ACMass_contig28889_v1

NameACMass_contig28889_v1
AccessionID4908093
Sequence
caagcaacaagatgcgtaaggctggaagaaaaaaagaaaaaagaaaaaaa
aagtaagtaaacgcccgtttggAAAAAAACcaaGACccAACccTCTCCcT
cTtCATTTTTCTtGAGCcTcTcTCCCActCTCTACCTTCACTCTtCAGCT
AGGCTCTCTccTATTCTCTGtattctAGTTATTATTTActATTGCTCTTA
AATTTGGTATATgTTTATATAATGTGAAaAAAGtATGTTtAGCAATATAT
tAAAAATatAAATAAAAATATTTTTAATAATTTTTTAATCGCcGCACCcC
GCCGCACcCGCACCctACTTTTtCAAAAATTGCCGAGTCCCGCACCCGCA
CCCGCACCCGCACCCGAATCC
Length371
Typecontig
Organism American Chestnut

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References

Dababase Accession
GFF_source flxAssembly

ESTs in this contig

Type Feature Position
EST ACHS2n_163824_3630_2647 0-211
EST ACHS1n_161969_2967_2209 0-292
EST ACWP1_104314_2814_2168 0-304
EST ACHS2n_116229_3501_2312 26-299
EST ACHS1n_111916_2742_2368 48-293
EST ACHS2n_115733_3657_3333 67-345
EST ACHS2n_049515_3697_2965 68-319
EST ACHS1n_064653_2477_1514 71-354
EST ACHS1n_063580_2529_0329 75-303
EST ACHS1n_164815_2938_1551 84-343
EST ACHS2n_094063_3738_2956 118-371
EST ACCanker_190851_0930_0150 142-256
EST ACCanker_252885_3444_2024 154-274
EST ACHS2n_149849_3964_2364 186-371
EST ACHS1n_019764_2577_3344 220-371
EST ACCanker_050489_0902_1893 230-323
EST ACHS1n_074325_2643_2099 286-371
EST ACCanker_077389_3891_2009 288-371

Blast Hits to Contigs V2 AC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_AC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig28958_v26.95086e-2887.23%
AC454_contig28958_v2
HSP 1 
Score: 91.3344 bits (193), Expect = 6.95086e-28
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = -2
Query:  107 YC*TYFFHII*TYTKFKSNSK**LEYRE*ERA*LKSEGREWERGSRK 247
            YC*TYFFHII* YTKFKSN K**LEYRE ERA LKSEGRE ERGS+K
Sbjct:   51 YC*TYFFHII*IYTKFKSNXK**LEYREXERAXLKSEGREXERGSKK 191

HSP 2 
Score: 36.8076 bits (74), Expect = 6.95086e-28
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = -1
Query:   57 KKNEEGEGWVLVFFQTGVY 113
            KKNEEGEGWV  FF  G +
Sbjct:  186 KKNEEGEGWVFGFFPNGXF 242

HSP 3 
Score: 25.3524 bits (49), Expect = 6.95086e-28
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -3
Query:    1 QPYASCCL 24
            QPYASCCL
Sbjct:  279 QPYASCCL 302

HSP 4 
Score: 84.9195 bits (179), Expect = 4.74591e-23
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:  127 TLYLHSSARLSPILCILVIIYYCS*IWYMFI*CEKSMFSN 246
            TLYLHSS RLSPILCILVIIY  S*IWY+FI*CEKSMFSN
Sbjct:   52 TLYLHSSXRLSPILCILVIIYXYS*IWYIFI*CEKSMFSN 171

HSP 5 
Score: 29.4763 bits (58), Expect = 4.74591e-23
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:   83 RPNPLPLHFS 112
            RPNPLPLHFS
Sbjct:  187 RPNPLPLHFS 216

HSP 6 
Score: 22.6031 bits (43), Expect = 4.74591e-23
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:    2 KQQDA*GW 25
            KQQDA*GW
Sbjct:  278 KQQDA*GW 301

HSP 7 
Score: 69.7986 bits (146), Expect = 3.06995e-18
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 2
Query:  188 TIALKFGICLYNVKKVCLAIY*KYK*KYF**FF 286
            TI LKFGI LYNVKKVCLAIY*KYK*KYF**FF
Sbjct:   12 TITLKFGIYLYNVKKVCLAIY*KYK*KYF**FF 110

HSP 8 
Score: 29.0181 bits (57), Expect = 3.06995e-18
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 3
Query:   72 EKNQDPTLSLFIFL 113
            +K +DPTLSLFIFL
Sbjct:  186 KKTKDPTLSLFIFL 227

HSP 9 
Score: 21.6867 bits (41), Expect = 3.06995e-18
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:    1 QATRCVRL 24
            QATRCVRL
Sbjct:  279 QATRCVRL 302

HSP 10 
Score: 63.8419 bits (133), Expect = 5.10318e-14
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = -3
Query:  106 IAKHTFFTLYKHIPNLRAIVXXXXXXXXXXEPS*RVKVESGREAQEK 246
            IAKHTFFTLYK+IPNLR  V        X EP *RVKVES REAQ K
Sbjct:   52 IAKHTFFTLYKYIPNLRVXVNNN*NTENXREPX*RVKVESXREAQRK 192

HSP 11 
Score: 26.727 bits (52), Expect = 5.10318e-14
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = -2
Query:   74 RKMKRERVGSWFF 112
            RKMKRERVGS  F
Sbjct:  187 RKMKRERVGSLVF 225

AC454_contig549_v21.61291e-1796.15%
AC454_contig549_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 1.61291e-17
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1
Query:  169 CILVIIYYCS*IWYMFI*CEKSMFSN 246
            CILVIIYYCS IWYMFI*CEKSMFSN
Sbjct:   93 CILVIIYYCSXIWYMFI*CEKSMFSN 170

HSP 2 
Score: 38.1822 bits (77), Expect = 1.61291e-17
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  281 FFNRRTPPHPHP 316
            FFNRRTPPHPHP
Sbjct:   21 FFNRRTPPHPHP 56

AC454_contig33476_v23.93872e-1774.00%
AC454_contig33476_v2
HSP 1 
Score: 83.5449 bits (176), Expect = 3.93872e-17
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  191 IALKFGICLYNVKKVCLAIY*KYK*KYF**FFNRRTPPHPHPTFSKIAES 340
            I LK       +KK CL IY*KY *KYF**FFNRRTPPH HPTFSKIAES
Sbjct:  153 IILKLAYIYNYIKKXCLXIY*KY**KYF**FFNRRTPPHXHPTFSKIAES 302

AC454_contig19619_v22.3647e-1585.00%
AC454_contig19619_v2
HSP 1 
Score: 43.2225 bits (88), Expect = 2.3647e-15
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1
Query:  172 ILVIIYYCS*IWYMFI*CEK 231
            + VIIYYCS*IWY FI*CEK
Sbjct:  128 VXVIIYYCS*IWYXFI*CEK 187

HSP 2 
Score: 43.2225 bits (88), Expect = 2.3647e-15
Identity = 20/29 (68.97%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  254 KYK*KYF**FFNRRTPPHPHPTFSKIAES 340
            K K K F   FNR TPPHPH T SKIAES
Sbjct:   15 KIKIKIFLIIFNRCTPPHPHLTRSKIAES 101

HSP 3 
Score: 23.9778 bits (46), Expect = 2.3647e-15
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  227 KKVCLAIY*KYK*K 268
            +KVCLAIY K K*K
Sbjct:   92 EKVCLAIYRK*K*K 133

Blast Hits to Contigs V2 CC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig2735_v21.37579e-2285.71%
CC454_contig2735_v2
HSP 1 
Score: 71.6314 bits (150), Expect = 1.37579e-22
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  127 TLYLHSSARLSPILCILVIIYYCS*IWYMFI*CEK 231
            TL LHSSAR  PILCILVIIYYC+*IWYMFI* EK
Sbjct:    2 TLCLHSSARFYPILCILVIIYYCA*IWYMFI*XEK 106

HSP 2 
Score: 37.2658 bits (75), Expect = 1.37579e-22
Identity = 18/26 (69.23%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  263 *KYF**FFNRRTPPHPHPTFSKIAES 340
            *KY *  FN    PHPH TFSKIAES
Sbjct:  125 *KYK*NIFNNF*SPHPHLTFSKIAES 202

HSP 3 
Score: 29.0181 bits (57), Expect = 1.37579e-22
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  227 KKVCLAIY*KYK*KYF 274
            +KVCLA Y*KYK*  F
Sbjct:  101 EKVCLAXY*KYK*NIF 148

HSP 4 
Score: 61.0927 bits (127), Expect = 1.91783e-14
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = -2
Query:  128 FHII*TYTKFKSNSK**LEYRE*ERA*LKSEGRE 229
            F II*TYTKFK NSK**LEYRE +R *LKSEGRE
Sbjct:    3 FXII*TYTKFKHNSK**LEYREWDRT*LKSEGRE 104

HSP 5 
Score: 33.1419 bits (66), Expect = 1.91783e-14
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = -3
Query:  301 DSAIFEKVGCGCG 339
            DSAIFEKV CGCG
Sbjct:  163 DSAIFEKVRCGCG 201

CC454_contig35236_v25.72161e-1291.67%
CC454_contig35236_v2
HSP 1 
Score: 51.0121 bits (105), Expect = 5.72161e-12
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  227 KKVCLAIY*KYK*KYF**FFNRRT 298
            +KVCLAIY*KYK*KYF* FFNRRT
Sbjct:  360 QKVCLAIY*KYK*KYF*KFFNRRT 431

HSP 2 
Score: 34.9748 bits (70), Expect = 5.72161e-12
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  304 APAPYFFKNCRV 339
            APAPYFFKNCRV
Sbjct:  317 APAPYFFKNCRV 352

Blast Hits to Contigs V2 CCall

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CCall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig48009_v21.6489e-2390.00%
CCall_contig48009_v2
HSP 1 
Score: 87.6687 bits (185), Expect = 1.6489e-23
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:  127 TLYLHSSARLSPILCILVIIYYCS*IWYMFI*CEKSMFSN 246
            TL LHSSAR  PILCILVIIYYC+*IWYMFI*CEKSMFSN
Sbjct:    2 TLCLHSSARFYPILCILVIIYYCA*IWYMFI*CEKSMFSN 121

HSP 2 
Score: 37.2658 bits (75), Expect = 1.6489e-23
Identity = 18/26 (69.23%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  263 *KYF**FFNRRTPPHPHPTFSKIAES 340
            *KY *  FN    PHPH TFSKIAES
Sbjct:  126 *KYK*NIFNNF*SPHPHLTFSKIAES 203

HSP 3 
Score: 81.2538 bits (171), Expect = 2.19368e-20
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = -2
Query:  128 YC*TYFFHII*TYTKFKSNSK**LEYRE*ERA*LKSEGRE 247
            YC*TYFFHII*TYTKFK NSK**LEYRE +R *LKSEGRE
Sbjct:    3 YC*TYFFHII*TYTKFKHNSK**LEYREWDRT*LKSEGRE 122

HSP 4 
Score: 33.1419 bits (66), Expect = 2.19368e-20
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = -3
Query:  301 DSAIFEKVGCGCG 339
            DSAIFEKV CGCG
Sbjct:  164 DSAIFEKVRCGCG 202

HSP 5 
Score: 62.4673 bits (130), Expect = 3.07849e-15
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 2
Query:  188 TIALKFGICLYNVKKVCLAIY*KYK*KYF 274
            TI LKFGICLYNVKKVCLAIY*KYK*  F
Sbjct:   63 TIVLKFGICLYNVKKVCLAIY*KYK*NIF 149

HSP 6 
Score: 34.5166 bits (69), Expect = 3.07849e-15
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  301 AAPAPYFFKNCRV 339
            A PAPYFFKNCRV
Sbjct:  164 AXPAPYFFKNCRV 202

CCall_contig28697_v23.76535e-1281.82%
CCall_contig28697_v2
HSP 1 
Score: 61.0927 bits (127), Expect = 3.76535e-12
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 2
Query:  188 TIALKFGICLYNVKKVCLAIY*KYK*KYF**FF 286
            TIALKFGICLYN KKVCLA  *KYK KYF*  F
Sbjct:   99 TIALKFGICLYNXKKVCLAXX*KYKXKYF*LIF 197

HSP 2 
Score: 23.9778 bits (46), Expect = 3.76535e-12
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  302 PHPHPTFSK 328
            PHPH TFS+
Sbjct:  205 PHPHSTFSR 231

CCall_contig34886_v25.93866e-1291.67%
CCall_contig34886_v2
HSP 1 
Score: 51.0121 bits (105), Expect = 5.93866e-12
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  227 KKVCLAIY*KYK*KYF**FFNRRT 298
            +KVCLAIY*KYK*KYF* FFNRRT
Sbjct:  360 QKVCLAIY*KYK*KYF*KFFNRRT 431

HSP 2 
Score: 34.9748 bits (70), Expect = 5.93866e-12
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  304 APAPYFFKNCRV 339
            APAPYFFKNCRV
Sbjct:  317 APAPYFFKNCRV 352

Blast Hits to Contig V2 Oall

Analysis Date: 11-04-2009 (Blast: AB454_contigs_v2_vs_ABall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig38265_v25.61039e-1690.00%
Oall_contig38265_v2
HSP 1 
Score: 50.0956 bits (103), Expect = 5.61039e-16
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2
Query:  281 FFNRRTPPHPHPTFSKIAES 340
            FFNRR PPHPHP FSKIAES
Sbjct:  364 FFNRRVPPHPHPPFSKIAES 423

HSP 2 
Score: 49.1792 bits (101), Expect = 5.61039e-16
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  166 LCILVIIYYCS*IWYMFI*CEK 231
            +  LVIIYYCS*IWYMF+*CEK
Sbjct:  462 IMFLVIIYYCS*IWYMFV*CEK 527

Oall_contig5602_v27.69744e-1695.00%
Oall_contig5602_v2
HSP 1 
Score: 50.5539 bits (104), Expect = 7.69744e-16
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 1
Query:  172 ILVIIYYCS*IWYMFI*CEK 231
            +LVIIYYCS*IWYMFI*CEK
Sbjct:  248 VLVIIYYCS*IWYMFI*CEK 307

HSP 2 
Score: 48.2628 bits (99), Expect = 7.69744e-16
Identity = 22/31 (70.97%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  248 Y*KYK*KYF**FFNRRTPPHPHPTFSKIAES 340
            Y K   K F**FFNRR  PH HP FSKIAES
Sbjct:  143 YIKIXXKIF**FFNRRVXPHLHPPFSKIAES 235

Oall_contig32830_v26.35388e-1290.00%
Oall_contig32830_v2
HSP 1 
Score: 43.6807 bits (89), Expect = 6.35388e-12
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 1
Query:  172 ILVIIYYCS*IWYMFI*CEK 231
            +LVIIYYCS*I YMFI*CEK
Sbjct:   96 VLVIIYYCS*I*YMFI*CEK 155

HSP 2 
Score: 29.4763 bits (58), Expect = 6.35388e-12
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  304 APAPYFFKNCRV 339
            APA YFFKNC+V
Sbjct:   12 APATYFFKNCQV 47

HSP 3 
Score: 25.3524 bits (49), Expect = 6.35388e-12
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  263 *KYF**FFNRRT 298
            *KYF* FFNRRT
Sbjct:   43 *KYF*KFFNRRT 78

Blast Hits to Contig V2 RO454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_RO454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig6893_v23.14481e-1690.00%
RO454_contig6893_v2
HSP 1 
Score: 50.0956 bits (103), Expect = 3.14481e-16
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2
Query:  281 FFNRRTPPHPHPTFSKIAES 340
            FFNRR PPHPHP FSKIAES
Sbjct:  125 FFNRRVPPHPHPPFSKIAES 184

HSP 2 
Score: 49.1792 bits (101), Expect = 3.14481e-16
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  166 LCILVIIYYCS*IWYMFI*CEK 231
            +  LVIIYYCS*IWYMF+*CEK
Sbjct:  223 IMFLVIIYYCS*IWYMFV*CEK 288

RO454_contig3529_v24.66704e-1695.00%
RO454_contig3529_v2
HSP 1 
Score: 50.5539 bits (104), Expect = 4.66704e-16
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 1
Query:  172 ILVIIYYCS*IWYMFI*CEK 231
            +LVIIYYCS*IWYMFI*CEK
Sbjct:  248 VLVIIYYCS*IWYMFI*CEK 307

HSP 2 
Score: 48.2628 bits (99), Expect = 4.66704e-16
Identity = 22/31 (70.97%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  248 Y*KYK*KYF**FFNRRTPPHPHPTFSKIAES 340
            Y K   K F**FFNRR  PH HP FSKIAES
Sbjct:  143 YIKIXXKIF**FFNRRVXPHLHPPFSKIAES 235

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