTGTAGATGTGTAGTTT
GTACCATCATGTTCTGTCTAAGTAAAAAATAGATTGTGTTTTGTTTCATG
ATGCTGGAGCAGTCCAATAATTTGCCATGCAGAAGCTTGTTGGTGTGCCA
ATGGTACGAGACCATACCCAATGCGTGCCCTCCATTCGTTGCATTTCTGC
TAGTCTGCCATCTCTCAGCTCAAAGATTACTGAATCTTCAGCAAAAGGAA
TTGGTCGAGTAGATGCCACCTTTGGGTCACAGTAACTGCTAAGATCATTC
AGGGTTTCTGAATTCATCTCCAAGCTAGCTGCAAGATCTTCGTCAACACA
AATTTCTTCCTTCNTGTCTTTGNCTTCCTCTTGTCTTTGATTCTCANCAA
TANTATTTCCCATATATGGAAATCCAANACTTTTCCATTTCCATGTCATT
TGATCCATATACCTCAGATATACTTTTCCATCTGAACCAATTAAAAANAG
TTGATTANCTTCAAAGCATGGGCCNGGTGAGCCAACCAAGGTCACACCTT
TATATGGAGTTCCATGCTCCACCCAATTCCAGCCATCGAATGTATTCCAN
TGATATTCAACTAGTCCAC
Length619
Typecontig
Organism Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ROA_049752_2640_1943 0-229
EST WOA_119496_1113_2087 196-443
EST ROA_085873_2342_1895 361-619
EST ROA_106308_0353_0997 367-618

InterProScan Analysis

Analysis Date: 11-20-2009 (Interpro: Oall_contigs_v2)
SEQUENCE: Oall_contig40224_v2_1_ORF2 CRC64: 1544BD16DC5BF608 LENGTH: 54 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_2_ORF2 CRC64: C2EADB40DCD9132C LENGTH: 59 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_2_ORF3 CRC64: 94E08F0EE07A22FE LENGTH: 97 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_3_ORF2 CRC64: C88611F2CCB89F28 LENGTH: 57 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_4_ORF2 CRC64: A35C01CB8E4D62FE LENGTH: 70 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_6_ORF1 CRC64: 3A48827FBB7D9495 LENGTH: 173 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_1_ORF2 CRC64: 1544BD16DC5BF608 LENGTH: 54 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_2_ORF2 CRC64: C2EADB40DCD9132C LENGTH: 59 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_2_ORF3 CRC64: 94E08F0EE07A22FE LENGTH: 97 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_3_ORF2 CRC64: C88611F2CCB89F28 LENGTH: 57 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_4_ORF2 CRC64: A35C01CB8E4D62FE LENGTH: 70 aa
No hits reported.
SEQUENCE: Oall_contig40224_v2_6_ORF1 CRC64: 3A48827FBB7D9495 LENGTH: 173 aa
No hits reported.

Blast Hits to MedicagoProt

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_MedicagoProt_20080227)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
IMGA|AC146331_12.5 WD40-like chr04_p1.41373e-5558.96%
eudomolecule_IMGAG_V2 19903135-19901198 E EGN_Mt071002 20080227
HSP 1 
Score: 211.846 bits (538), Expect = 1.41373e-55
Identity = 102/173 (58.96%), Postives = 117/173 (67.63%), Query Frame = -3
Query:   99 GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNXIXENQRQXXXXXXXXEICVDEDLAASLEMNSETLNDLSSYCDPKVASTRPIPFAEDSVIFELRDGRLAEMQRMEGTHWVWSRTIGTPTSFCMANYWTAPAS 617
            GLVEY+WNT++ WNW+EHGTPYKGVT VGSPGP FE NQL LIGSDGKVYLRYMD+  WKWK  GFP +G+   +  R+                    E N E  +DL   CDPKV STRPIPF++DS IFELRDGRLAE+Q +    WVWSR IGTP S C+ NYW   AS
Sbjct:   88 GLVEYNWNTWNEWNWIEHGTPYKGVTFVGSPGPSFEGNQLLLIGSDGKVYLRYMDKNAWKWKDCGFPSLGDKNVDADREE-------------------EFNDE--DDLIFKCDPKVRSTRPIPFSDDSAIFELRDGRLAEIQLVGEKEWVWSRIIGTPNSLCLQNYWITVAS 239

Blast Hits to Populus Trichocarpa Proteins

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
fgenesh4_pg.C_LG_I0015972.36529e-4156.12%
jgi|Poptr1_1|751994|fgenesh4_pg.C_LG_I001597
HSP 1 
Score: 165.236 bits (417), Expect = 2.36529e-41
Identity = 78/139 (56.12%), Postives = 94/139 (67.63%), Query Frame = -3
Query:  201 GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNXIXENQRQXXXXXXXXEICVDEDLAASLEMNSETLNDLSSYCDPKVASTRPIPFAEDSVIFELRDGRL 617
            GLVEYHWNT DGWNW+EHGTP KG                    SDGKVY+RYMDQMTW+WK+ GFP++G  + E+Q Q        E+C+DED AASLE  +   +D +  CDPKVA TRPIPF++DSVIFELRDGR+
Sbjct:  768 GLVEYHWNTGDGWNWIEHGTPNKG--------------------SDGKVYVRYMDQMTWRWKNCGFPHVGQLMNEDQTQERGNDNNEEVCIDEDFAASLENVARKYSDFNRNCDPKVAPTRPIPFSDDSVIFELRDGRV 886

HSP 2 
Score: 69.3218 bits (168), Expect = 1.76638e-12
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = -3
Query:   99 RLAEMQRMEGTHWVWSRTIGTPTSFCMANYWTAPAS 206
            +LAEM+R+EGTHWVWSRTI TPT+ CMANYWTA AS
Sbjct:  944 KLAEMRRVEGTHWVWSRTIATPTTSCMANYWTAVAS 979

fgenesh4_pg.C_LG_IX0010771.58654e-3752.52%
jgi|Poptr1_1|768026|fgenesh4_pg.C_LG_IX001077
HSP 1 
Score: 152.525 bits (384), Expect = 1.58654e-37
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  201 GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNXIXENQRQXXXXXXXXEICVDEDLAASLEMNSETLNDLSSYCDPKVASTRPIPFAEDSVIFELRDGRL 617
            GLVEYHWNT  GWNW+EHGTP K                      DGKVY+RYMD+MTW+WK+ GFPY+G  + E+Q Q        E+C+D+D AASLE  +E  +D +  CDPKVA TRPIPF++DSVIFEL+D R+
Sbjct:  768 GLVEYHWNTGVGWNWIEHGTPNK----------------------DGKVYVRYMDKMTWRWKNCGFPYVGKLMNEDQTQEGGNDDNEEVCMDKDFAASLENVAEKYSDYNRNCDPKVAPTRPIPFSDDSVIFELKDRRV 884

Blast Hits to Contig V2 RO454

Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig14532_v24.82677e-5298.73%
RO454_contig14532_v2
HSP 1 
Score: 200.388 bits (431), Expect = 4.82677e-52
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = -3
Query:  381 GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNXIXENQRQ 617
            GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNX XENQRQ
Sbjct:   19 GLVEYHWNTFDGWNWVEHGTPYKGVTLVGSPGPCFEXNQLFLIGSDGKVYLRYMDQMTWKWKSXGFPYMGNXXXENQRQ 255

HSP 2 
Score: 196.264 bits (422), Expect = 8.36425e-51
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 2
Query:  365 CLCLPLVFDSQQXYFPYMEIQXFSISMSFDPYTSDILFHLNQLKXVDYLQSMGXVSQPRSHLYMEFHAPPNSSHRMYSXDIQLVH 619
            C CLPLVFDSQQXYFPYMEIQXFSISMSFDPYTSDILFHLNQLKXVDYLQSMGXVSQPRSHLYMEFHAPPNSSHRMYSXDIQLVH
Sbjct:    3 CXCLPLVFDSQQXYFPYMEIQXFSISMSFDPYTSDILFHLNQLKXVDYLQSMGXVSQPRSHLYMEFHAPPNSSHRMYSXDIQLVH 257

HSP 3 
Score: 193.973 bits (417), Expect = 4.1185e-50
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = -2
Query:  364 WTS*ISLEYIRWLELGGAWNSI*RCDLGWLTXPML*R*STXFNWFRWKSISEVYGSNDMEMEKXWISIYGKXYC*ESKTRGRQRQ 618
            WTS*ISLEYIRWLELGGAWNSI*RCDLGWLTXPML*R*STXFNWFRWKSISEVYGSNDMEMEKXWISIYGKX C*ESKTRGRQ Q
Sbjct:    2 WTS*ISLEYIRWLELGGAWNSI*RCDLGWLTXPML*R*STXFNWFRWKSISEVYGSNDMEMEKXWISIYGKXXC*ESKTRGRQXQ 256

HSP 4 
Score: 171.063 bits (367), Expect = 3.2272e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query:  406 FPIYGNPXLFHFHVI*SIYLRYTFPSEPIKNS*LXSKHGPGEPTKVTPLYGVPCSTQFQPSNVFQ*YSTSP 618
            FPIYGNPXLFHFHVI*SIYLRYTFPSEPIKNS*LXSKHGPGEPTKVTPLYGVPCSTQFQPSNVFQ*YSTSP
Sbjct:   44 FPIYGNPXLFHFHVI*SIYLRYTFPSEPIKNS*LXSKHGPGEPTKVTPLYGVPCSTQFQPSNVFQ*YSTSP 256

HSP 5 
Score: 166.022 bits (356), Expect = 1.06843e-41
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:  395 VD*LNIXGIHSMAGIGWSMELHIKV*PWLAHXAHALKXINXF*LVQMEKYI*GIWIK*HGNGKVLDFHIWEIXLL 619
            VD*LNIXGIHSMAGIGWSMELHIKV*PWLAHXAHALKXINXF*LVQMEKYI*GIWIK*HGNGKVLDFHIWEIXLL
Sbjct:   33 VD*LNIXGIHSMAGIGWSMELHIKV*PWLAHXAHALKXINXF*LVQMEKYI*GIWIK*HGNGKVLDFHIWEIXLL 257

HSP 6 
Score: 164.648 bits (353), Expect = 2.75365e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 3
Query:  411 HIWKSKTFPFPCHLIHIPQIYFSI*TN*KXLIXFKAWAR*ANQGHTFIWSSMLHPIPAIECIPXIFN*S 617
            HIWKSKTFPFPCHLIHIPQIYFSI*TN*KXLIXFKAWAR*ANQGHTFIWSSMLHPIPAIECIPXIFN*S
Sbjct:   49 HIWKSKTFPFPCHLIHIPQIYFSI*TN*KXLIXFKAWAR*ANQGHTFIWSSMLHPIPAIECIPXIFN*S 255

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