ACMass_contig28887_v1

NameACMass_contig28887_v1
AccessionID4908046
Sequence
ctttcttcctctccgcctccGGGATCGgtCACTCAaCTCACTTCACAATT
CCAACCCACTGAGTTCAGAGAAACCGAGTCAGAAAATCCAAACCCACAaC
CCC
Length103
Typecontig
Organism American Chestnut

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References

Dababase Accession
GFF_source flxAssembly

ESTs in this contig

Type Feature Position
EST ACHS2n_039845_3662_2197 0-103
EST ACHS1n_085305_2453_3344 18-103
EST ACHS2n_083341_3660_0708 25-103
EST ACCanker_222083_0432_3260 25-103
EST ACCanker_180751_1938_0385 29-103
EST ACHS2n_106308_3512_1029 30-103
EST ACCanker_211607_3496_3118 31-97
EST ACCanker_217710_2695_3016 31-103
EST ACCanker_060546_0210_1989 33-103
EST ACCanker_290132_3387_3140 35-103
EST ACCanker_021427_1590_3247 36-87
EST ACCanker_061855_0633_4054 36-90
EST ACCanker_138877_3307_3706 37-103
EST ACHS1n_009890_2203_1736 43-103
EST ACHS1n_024609_2159_1411 43-103
EST ACHS1n_127625_2602_1094 43-103
EST ACCanker_292424_3900_1219 44-103
EST ACWP1_084036_2545_1670 45-103
EST ACHS2n_121062_3549_2949 70-103
EST ACCanker_257431_2261_2531 96-103

Blast Hits to Contigs V2 AC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_AC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig3781_v21.55366e-18100.00%
AC454_contig3781_v2
HSP 1 
Score: 85.3777 bits (180), Expect = 1.55366e-18
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -3
Query:    3 GCGFGFSDSVSLNSVGWNCEVS*VTDPGGGEEE 101
            GCGFGFSDSVSLNSVGWNCEVS*VTDPGGGEEE
Sbjct:  763 GCGFGFSDSVSLNSVGWNCEVS*VTDPGGGEEE 861

HSP 2 
Score: 80.7956 bits (170), Expect = 4.12997e-17
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3
Query:    3 FFLSASGIGHSTHFTIPTH*VQRNRVRKSKPTT 101
            FFLSASGIGHSTHFTIPTH*VQRNRVRKSKPTT
Sbjct:  763 FFLSASGIGHSTHFTIPTH*VQRNRVRKSKPTT 861

HSP 3 
Score: 80.5292 bits (180), Expect = 4.96753e-17
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1
Query:    1 LSSSPPPGSVTQLTSQFQPTEFRETESENPNPQP 102
            LSSSPPPGSVTQLTSQFQPTEFRETESENPNPQP
Sbjct:  762 LSSSPPPGSVTQLTSQFQPTEFRETESENPNPQP 863

HSP 4 
Score: 77.5882 bits (163), Expect = 3.4375e-16
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1
Query:    2 GVVGLDFLTRFL*TQWVGIVK*VE*PIPEAERKK 103
            GVVGLDFLTRFL*TQWVGIVK*VE*PIPEAERKK
Sbjct:  761 GVVGLDFLTRFL*TQWVGIVK*VE*PIPEAERKK 862

Blast Hits to Contigs V2 CC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig69_v23.02642e-1693.94%
CC454_contig69_v2
HSP 1 
Score: 78.5046 bits (165), Expect = 3.02642e-16
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = -3
Query:    3 GCGFGFSDSVSLNSVGWNCEVS*VTDPGGGEEE 101
            GCGF FSDS SLNSVGWNCEVS*VTDPGGGEEE
Sbjct:   74 GCGFEFSDSGSLNSVGWNCEVS*VTDPGGGEEE 172

HSP 2 
Score: 70.2568 bits (147), Expect = 1.02901e-13
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 3
Query:    3 FFLSASGIGHSTHFTIPTH*VQRNRVRKSKPT 98
            FFLSASGIGH THFTIPTH*VQR RVRK KPT
Sbjct:   74 FFLSASGIGHLTHFTIPTH*VQRTRVRKFKPT 169

HSP 3 
Score: 68.48 bits (152), Expect = 3.52602e-13
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1
Query:    1 LSSSPPPGSVTQLTSQFQPTEFRETESENPNPQP 102
            LSSSPPPGSVT LTSQFQPTEFRE ESEN NP P
Sbjct:   72 LSSSPPPGSVT*LTSQFQPTEFREPESENSNPHP 173

HSP 4 
Score: 65.6747 bits (137), Expect = 2.20341e-12
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -1
Query:    2 VGLDFLTRFL*TQWVGIVK*VE*PIPEAERKK 97
            VGL+FLTR L*TQWVGIVK*V+*PIPEAERKK
Sbjct:   73 VGLNFLTRVL*TQWVGIVK*VK*PIPEAERKK 168

CC454_contig48501_v21.61463e-1292.86%
CC454_contig48501_v2
HSP 1 
Score: 66.1329 bits (138), Expect = 1.61463e-12
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = -3
Query:   18 GCGFGFSDSVSLNSVGWNCEVS*VTDPG 101
            GCGF FSDS SLNSVGWNCEVS*VTDPG
Sbjct:  671 GCGFEFSDSGSLNSVGWNCEVS*VTDPG 754

Blast Hits to Contigs V2 CCall

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CCall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig92_v23.12775e-1693.94%
CCall_contig92_v2
HSP 1 
Score: 78.5046 bits (165), Expect = 3.12775e-16
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = -3
Query:    3 GCGFGFSDSVSLNSVGWNCEVS*VTDPGGGEEE 101
            GCGF FSDS SLNSVGWNCEVS*VTDPGGGEEE
Sbjct:   74 GCGFEFSDSGSLNSVGWNCEVS*VTDPGGGEEE 172

HSP 2 
Score: 70.2568 bits (147), Expect = 1.06321e-13
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 3
Query:    3 FFLSASGIGHSTHFTIPTH*VQRNRVRKSKPT 98
            FFLSASGIGH THFTIPTH*VQR RVRK KPT
Sbjct:   74 FFLSASGIGHLTHFTIPTH*VQRTRVRKFKPT 169

HSP 3 
Score: 68.48 bits (152), Expect = 3.64321e-13
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1
Query:    1 LSSSPPPGSVTQLTSQFQPTEFRETESENPNPQP 102
            LSSSPPPGSVT LTSQFQPTEFRE ESEN NP P
Sbjct:   72 LSSSPPPGSVT*LTSQFQPTEFREPESENSNPHP 173

HSP 4 
Score: 65.6747 bits (137), Expect = 2.27719e-12
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -1
Query:    2 VGLDFLTRFL*TQWVGIVK*VE*PIPEAERKK 97
            VGL+FLTR L*TQWVGIVK*V+*PIPEAERKK
Sbjct:   73 VGLNFLTRVL*TQWVGIVK*VK*PIPEAERKK 168

CCall_contig10952_v21.66829e-1292.86%
CCall_contig10952_v2
HSP 1 
Score: 66.1329 bits (138), Expect = 1.66829e-12
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = -3
Query:   18 GCGFGFSDSVSLNSVGWNCEVS*VTDPG 101
            GCGF FSDS SLNSVGWNCEVS*VTDPG
Sbjct:  372 GCGFEFSDSGSLNSVGWNCEVS*VTDPG 455

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