Oall_contig40210_v2
| Name | Oall_contig40210_v2 |
|---|---|
| Accession | ID7192403 |
| Sequence | AAGCTTAAAGAATCTAAAATCGGTATTTTTGCTCAAATGTCCTTAGGTTT |
| Length | 668 |
| Type | contig |
| Organism | Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | WOB_112433_1457_3209 | 0-197 |
| EST | WOB_162152_1181_2615 | 131-397 |
| EST | WOB_064311_2238_3661 | 276-557 |
| EST | WOB_082882_1385_2199 | 313-595 |
| EST | WOB_026009_2368_1044 | 409-668 |
InterProScan Analysis
Analysis Date: 11-20-2009
(Interpro: Oall_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig22604_v2 | 1.34515e-38 | 91.14% | ||
AC454_contig22604_v2 | ||||
HSP 1 Score: 155.942 bits (334), Expect = 1.34515e-38 Query: 321 LLV*FDLNLKLYFLIVHTVQQTGL*VYLQIYLK*NK*FVSEYFTCLKLTSDEFITLINFREA*NMNNDRDLFNPKLVSE 557 HSP 2 Score: 144.945 bits (310), Expect = 2.74916e-35 Query: 322 PSRLI*FESQVILPYSAHCTANRALSLSTNLFKIE*IICL*VFHMFKTNFR*IHNIN*L*RSLKYE***RPI*SKIG** 558 HSP 3 Score: 141.279 bits (302), Expect = 3.4888e-34 Query: 322 SLTNFGLNRSLSLFIFQASLKLINVMNSSEVSFKHVKYSETNYLFYFK*ICR*T*SPXXXXXXXIRKYNLRFKSN*TRR 558 HSP 4 Score: 93.6255 bits (198), Expect = 3.06769e-27 Query: 422 NM*NTQRQIIYSILNRFVDKLKARFAVQCAL*GSIT*DSNQIKREG 559 HSP 5 Score: 44.1389 bits (90), Expect = 3.06769e-27 Query: 320 FH*PILD*IGLYHYSYFKLL*S 385 HSP 6 Score: 111.037 bits (236), Expect = 4.4295e-25 Query: 320 KPGFKFIYKSI*NRINNLSLSISHV*N*LQMNS*H*LTLEKLEI*IMIETYLIQNWLVK 496 HSP 7 Score: 49.6374 bits (102), Expect = 7.2093e-13 Query: 492 GLLYSVHYKEV*LEIQIKLNEKVN 563 HSP 8 Score: 39.5569 bits (80), Expect = 7.2093e-13 Query: 321 FTNQFWIK*VXXXXXXXXXXKVN*CYEFI*S*F*TCE 431 | ||||
AC454_contig15423_v2 | 2.24526e-33 | 82.14% | ||
AC454_contig15423_v2 | ||||
HSP 1 Score: 100.04 bits (212), Expect = 2.24526e-33 Query: 369 NLKLYFLIVHTVQQTGL*VYLQIYLK*NK*FVSEYFTCLKLTSDEFITLINFREA* 536 HSP 2 Score: 58.3434 bits (121), Expect = 2.24526e-33 Query: 273 NMNNDRDLFNPKLVSESLTVKTT***LKSPNQ 368 HSP 3 Score: 98.6658 bits (209), Expect = 4.67194e-31 Query: 370 SQVILPYSAHCTANRALSLSTNLFKIE*IICL*VFHMFKTNFR*IHNIN*L*RSL 534 HSP 4 Score: 51.9285 bits (107), Expect = 4.67194e-31 Query: 274 LKYE***RPI*SKIG**KLNSEDNVIVTKEP*S 372 HSP 5 Score: 71.1732 bits (149), Expect = 2.29576e-29 Query: 422 NM*NTQRQIIYSILNRFVDKLKARFAVQCAL*GSIT*D 535 HSP 6 Score: 62.0091 bits (129), Expect = 2.29576e-29 Query: 274 *LGLFSYYYVVFTVKLSLTNFGLNRSLSLFIFQASLKLI 390 HSP 7 Score: 29.4763 bits (58), Expect = 2.29576e-29 Query: 381 KVN*CYEFI*S*F*TCE 431 HSP 8 Score: 82.6285 bits (174), Expect = 2.44845e-25 Query: 368 KPGFKFIYKSI*NRINNLSLSISHV*N*LQMNS*H*LTLEKLE 496 HSP 9 Score: 48.721 bits (100), Expect = 2.44845e-25 Query: 272 I*IMIETYLIQNWLVKA*Q*RQRNSN*RALIN 367 HSP 10 Score: 82.6285 bits (174), Expect = 9.77063e-18 Query: 334 FGLNRSLSLFIFQASLKLINVMNSSEVSFKHVKYSETNYLFYFK*ICR*T*SPXXXXXXXIRKYNLR 534 HSP 11 Score: 23.0613 bits (44), Expect = 9.77063e-18 Query: 321 FTNQFWIK* 347 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig31328_v2 | 1.26479e-45 | 91.40% | ||
CC454_contig31328_v2 | ||||
HSP 1 Score: 180.227 bits (387), Expect = 1.26479e-45 Query: 280 PSRLI*FESQVILPYSAHCTANRALSLSTNLFKIE*IICL*VFHMFKTNFR*IHNIN*L*RSLKYE***RPI*SKIG**KLNSEDNVIVTKEP 558 HSP 2 Score: 170.604 bits (366), Expect = 9.96881e-43 Query: 282 LLV*FDLNLKLYFLIVHTVQQTGL*VYLQIYLK*NK*FVSEYFTCLKLTSDEFITLINFREA*NMNNDRDLFNPKLVSESLTVKTT***LKS 557 HSP 3 Score: 166.022 bits (356), Expect = 2.38775e-41 Query: 280 GLFSYYYVVFTVKLSLTNFGLNRSLSLFIFQASLKLINVMNSSEVSFKHVKYSETNYLFYFK*ICR*T*SPXXXXXXXIRKYNLRFKSN*TRR 558 HSP 4 Score: 133.031 bits (284), Expect = 2.03832e-31 Query: 281 KPGFKFIYKSI*NRINNLSLSISHV*N*LQMNS*H*LTLEKLEI*IMIETYLIQNWLVKA*Q*RQRNSN*RA 496 HSP 5 Score: 88.127 bits (186), Expect = 7.31464e-29 Query: 422 NM*NTQRQIIYSILNRFVDKLKARFAVQCAL*GSIT*DSNQIKREG 559 HSP 6 Score: 56.0524 bits (116), Expect = 7.31464e-29 Query: 321 FTNQFWIK*VXXXXXXXXXXKVN*CYEFI*S*F*TCE 431 HSP 7 Score: 46.43 bits (95), Expect = 1.38742e-12 Query: 320 FH*PILD*IGLYHYSYFKLL*S 385 HSP 8 Score: 42.7643 bits (87), Expect = 1.38742e-12 Query: 492 GLLYSVHYKEV*LEIQIKLNEKVN 563 | ||||
CC454_contig6708_v2 | 1.48264e-43 | 91.36% | ||
CC454_contig6708_v2 | ||||
HSP 1 Score: 173.354 bits (372), Expect = 1.48264e-43 Query: 1 KLKESKIGIFAQMSLGLIYYFEWTSLCT*FLISIIFVQNCVLI*SSTFFCIAFLDLQIFHPXTKIKYICLNNQF*TS*DYL 243 HSP 2 Score: 163.273 bits (350), Expect = 1.60544e-40 Query: 2 TNNLKKFRIDCSNKYT*FLXLDGKFEDLRMLCRKMCYSI*VHNFEQKLWKLKIKCIS*SIQSNILNLRTFEQKYRF*IL*A 244 HSP 3 Score: 162.357 bits (348), Expect = 3.03015e-40 Query: 1 IISRSLELIVQTNILDFCXWMENLKI*ECYAEKCATLYEYTILNKNYGN*KLSA*ASPFKVIY*T*GHLSKNTDFRFFKL 240 HSP 4 Score: 155.942 bits (334), Expect = 2.58552e-38 Query: 2 SLKNLKSVFLLKCP*V*YITLNGLAYALNF*FP*FLFKIVYSYRVAHFSA*HS*IFKFSIQXQKSSIFV*TINSKLLEIIC 244 HSP 5 Score: 113.787 bits (242), Expect = 1.23426e-30 Query: 87 IFNFHNFCSKLCTHIE*HIFLHSILRSSNFPSXNKNQVYLFEQSILNFLRL 239 HSP 6 Score: 36.3494 bits (73), Expect = 1.23426e-30 Query: 9 RI*NRYFCSNVLRFNI 56 HSP 7 Score: 117.911 bits (251), Expect = 7.26294e-27 Query: 63 *SQEV*N*LFKQIYLIFVXGWKI*RSKNAMQKNVLLYMSTQF*TKIMEIKN*VHKLVHS 239 | ||||
CC454_contig23462_v2 | 2.04069e-11 | 90.32% | ||
CC454_contig23462_v2 | ||||
HSP 1 Score: 66.5912 bits (139), Expect = 2.04069e-11 Query: 466 PSRLI*FESQVILPYSAHCTANRALSLSTNL 558 HSP 2 Score: 64.3001 bits (134), Expect = 9.98736e-11 Query: 470 FVDKLKARFAVQCAL*GSIT*DSNQIKREG 559 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig45807_v2 | 1.31357e-45 | 91.40% | ||
CCall_contig45807_v2 | ||||
HSP 1 Score: 180.227 bits (387), Expect = 1.31357e-45 Query: 280 PSRLI*FESQVILPYSAHCTANRALSLSTNLFKIE*IICL*VFHMFKTNFR*IHNIN*L*RSLKYE***RPI*SKIG**KLNSEDNVIVTKEP 558 HSP 2 Score: 170.604 bits (366), Expect = 1.03533e-42 Query: 282 LLV*FDLNLKLYFLIVHTVQQTGL*VYLQIYLK*NK*FVSEYFTCLKLTSDEFITLINFREA*NMNNDRDLFNPKLVSESLTVKTT***LKS 557 HSP 3 Score: 166.022 bits (356), Expect = 2.47984e-41 Query: 280 GLFSYYYVVFTVKLSLTNFGLNRSLSLFIFQASLKLINVMNSSEVSFKHVKYSETNYLFYFK*ICR*T*SPXXXXXXXIRKYNLRFKSN*TRR 558 HSP 4 Score: 133.031 bits (284), Expect = 2.11694e-31 Query: 281 KPGFKFIYKSI*NRINNLSLSISHV*N*LQMNS*H*LTLEKLEI*IMIETYLIQNWLVKA*Q*RQRNSN*RA 496 HSP 5 Score: 88.127 bits (186), Expect = 7.59676e-29 Query: 422 NM*NTQRQIIYSILNRFVDKLKARFAVQCAL*GSIT*DSNQIKREG 559 HSP 6 Score: 56.0524 bits (116), Expect = 7.59676e-29 Query: 321 FTNQFWIK*VXXXXXXXXXXKVN*CYEFI*S*F*TCE 431 HSP 7 Score: 46.43 bits (95), Expect = 1.44093e-12 Query: 320 FH*PILD*IGLYHYSYFKLL*S 385 HSP 8 Score: 42.7643 bits (87), Expect = 1.44093e-12 Query: 492 GLLYSVHYKEV*LEIQIKLNEKVN 563 | ||||
CCall_contig6852_v2 | 5.48541e-43 | 91.36% | ||
CCall_contig6852_v2 | ||||
HSP 1 Score: 171.521 bits (368), Expect = 5.48541e-43 Query: 1 KLKESKIGIFAQMSLGLIYYFEWTSLCT*FLISIIFVQNCVLI*SSTFFCIAFLDLQIFHPXTKIKYICLNNQF*TS*DYL 243 HSP 2 Score: 163.273 bits (350), Expect = 1.66736e-40 Query: 2 TNNLKKFRIDCSNKYT*FLXLDGKFEDLRMLCRKMCYSI*VHNFEQKLWKLKIKCIS*SIQSNILNLRTFEQKYRF*IL*A 244 HSP 3 Score: 161.899 bits (347), Expect = 4.32348e-40 Query: 1 IISRSLELIVQTNILDFCXWMENLKI*ECYAEKCATLYEYTILNKNYGN*KLSA*ASPFKVIY*T*GHLSKNTDFRFFKL 240 HSP 4 Score: 156.4 bits (335), Expect = 1.95456e-38 Query: 2 SLKNLKSVFLLKCP*V*YITLNGLAYALNF*FP*FLFKIVYSYRVAHFSA*HS*IFKFSIQXQKSSIFV*TINSKLLEIIC 244 HSP 5 Score: 114.245 bits (243), Expect = 4.99875e-31 Query: 87 IFNFHNFCSKLCTHIE*HIFLHSILRSSNFPSXNKNQVYLFEQSILNFLRL 239 HSP 6 Score: 37.2658 bits (75), Expect = 4.99875e-31 Query: 9 RI*NRYFCSNVLRFNI 56 HSP 7 Score: 118.827 bits (253), Expect = 3.99649e-27 Query: 63 *SQEV*N*LFKQIYLIFVXGWKI*RSKNAMQKNVLLYMSTQF*TKIMEIKN*VHKLVHS 239 | ||||
CCall_contig11325_v2 | 2.1194e-11 | 90.32% | ||
CCall_contig11325_v2 | ||||
HSP 1 Score: 66.5912 bits (139), Expect = 2.1194e-11 Query: 466 PSRLI*FESQVILPYSAHCTANRALSLSTNL 558 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-18-2009 (Blast: Oall_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig22076_v2 | 1.49875e-140 | 100.00% | ||
WO454_contig22076_v2 | ||||
HSP 1 Score: 494.1 bits (1072), Expect = 1.49875e-140 Query: 1 LA*LENKCNCNYEVIQ**VKQLTQHYNLISKEKRCLPSRLI*FESQVILPYSAHCTANRALSLSTNLFKIE*IICL*VFHMFKTNFR*IHNIN*L*RSLKYE***RPI*SKIG**KLNSEDNVIVTKEP*SMHCW*TRIHTQIISRSLELIVQTNILDFCXWMENLKI*ECYAEKCATLYEYTILNKNYGN*KLSA*ASPFKVIY*T*GHLSKNTDFRFFKL 666 HSP 2 Score: 480.812 bits (1043), Expect = 1.49909e-136 Query: 1 KLKESKIGIFAQMSLGLIYYFEWTSLCT*FLISIIFVQNCVLI*SSTFFCIAFLDLQIFHPXTKIKYICLNNQF*TS*DYLCVYSGLPTMH*LGLFSYYYVVFTVKLSLTNFGLNRSLSLFIFQASLKLINVMNSSEVSFKHVKYSETNYLFYFK*ICR*T*SPXXXXXXXIRKYNLRFKSN*TRR*TSFFF*DQIIMLGKLFYSSLDYFIIAVTFIL*LS* 666 HSP 3 Score: 435.907 bits (945), Expect = 4.93641e-123 Query: 63 N*LS*RINVTAIMK*SNDE*NSLPNIII*SQKKKDVYLLV*FDLNLKLYFLIVHTVQQTGL*VYLQIYLK*NK*FVSEYFTCLKLTSDEFITLINFREA*NMNNDRDLFNPKLVSESLTVKTT***LKSPNQCIVGRPEYTHK*SQEV*N*LFKQIYLIFVXGWKI*RSKNAMQKNVLLYMSTQF*TKIMEIKN*VHKLVHS 668 HSP 4 Score: 364.427 bits (789), Expect = 1.12685e-122 Query: 2 KPGFKFIYKSI*NRINNLSLSISHV*N*LQMNS*H*LTLEKLEI*IMIETYLIQNWLVKA*Q*RQRNSN*RALINALLVDQNTHTNNLKKFRIDCSNKYT*FLXLDGKFEDLRMLCRKMCYSI*VHNFEQKLWKLKIKCIS*SIQSNILNLRTFEQKYRF*IL*A 496 HSP 5 Score: 91.7926 bits (194), Expect = 1.12685e-122 Query: 542 ISLARE*M*LQL*SNPMMSKTAYPTL*FDLKRKKMFTFSFNL 667 HSP 6 Score: 249.875 bits (539), Expect = 7.29486e-118 Query: 2 SLKNLKSVFLLKCP*V*YITLNGLAYALNF*FP*FLFKIVYSYRVAHFSA*HS*IFKFSIQXQKSSIFV*TINSKLLEIICVCILVYQQCID*GXXXXXXXXXXXXFH*PILD*IGLYHYSYFKLL*S 385 HSP 7 Score: 190.307 bits (409), Expect = 7.29486e-118 Query: 422 NM*NTQRQIIYSILNRFVDKLKARFAVQCAL*GSIT*DSNQIKREGKHLFSFEIKL*CWVSCFTHHWITS*LQLHLFSS*AN 667 HSP 8 Score: 151.36 bits (324), Expect = 6.08737e-83 Query: 87 IFNFHNFCSKLCTHIE*HIFLHSILRSSNFPSXNKNQVYLFEQSILNFLRLFVCVFWSTNN 269 HSP 9 Score: 108.288 bits (230), Expect = 6.08737e-83 Query: 489 PGLLYSVHYKEV*LEIQIKLNEKVNIFFLLRSNYNXXXXXXXXXXXXHNCSYIYSLAKLI 668 HSP 10 Score: 58.8016 bits (122), Expect = 6.08737e-83 Query: 321 FTNQFWIK*VXXXXXXXXXXKVN*CYEFI*S*F*TCE 431 HSP 11 Score: 42.7643 bits (87), Expect = 6.08737e-83 Query: 3 A*RI*NRYFCSNVLRFNI 56 | ||||
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