Oall_contig40223_v2
| Name | Oall_contig40223_v2 |
|---|---|
| Accession | ID7192520 |
| Sequence | CCTCAACATATTATTCTGATTCTATTACATTACATTTTGACAATACAATT |
| Length | 697 |
| Type | contig |
| Organism | Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | ROA_097003_0624_0858 | 0-227 |
| EST | WOA_096362_0444_3258 | 159-415 |
| EST | ROB_047279_1622_0399 | 352-611 |
| EST | WOA_042017_0815_3435 | 431-657 |
| EST | ROB_079790_1301_2322 | 437-697 |
InterProScan Analysis
Analysis Date: 11-20-2009
(Interpro: Oall_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig13739_v2 | 2.28227e-100 | 92.11% | ||
AC454_contig13739_v2 | ||||
HSP 1 Score: 329.603 bits (713), Expect = 2.28227e-100 Query: 204 LNRNENKMADAVRIDRIRMLKEQATNPDRRDKINRILTDLGKFAVDSAVNDSLKAVNGRKQVHQIVQEGFKHQPPSPSLNDEKKSEDLKLVMEELQAVMEETQEDMHKAKQGNKISAKSVSTSENPEPQKKTPNEGNKELHLPKNG*RKEFL 659 HSP 2 Score: 52.8449 bits (109), Expect = 2.28227e-100 Query: 111 KNG*RKEFLFVLGFKMGRV*RP*CLKYRKSYCQHVMVVDL 230 HSP 3 Score: 160.524 bits (344), Expect = 1.43379e-74 Query: 444 MLEPFLHNLMHLLPTVNGFERVVDGGINGELA*VR*DPVDLVPSIRIGRLLFQHTDSVNSNGVSHFVFVPI 656 HSP 4 Score: 102.79 bits (218), Expect = 1.43379e-74 Query: 228 FRKMQFLVAFVXXXXXXXXXXXXTDRFG*YLISLLCFMHVFLRFLHHSLQLLHY*FKIF 404 HSP 5 Score: 51.9285 bits (107), Expect = 1.43379e-74 Query: 116 LLPLHVDNMICDISGIKVVKLVPF*SRERIKTLFFIHF 229 HSP 6 Score: 166.481 bits (357), Expect = 1.74845e-71 Query: 232 GRCNSLLPXXXXXXXXXXXXDVLTDLADILFPCFALCMXXXXXXXXXXXXXXXNLRSSDFFSSFKEGEGG*CLNPSCTI*CTCFLPLTALRESLTAESTANLP 540 HSP 7 Score: 61.0927 bits (127), Expect = 1.74845e-71 Query: 533 TCLGPLGSG*SCPVDQDWSLALSAYG 610 HSP 8 Score: 49.6374 bits (102), Expect = 1.74845e-71 Query: 589 ACSFSIRILSILTASAILFSFRF 657 HSP 9 Score: 45.9718 bits (94), Expect = 1.74845e-71 Query: 117 YYHYMLTI*FAIFQASRSLNSSHFKAENE*KLFSLSIFRKMQFLV 251 HSP 10 Score: 172.896 bits (371), Expect = 1.2989e-70 Query: 203 VGSRCIRLCRKGSSINXXXXXXXXXRSLKILN**WRSCKL*WRKRKKTCIKQSKEIRYQPNLSVHQRIQSLRRRHQTKATRNCIFLKMDKEKSFY 487 HSP 11 Score: 83.0867 bits (175), Expect = 1.2989e-70 Query: 541 ESERKQNG*RR*N*QNPYAERASDQS*STGQDQPDPNGP 657 HSP 12 Score: 45.9718 bits (94), Expect = 1.2989e-70 Query: 115 KWIKKRVFIRSRL*NGTSLTTLMPEISQIILSTCNGSR 228 HSP 13 Score: 92.709 bits (196), Expect = 1.04286e-53 Query: 355 EAGASDCAGRVQASTSFPLFK**EEV*RS*ISNGGAASCDGGN 483 HSP 14 Score: 63.3837 bits (132), Expect = 1.04286e-53 Query: 232 DISQICQYIRESRASEEDTKRRQQGIASS 318 HSP 15 Score: 60.1762 bits (125), Expect = 1.04286e-53 Query: 572 *IGTKTKWLTPLELTESVC*KSKRPILID 658 HSP 16 Score: 40.4733 bits (82), Expect = 1.04286e-53 Query: 173 EKSFYSFSALKWDEF 217 HSP 17 Score: 23.9778 bits (46), Expect = 1.04286e-53 Query: 29 ILLYLMPKILQIVLSKCN 82 HSP 18 Score: 160.066 bits (343), Expect = 4.67493e-46 Query: 212 LFFIHF*EDAIPCCLRLVSSSEALDSLMY*QIWLISXXXXXXXXXXXXXPPSQLAAPPLLI*DLQTSSHHLKRGKEVDA*TLPAQSDAPASYR* 493 HSP 19 Score: 40.9315 bits (83), Expect = 4.67493e-46 Query: 136 QYDLRYFRHQGR*TRPILKPRTNKNSFLYPFL 231 | ||||
AC454_contig18855_v2 | 9.65294e-11 | 89.47% | ||
AC454_contig18855_v2 | ||||
HSP 1 Score: 51.0121 bits (105), Expect = 9.65294e-11 Query: 40 GFAYAFCSTLCLKYCKLYC 96 HSP 2 Score: 29.4763 bits (58), Expect = 9.65294e-11 Query: 3 KM*CNRIRIIC* 38 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig47927_v2 | 8.56756e-62 | 90.28% | ||
CC454_contig47927_v2 | ||||
HSP 1 Score: 144.487 bits (309), Expect = 8.56756e-62 Query: 2 EKSFYSFSALKWDEFNDLDA*NIANHIVNM*W**T*NNMLRICICILLYLMPKILQIVLSKCNVIESE*YVE 217 HSP 2 Score: 110.121 bits (234), Expect = 8.56756e-62 Query: 204 ETQEDMHKAKQGNKISAKSVSTSENPEPQKKTPNEGNKELHLPKNG*RKEFL 359 HSP 3 Score: 138.988 bits (297), Expect = 8.0693e-58 Query: 3 RKEFLFVLGFKMGRV*RP*CLKYRKSYCQHVMVVDLE*HVEDLHMHSALPYA*NIANCIVKM*CNRIRIIC* 218 HSP 4 Score: 102.331 bits (217), Expect = 8.0693e-58 Query: 203 KRKKTCIKQSKEIRYQPNLSVHQRIQSLRRRHQTKATRNCIFLKMDKEKSFY 358 HSP 5 Score: 157.316 bits (337), Expect = 9.43249e-53 Query: 2 LNILF*FYYITF*QYNLQYFRHKVEQNAYANPQHVILSLLPLHVDNMICDISGIKVVKLVPF*SRERIKTLFFIHF 229 HSP 6 Score: 67.0494 bits (140), Expect = 9.43249e-53 Query: 212 LFFIHF*EDAIPCCLRLVSSSEALDSLMY*QIWLIS 319 HSP 7 Score: 143.57 bits (307), Expect = 1.2059e-48 Query: 3 STYYSDSITLHFDNTICNILGIR*SRMHMQILNMLF*VYYHYMLTI*FAIFQASRSLNSSHFKAENE*KLFS 218 HSP 8 Score: 67.0494 bits (140), Expect = 1.2059e-48 Query: 228 FRKMQFLVAFVXXXXXXXXXXXXTDRFG*YLISLLCFMHVFLRF 359 HSP 9 Score: 127.075 bits (271), Expect = 6.70632e-43 Query: 40 KWIKKRVFIRSRL*NGTSLTTLMPEISQIILSTCNGSRLRITC*GFAYAFCSTLCLKYCKLYC 228 HSP 10 Score: 64.3001 bits (134), Expect = 6.70632e-43 Query: 232 DISQICQYIRESRASEEDTKRRQQGIASS 318 HSP 11 Score: 61.0927 bits (127), Expect = 6.89278e-35 Query: 232 GRCNSLLPXXXXXXXXXXXXDVLTDLADILFPCFALCM 345 HSP 12 Score: 58.8016 bits (122), Expect = 6.89278e-35 Query: 136 QYDLRYFRHQGR*TRPILKPRTNKNSFLYPF 228 HSP 13 Score: 52.3867 bits (108), Expect = 6.89278e-35 Query: 29 ITF*QYNLQYFRHKVEQNAYANPQHVILSLL 121 HSP 14 Score: 27.6434 bits (54), Expect = 6.89278e-35 Query: 114 VYYHYMLTI*FAIFQA 161 HSP 15 Score: 57.427 bits (119), Expect = 6.87487e-12 Query: 29 NNMLRICICILLYLMPKILQIVLSKCN 109 HSP 16 Score: 29.4763 bits (58), Expect = 6.87487e-12 Query: 124 LTTLMPEISQIILSTCN 174 | ||||
CC454_contig6563_v2 | 2.51821e-61 | 95.19% | ||
CC454_contig6563_v2 | ||||
HSP 1 Score: 232.463 bits (501), Expect = 2.51821e-61 Query: 348 LNRNENKMADAVRIDRIRMLKEQATNPDRRDKINRILTDLGKFAVDSAVNDSLKAVNGRKQVHQIVQEGFKHQPPSPSLNDEKKSEDLKLVMEELQAVMEETQE 659 HSP 2 Score: 112.87 bits (240), Expect = 4.20839e-58 Query: 391 NLRSSDFFSSFKEGEGG*CLNPSCTI*CTCFLPLTALRESLTAESTANLP 540 HSP 3 Score: 67.5076 bits (141), Expect = 4.20839e-58 Query: 533 TCLGPLGSG*SCPVDQDWSLALSAYG 610 HSP 4 Score: 49.6374 bits (102), Expect = 4.20839e-58 Query: 589 ACSFSIRILSILTASAILFSFRF 657 HSP 5 Score: 48.2628 bits (99), Expect = 4.20839e-58 Query: 348 FLRFLHHSLQLLHY*FKIF 404 HSP 6 Score: 163.731 bits (351), Expect = 1.23387e-40 Query: 444 MLEPFLHNLMHLLPTVNGFERVVDGGINGELA*VR*DPVDLVPSIRIGRLLFQHTDSVNSNGVSHFVFVPI 656 HSP 7 Score: 90.418 bits (191), Expect = 8.4763e-39 Query: 355 EAGASDCAGRVQASTSFPLFK**EEV*RS*ISNGGAASCDGGN 483 HSP 8 Score: 87.2105 bits (184), Expect = 8.4763e-39 Query: 541 ESERKQNG*RR*N*QNPYAERASDQS*STGQDQPDPNGP 657 HSP 9 Score: 83.0867 bits (175), Expect = 3.02052e-29 Query: 347 VGSRCIRLCRKGSSINXXXXXXXXXRSLKILN**WRSCKL*WRKRKK 487 HSP 10 Score: 62.4673 bits (130), Expect = 3.02052e-29 Query: 572 *IGTKTKWLTPLELTESVC*KSKRPILID 658 HSP 11 Score: 100.04 bits (212), Expect = 1.83725e-21 Query: 359 PPSQLAAPPLLI*DLQTSSHHLKRGKEVDA*TLPAQSDAPASYR* 493 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig47443_v2 | 8.89799e-62 | 90.28% | ||
CCall_contig47443_v2 | ||||
HSP 1 Score: 144.487 bits (309), Expect = 8.89799e-62 Query: 2 EKSFYSFSALKWDEFNDLDA*NIANHIVNM*W**T*NNMLRICICILLYLMPKILQIVLSKCNVIESE*YVE 217 HSP 2 Score: 110.121 bits (234), Expect = 8.89799e-62 Query: 204 ETQEDMHKAKQGNKISAKSVSTSENPEPQKKTPNEGNKELHLPKNG*RKEFL 359 HSP 3 Score: 138.988 bits (297), Expect = 8.38051e-58 Query: 3 RKEFLFVLGFKMGRV*RP*CLKYRKSYCQHVMVVDLE*HVEDLHMHSALPYA*NIANCIVKM*CNRIRIIC* 218 HSP 4 Score: 102.331 bits (217), Expect = 8.38051e-58 Query: 203 KRKKTCIKQSKEIRYQPNLSVHQRIQSLRRRHQTKATRNCIFLKMDKEKSFY 358 HSP 5 Score: 157.316 bits (337), Expect = 9.79628e-53 Query: 2 LNILF*FYYITF*QYNLQYFRHKVEQNAYANPQHVILSLLPLHVDNMICDISGIKVVKLVPF*SRERIKTLFFIHF 229 HSP 6 Score: 67.0494 bits (140), Expect = 9.79628e-53 Query: 212 LFFIHF*EDAIPCCLRLVSSSEALDSLMY*QIWLIS 319 HSP 7 Score: 143.57 bits (307), Expect = 1.25241e-48 Query: 3 STYYSDSITLHFDNTICNILGIR*SRMHMQILNMLF*VYYHYMLTI*FAIFQASRSLNSSHFKAENE*KLFS 218 HSP 8 Score: 67.0494 bits (140), Expect = 1.25241e-48 Query: 228 FRKMQFLVAFVXXXXXXXXXXXXTDRFG*YLISLLCFMHVFLRF 359 HSP 9 Score: 127.075 bits (271), Expect = 6.96497e-43 Query: 40 KWIKKRVFIRSRL*NGTSLTTLMPEISQIILSTCNGSRLRITC*GFAYAFCSTLCLKYCKLYC 228 HSP 10 Score: 64.3001 bits (134), Expect = 6.96497e-43 Query: 232 DISQICQYIRESRASEEDTKRRQQGIASS 318 HSP 11 Score: 61.0927 bits (127), Expect = 7.15862e-35 Query: 232 GRCNSLLPXXXXXXXXXXXXDVLTDLADILFPCFALCM 345 HSP 12 Score: 58.8016 bits (122), Expect = 7.15862e-35 Query: 136 QYDLRYFRHQGR*TRPILKPRTNKNSFLYPF 228 HSP 13 Score: 52.3867 bits (108), Expect = 7.15862e-35 Query: 29 ITF*QYNLQYFRHKVEQNAYANPQHVILSLL 121 HSP 14 Score: 27.6434 bits (54), Expect = 7.15862e-35 Query: 114 VYYHYMLTI*FAIFQA 161 HSP 15 Score: 57.427 bits (119), Expect = 7.14001e-12 Query: 29 NNMLRICICILLYLMPKILQIVLSKCN 109 HSP 16 Score: 29.4763 bits (58), Expect = 7.14001e-12 Query: 124 LTTLMPEISQIILSTCN 174 | ||||
CCall_contig40153_v2 | 2.61534e-61 | 95.19% | ||
CCall_contig40153_v2 | ||||
HSP 1 Score: 232.463 bits (501), Expect = 2.61534e-61 Query: 348 LNRNENKMADAVRIDRIRMLKEQATNPDRRDKINRILTDLGKFAVDSAVNDSLKAVNGRKQVHQIVQEGFKHQPPSPSLNDEKKSEDLKLVMEELQAVMEETQE 659 HSP 2 Score: 112.87 bits (240), Expect = 4.3707e-58 Query: 391 NLRSSDFFSSFKEGEGG*CLNPSCTI*CTCFLPLTALRESLTAESTANLP 540 HSP 3 Score: 67.5076 bits (141), Expect = 4.3707e-58 Query: 533 TCLGPLGSG*SCPVDQDWSLALSAYG 610 HSP 4 Score: 49.6374 bits (102), Expect = 4.3707e-58 Query: 589 ACSFSIRILSILTASAILFSFRF 657 HSP 5 Score: 48.2628 bits (99), Expect = 4.3707e-58 Query: 348 FLRFLHHSLQLLHY*FKIF 404 HSP 6 Score: 163.731 bits (351), Expect = 1.28146e-40 Query: 444 MLEPFLHNLMHLLPTVNGFERVVDGGINGELA*VR*DPVDLVPSIRIGRLLFQHTDSVNSNGVSHFVFVPI 656 HSP 7 Score: 90.418 bits (191), Expect = 8.80321e-39 Query: 355 EAGASDCAGRVQASTSFPLFK**EEV*RS*ISNGGAASCDGGN 483 HSP 8 Score: 87.2105 bits (184), Expect = 8.80321e-39 Query: 541 ESERKQNG*RR*N*QNPYAERASDQS*STGQDQPDPNGP 657 HSP 9 Score: 83.0867 bits (175), Expect = 3.13701e-29 Query: 347 VGSRCIRLCRKGSSINXXXXXXXXXRSLKILN**WRSCKL*WRKRKK 487 HSP 10 Score: 62.4673 bits (130), Expect = 3.13701e-29 Query: 572 *IGTKTKWLTPLELTESVC*KSKRPILID 658 HSP 11 Score: 100.04 bits (212), Expect = 1.9081e-21 Query: 359 PPSQLAAPPLLI*DLQTSSHHLKRGKEVDA*TLPAQSDAPASYR* 493 | ||||
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Blast Hits to Contig V2 RO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
RO454_contig20407_v2 | 2.91457e-72 | 100.00% | ||
RO454_contig20407_v2 | ||||
HSP 1 Score: 267.745 bits (578), Expect = 2.91457e-72 Query: 354 HFTKYRILHTTVLNRNENKMADAVRIDRIRMLKEQATNPDRRDKINRILTDLGKFAVDSAVNDSLKAVNGRKQVHQIVQEGFKHQPPSPSLNDEKKSEDLKLVMEELQAVMEET 695 HSP 2 Score: 120.66 bits (257), Expect = 7.51237e-70 Query: 391 NLRSSDFFSSFKEGEGG*CLNPSCTI*CTCFLPLTALRESLTAESTANLP 540 HSP 3 Score: 85.3777 bits (180), Expect = 7.51237e-70 Query: 589 ACSFSIRILSILTASAILFSFRFNTVVCKILYFVKC 696 HSP 4 Score: 67.5076 bits (141), Expect = 7.51237e-70 Query: 533 TCLGPLGSG*SCPVDQDWSLALSAYG 610 HSP 5 Score: 43.6807 bits (89), Expect = 7.51237e-70 Query: 354 RFLHHSLQLLHY*FKIF 404 HSP 6 Score: 124.325 bits (265), Expect = 4.15459e-52 Query: 541 TLYEVQDFTHHRVESERKQNG*RR*N*QNPYAERASDQS*STGQDQPDPNGP 696 HSP 7 Score: 96.8329 bits (205), Expect = 4.15459e-52 Query: 355 EAGASDCAGRVQASTSFPLFK**EEV*RS*ISNGGAASCDGGN 483 HSP 8 Score: 198.097 bits (426), Expect = 2.69539e-51 Query: 444 MLEPFLHNLMHLLPTVNGFERVVDGGINGELA*VR*DPVDLVPSIRIGRLLFQHTDSVNSNGVSHFVFVPIQHGGV*NPVLRKV 695 HSP 9 Score: 103.706 bits (220), Expect = 1.76197e-40 Query: 572 YTLRSTGFYTPPC*IGTKTKWLTPLELTESVC*KSKRPILID 697 HSP 10 Score: 78.5046 bits (165), Expect = 1.76197e-40 Query: 353 VGSRCIRLCRKGSSINXXXXXXXXXRSLKILN**WRSCKL*WRKR 487 HSP 11 Score: 102.79 bits (218), Expect = 7.12067e-29 Query: 359 PPSQLAAPPLLI*DLQTSSHHLKRGKEVDA*TLPAQSDAPASYR* 493 HSP 12 Score: 41.3897 bits (84), Expect = 7.12067e-29 Query: 650 SDSTRWCVKSCTS*SV 697 | ||||
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