Fagaceae Genomics Web

ACMass_contig28885_v1

Name	ACMass_contig28885_v1
Accession	ID4907707
Sequence	CGAGgTGATCTGGCTCGGTGGTGGTGGTGGTGGGCGGGACAGCAGCAGTA GTGGTACTGTCGTCGTCTAGGGTTTGTTTAGGGTTTTCTTCCGCAGCAGC AGCAGTAGTAGTAGTAGGGTTGTTGAGGTTGAGTTGCTCTGATGAATCGG TGGCCATTGTGTGAGAGAATCGGAGATtGCGTGAGAATTACGGCGAGAGA GACGAAtAGAGAGAGATGGGCTGGGTTTtGGATTGTTg
Length	238
Type	contig
Organism	American Chestnut

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References

Dababase	Accession
GFF_source	flxAssembly

ESTs in this contig

Type	Feature	Position
EST	ACWP2_128788_3954_3265	0-94
EST	ACHS2n_158481_3643_3007	0-102
EST	ACHS2n_084457_3477_1495	0-142
EST	ACHS2n_109599_3547_1235	0-142
EST	ACHS1n_178495_2834_1776	0-169
EST	ACHS1n_093914_2933_1311	0-238
EST	ACHS2n_145189_3661_2222	0-238
EST	ACHS1n_081257_2287_0827	5-238
EST	ACCanker_057629_2882_0163	119-212
EST	ACCanker_069269_3015_3413	142-238

Blast Hits to Contigs V2 AC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_AC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
AC454_contig21122_v2	2.65891e-37	83.54%
AC454_contig21122_v2
HSP 1 Score: 149.527 bits (320), Expect = 2.65891e-37 Identity = 66/79 (83.54%), Postives = 66/79 (83.54%), Query Frame = 1 Query: 1 RGDLARXXXXXXXXXXXXYCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237 RGDLAR YCRRLGFVGFLPQQQQ***GCGVALMNRWPLCERIGD VRITARETNRERWAGFWIV Sbjct: 10 RGDLARWWWWWAGQQQWYCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDXVRITARETNRERWAGFWIV 246 HSP 2* Score: 118.369 bits (252), Expect = 7.39264e-31 Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = -3 Query: 57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 236 TIQNPAHLSLFVSLAVILT SPILSHNGHRFIRATQPQQP CGRKPTNPRRRQ Sbjct: 11 TIQNPAHLSLFVSLAVILTXSPILSHNGHRFIRATQPQQPYYYYCCCCGRKPTNPRRRQ 190 HSP 3* Score: 29.4763 bits (58), Expect = 7.39264e-31 Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1 Query: 2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79 KQTLDDDS TEPDHL Sbjct: 168 KQTLDDDSTTTAAVPPTTTTTEPDHL 245 HSP 4 Score: 106.914 bits (227), Expect = 1.78901e-24 Identity = 46/56 (82.14%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGERDEREMGWVLDC 236 RVCLGFSS GLLRLSCSDESVAIVENRR RENYGERDE REMGWVLDC Sbjct: 11 RVCLGFSSAAAAVVVVGLLRLSCSDESVAIVENRRXRENYGERDEXREMGWVLDC 178 HSP 5 Score: 73.9225 bits (155), Expect = 1.56539e-14 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1 Query: 134 QQSKTQPISLYSSLSPFSRNLRFSHTMATDSSEQ 238 QQSKTQPISL SSLSPFSR LRFSHTMATDSSEQ Sbjct: 9 QQSKTQPISLXSSLSP*FSRXLRFSHTMATDSSEQ 113

Match Name

E value

Identity

AC454_contig21122_v2

2.65891e-37

83.54%

AC454_contig21122_v2

HSP 1

Score: 149.527 bits (320), Expect = 2.65891e-37
Identity = 66/79 (83.54%), Postives = 66/79 (83.54%), Query Frame = 1

Query:    1 RGDLARXXXXXXXXXXXXYCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237
            RGDLAR            YCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGD VRITARETNRERWAGFWIV
Sbjct:   10 RGDLARWWWWWAGQQQ*WYCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDXVRITARETNRERWAGFWIV 246

HSP 2

Score: 118.369 bits (252), Expect = 7.39264e-31
Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = -3

Query:   57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP*TNPRRRQ 236
            TIQNPAHLSLFVSLAVILT SPILSHNGHRFIRATQPQQP       CGRKP*TNPRRRQ
Sbjct:   11 TIQNPAHLSLFVSLAVILTXSPILSHNGHRFIRATQPQQPYYYYCCCCGRKP*TNPRRRQ 190

HSP 3

Score: 29.4763 bits (58), Expect = 7.39264e-31
Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1

Query:    2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79
            KQTLDDDS            TEPDHL
Sbjct:  168 KQTLDDDSTTTAAVPPTTTTTEPDHL 245

HSP 4

Score: 106.914 bits (227), Expect = 1.78901e-24
Identity = 46/56 (82.14%), Postives = 46/56 (82.14%), Query Frame = 3

Query:   69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIV*ENRRLRENYGERDE*REMGWVLDC 236
            RVCLGFSS        GLLRLSCSDESVAIV*ENRR RENYGERDE REMGWVLDC
Sbjct:   11 RVCLGFSSAAAAVVVVGLLRLSCSDESVAIV*ENRRXRENYGERDEXREMGWVLDC 178

HSP 5

Score: 73.9225 bits (155), Expect = 1.56539e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1

Query:  134 QQSKTQPISLYSSLSP*FSRNLRFSHTMATDSSEQ 238
            QQSKTQPISL SSLSP*FSR LRFSHTMATDSSEQ
Sbjct:    9 QQSKTQPISLXSSLSP*FSRXLRFSHTMATDSSEQ 113

Blast Hits to Contigs V2 CC454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CC454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
CC454_contig17348_v2	4.95497e-33	93.44%
CC454_contig17348_v2
HSP 1 Score: 136.239 bits (291), Expect = 4.95497e-33 Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 55 YCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237 YCRRLGFVGFLPQQQ **GCGVALMNRWPLCERIGDCVRITARETNRER AGFW+V Sbjct: 2100 YCRRLGFVGFLPQQQXX**GCGVALMNRWPLCERIGDCVRITARETNRERXAGFWVV 2282 HSP 2* Score: 118.827 bits (253), Expect = 9.63907e-31 Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = -3 Query: 57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 236 T QNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQP XX CGRKPTNPRRRQ Sbjct: 2102 TTQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKPTNPRRRQ 2281 HSP 3* Score: 29.4763 bits (58), Expect = 9.63907e-31 Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1 Query: 2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79 KQTLDDDS TEPDHL Sbjct: 2047 KQTLDDDSTTTAAVPPTTTTTEPDHL 2124 HSP 4 Score: 105.081 bits (223), Expect = 1.18738e-23 Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3 Query: 69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGERDEREMGWVLDC 236 RVCLGFSS XX GLLRLSCSDESVAIVENRRLRENYGERDEREM WVL C Sbjct: 2114 RVCLGFSSAAAXXVVVGLLRLSCSDESVAIVENRRLRENYGERDEREMXWVLGC 2281 HSP 5 Score: 74.8389 bits (157), Expect = 1.49633e-14 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1 Query: 134 QQSKTQPISLYSSLSPFSRNLRFSHTMATDSSEQ 238 QQ KTQ ISLYSSLSPFSRNLRFSHTMATDSSEQ Sbjct: 2179 QQPKTQXISLYSSLSP*FSRNLRFSHTMATDSSEQ 2283

Match Name

E value

Identity

CC454_contig17348_v2

4.95497e-33

93.44%

CC454_contig17348_v2

HSP 1

Score: 136.239 bits (291), Expect = 4.95497e-33
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1

Query:   55 YCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237
            YCRRLGFV*GFLPQQQ  ***GC*G*VALMNRWPLCERIGDCVRITARETNRER AGFW+V
Sbjct: 2100 YCRRLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRERXAGFWVV 2282

HSP 2

Score: 118.827 bits (253), Expect = 9.63907e-31
Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = -3

Query:   57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP*TNPRRRQ 236
            T QNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQP   XX  CGRKP*TNPRRRQ
Sbjct: 2102 TTQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKP*TNPRRRQ 2281

HSP 3

Score: 29.4763 bits (58), Expect = 9.63907e-31
Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1

Query:    2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79
            KQTLDDDS            TEPDHL
Sbjct: 2047 KQTLDDDSTTTAAVPPTTTTTEPDHL 2124

HSP 4

Score: 105.081 bits (223), Expect = 1.18738e-23
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3

Query:   69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIV*ENRRLRENYGERDE*REMGWVLDC 236
            RVCLGFSS   XX   GLLRLSCSDESVAIV*ENRRLRENYGERDE*REM WVL C
Sbjct: 2114 RVCLGFSSAAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGERDE*REMXWVLGC 2281

HSP 5

Score: 74.8389 bits (157), Expect = 1.49633e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1

Query:  134 QQSKTQPISLYSSLSP*FSRNLRFSHTMATDSSEQ 238
            QQ KTQ ISLYSSLSP*FSRNLRFSHTMATDSSEQ
Sbjct: 2179 QQPKTQXISLYSSLSP*FSRNLRFSHTMATDSSEQ 2283

Blast Hits to Contigs V2 CCall

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_CCall_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
CCall_contig42794_v2	4.97237e-33	93.44%
CCall_contig42794_v2
HSP 1 Score: 136.239 bits (291), Expect = 4.97237e-33 Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 55 YCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237 YCRRLGFVGFLPQQQ **GCGVALMNRWPLCERIGDCVRITARETNRER AGFW+V Sbjct: 2100 YCRRLGFVGFLPQQQXX**GCGVALMNRWPLCERIGDCVRITARETNRERXAGFWVV 2282 HSP 2* Score: 118.827 bits (253), Expect = 1.00017e-30 Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = -3 Query: 57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 236 T QNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQP XX CGRKPTNPRRRQ Sbjct: 2102 TTQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKPTNPRRRQ 2281 HSP 3* Score: 29.4763 bits (58), Expect = 1.00017e-30 Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1 Query: 2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79 KQTLDDDS TEPDHL Sbjct: 2047 KQTLDDDSTTTAAVPPTTTTTEPDHL 2124 HSP 4 Score: 105.081 bits (223), Expect = 1.19154e-23 Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3 Query: 69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGERDEREMGWVLDC 236 RVCLGFSS XX GLLRLSCSDESVAIVENRRLRENYGERDEREM WVL C Sbjct: 2114 RVCLGFSSAAAXXVVVGLLRLSCSDESVAIVENRRLRENYGERDEREMXWVLGC 2281 HSP 5 Score: 74.8389 bits (157), Expect = 1.55263e-14 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1 Query: 134 QQSKTQPISLYSSLSPFSRNLRFSHTMATDSSEQ 238 QQ KTQ ISLYSSLSPFSRNLRFSHTMATDSSEQ Sbjct: 2179 QQPKTQXISLYSSLSP*FSRNLRFSHTMATDSSEQ 2283

Match Name

E value

Identity

CCall_contig42794_v2

4.97237e-33

93.44%

CCall_contig42794_v2

HSP 1

Score: 136.239 bits (291), Expect = 4.97237e-33
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1

Query:   55 YCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDCVRITARETNRERWAGFWIV 237
            YCRRLGFV*GFLPQQQ  ***GC*G*VALMNRWPLCERIGDCVRITARETNRER AGFW+V
Sbjct: 2100 YCRRLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRERXAGFWVV 2282

HSP 2

Score: 118.827 bits (253), Expect = 1.00017e-30
Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = -3

Query:   57 TIQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP*TNPRRRQ 236
            T QNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQP   XX  CGRKP*TNPRRRQ
Sbjct: 2102 TTQNPAHLSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKP*TNPRRRQ 2281

HSP 3

Score: 29.4763 bits (58), Expect = 1.00017e-30
Identity = 14/26 (53.85%), Postives = 14/26 (53.85%), Query Frame = -1

Query:    2 KQTLDDDSXXXXXXXXXXXXTEPDHL 79
            KQTLDDDS            TEPDHL
Sbjct: 2047 KQTLDDDSTTTAAVPPTTTTTEPDHL 2124

HSP 4

Score: 105.081 bits (223), Expect = 1.19154e-23
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 3

Query:   69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIV*ENRRLRENYGERDE*REMGWVLDC 236
            RVCLGFSS   XX   GLLRLSCSDESVAIV*ENRRLRENYGERDE*REM WVL C
Sbjct: 2114 RVCLGFSSAAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGERDE*REMXWVLGC 2281

HSP 5

Score: 74.8389 bits (157), Expect = 1.55263e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -1

Query:  134 QQSKTQPISLYSSLSP*FSRNLRFSHTMATDSSEQ 238
            QQ KTQ ISLYSSLSP*FSRNLRFSHTMATDSSEQ
Sbjct: 2179 QQPKTQXISLYSSLSP*FSRNLRFSHTMATDSSEQ 2283

Blast Hits to Contig V2 Oall

Analysis Date: 11-04-2009 (Blast: AB454_contigs_v2_vs_ABall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
Oall_contig18167_v2	1.32051e-23	85.19%
Oall_contig18167_v2
HSP 1 Score: 96.8329 bits (205), Expect = 1.32051e-23 Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 1 Query: 55 YCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRER 216 YCRRLGF GFL Q+Q ***GCGVALMNRWPLCERIGD VRITARE ER Sbjct: 61 YCRRLGFFGFLLQKQ****GCGVALMNRWPLCERIGDRVRITARERVER 222 HSP 2 Score: 27.1852 bits (53), Expect = 1.32051e-23 Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 Query: 196 RETNRERWAGFWIV 237 RE ERWA FW+V Sbjct: 24 REXGWERWAEFWVV 65 HSP 3 Score: 88.127 bits (186), Expect = 1.21423e-18 Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = -3 Query: 57 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 215 LS +SLAVILT+SPILSHNGHRFIRATQPQQP C RKP NPRRRQ Sbjct: 62 LSTHLSLAVILTRSPILSHNGHRFIRATQPQQPYYYYYCFCRRKPKNPRRRQ 220 HSP 4* Score: 75.7553 bits (159), Expect = 6.59974e-15 Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGERDERE 215 RV LGFSS GLLRLSCSDESVAIVENRR RENYGER+ RE Sbjct: 62 RVFLGFSSAEAVVVVVGLLRLSCSDESVAIVENRRSRENYGEREMSRE 208
Oall_contig18166_v2	2.63572e-18	82.61%
Oall_contig18166_v2
HSP 1 Score: 83.0867 bits (175), Expect = 2.63572e-18 Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1 Query: 79 GFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRER 216 GFL QQQ ***GCGVALMNRWPLCERIGDC+RIT R+ R R Sbjct: 35 GFLLQQQ****GCGVALMNRWPLCERIGDCLRITPRDIERXR 172 HSP 2* Score: 22.1449 bits (42), Expect = 2.63572e-18 Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 1 Query: 55 YCRRLGF 75 YCRRLGF Sbjct: 175 YCRRLGF 195 HSP 3 Score: 71.1732 bits (149), Expect = 1.54126e-13 Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 78 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP* 215 L L +SL VIL QSPILSHNGHRFIRATQPQQP C RKP* Sbjct: 36 LXLSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKP* 173 HSP 4 Score: 66.5912 bits (139), Expect = 3.78632e-12 Identity = 31/41 (75.61%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 78 LGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGER 200 LGFSS GLLRLSCSDESVAIVENRRL ENY ER Sbjct: 51 LGFSSAAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAER 173
Oall_contig25470_v2	8.16407e-18	78.00%
Oall_contig25470_v2
HSP 1 Score: 85.3777 bits (180), Expect = 8.16407e-18 Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 64 RLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRE 213 R+ GFL QQQ ***GCGVALMNRWPLCERIGDC+RIT R+ RE Sbjct: 1 RVSVFGFLLQQQ****GCGVALMNRWPLCERIGDCLRITPRDIERE 150 HSP 2* Score: 73.0061 bits (153), Expect = 4.32652e-14 Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = -3 Query: 57 SLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 212 SL +SL VIL QSPILSHNGHRFIRATQPQQP C RKP R + Sbjct: 2 SLSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKPKTETRNR 157 HSP 3* Score: 66.5912 bits (139), Expect = 3.69166e-12 Identity = 31/41 (75.61%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 78 LGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGER 200 LGFSS GLLRLSCSDESVAIVENRRL ENY ER Sbjct: 14 LGFSSTAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAER 136

Blast Hits to Contig V2 RO454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_RO454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
RO454_contig12363_v2	1.67394e-18	82.61%
RO454_contig12363_v2
HSP 1 Score: 83.0867 bits (175), Expect = 1.67394e-18 Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1 Query: 79 GFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRER 216 GFL QQQ ***GCGVALMNRWPLCERIGDC+RIT R+ R R Sbjct: 35 GFLLQQQ****GCGVALMNRWPLCERIGDCLRITPRDIERXR 172 HSP 2* Score: 22.1449 bits (42), Expect = 1.67394e-18 Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 1 Query: 55 YCRRLGF 75 YCRRLGF Sbjct: 175 YCRRLGF 195 HSP 3 Score: 71.1732 bits (149), Expect = 9.49476e-14 Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 78 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP* 215 L L +SL VIL QSPILSHNGHRFIRATQPQQP C RKP* Sbjct: 36 LXLSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKP* 173 HSP 4 Score: 66.5912 bits (139), Expect = 2.33106e-12 Identity = 31/41 (75.61%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 78 LGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGER 200 LGFSS GLLRLSCSDESVAIVENRRL ENY ER Sbjct: 51 LGFSSAAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAER 173
RO454_contig17798_v2	5.02938e-18	78.00%
RO454_contig17798_v2
HSP 1 Score: 85.3777 bits (180), Expect = 5.02938e-18 Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 64 RLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRE 213 R+ GFL QQQ ***GCGVALMNRWPLCERIGDC+RIT R+ RE Sbjct: 1 RVSVFGFLLQQQ****GCGVALMNRWPLCERIGDCLRITPRDIERE 150 HSP 2* Score: 73.0061 bits (153), Expect = 2.6653e-14 Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = -3 Query: 57 SLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 212 SL +SL VIL QSPILSHNGHRFIRATQPQQP C RKP R + Sbjct: 2 SLSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKPKTETRNR 157 HSP 3* Score: 66.5912 bits (139), Expect = 2.2742e-12 Identity = 31/41 (75.61%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 78 LGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGER 200 LGFSS GLLRLSCSDESVAIVENRRL ENY ER Sbjct: 14 LGFSSTAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAER 136

Blast Hits to Contigs V2 WO454

Analysis Date: 11-04-2009 (Blast: ACMass_contigs_v1.fasta_vs_WO454_contigs_v2.fasta)
Best 10 Hits Shown
Note: Click a description for more details.

Match Name	E value	Identity
WO454_contig9341_v2	1.3698e-21	85.19%
WO454_contig9341_v2
HSP 1 Score: 96.8329 bits (205), Expect = 1.3698e-21 Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 1 Query: 55 YCRRLGFVGFLPQQQQ**GCGVALMNRWPLCERIGDCVRITARETNRER 216 YCRRLGF GFL Q+Q ***GCGVALMNRWPLCERIGD VRITARE ER Sbjct: 12 YCRRLGFFGFLLQKQ****GCGVALMNRWPLCERIGDRVRITARERVER 173 HSP 2 Score: 88.127 bits (186), Expect = 5.72022e-19 Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = -3 Query: 57 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKPTNPRRRQ 215 LS +SLAVILT+SPILSHNGHRFIRATQPQQP C RKP NPRRRQ Sbjct: 13 LSTHLSLAVILTRSPILSHNGHRFIRATQPQQPYYYYYCFCRRKPKNPRRRQ 171 HSP 3* Score: 75.7553 bits (159), Expect = 3.03141e-15 Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIVENRRLRENYGERDERE 215 RV LGFSS GLLRLSCSDESVAIVENRR RENYGER+ RE Sbjct: 13 RVFLGFSSAEAVVVVVGLLRLSCSDESVAIVENRRSRENYGEREMSRE 159

Match Name

E value

Identity

WO454_contig9341_v2

1.3698e-21

85.19%

WO454_contig9341_v2

HSP 1

Score: 96.8329 bits (205), Expect = 1.3698e-21
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   55 YCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDCVRITARETNRER 216
            YCRRLGF *GFL Q+Q ****GC*G*VALMNRWPLCERIGD VRITARE   ER
Sbjct:   12 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VER 173

HSP 2

Score: 88.127 bits (186), Expect = 5.72022e-19
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = -3

Query:   57 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPXXXXXXXCGRKP*TNPRRRQ 215
            LS  +SLAVILT+SPILSHNGHRFIRATQPQQP       C RKP* NPRRRQ
Sbjct:   13 LSTHLSLAVILTRSPILSHNGHRFIRATQPQQPYYYYYCFCRRKP*KNPRRRQ 171

HSP 3

Score: 75.7553 bits (159), Expect = 3.03141e-15
Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 3

Query:   69 RVCLGFSSXXXXXXXXGLLRLSCSDESVAIV*ENRRLRENYGERDE*RE 215
            RV LGFSS        GLLRLSCSDESVAIV*ENRR RENYGER+  RE
Sbjct:   13 RVFLGFSSAEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRE 159

Fagaceae Genomics Web

ACMass_contig28885_v1

References

ESTs in this contig

Blast Hits to Contigs V2 AC454

Blast Hits to Contigs V2 CC454

Blast Hits to Contigs V2 CCall

Blast Hits to Contig V2 Oall

Blast Hits to Contig V2 RO454

Blast Hits to Contigs V2 WO454

Organisms

Project Information

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