CCall_contig35579_v2

NameCCall_contig35579_v2
AccessionID4103766
Sequence
GATGGCCATGACCATCGTGGAGCAGAGTGGGGGCCAATATCATGTGTTAG
TAATAATTGCAGATGGRCAGGTATTTTGCATCTTGTATGAATGCTATCAT
AATCatATgGYAAGWTMMGGGTAGAATGTTGATGCAACATATTTGGAACA
TTAAGTAGATTTGCTAAGTTCTGAAAGAAATTGAATTAAATTGTCTTCAA
AATTGCAAGTTTTACGTTGAAATCTAGTTAAAATACTTGTACTTGGTGC
Length249
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST CCNHS_061548_3544_0912 0-249
EST CCCanker_258459_3824_1615 30-120

InterProScan Analysis

Analysis Date: 02-17-2010 (Interpro: CCall_contigs_v2)
SEQUENCE: CCall_contig35579_v2_6_ORF2 CRC64: 4FC748417D871007 LENGTH: 62 aa
noIPR
unintegrated
unintegrated
seg [1-12]? NA seg seg seg
SEQUENCE: CCall_contig35579_v2_6_ORF2 CRC64: 4FC748417D871007 LENGTH: 62 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [1-12]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Contigs V2 AC454

Analysis Date: 11-17-2009 (Blast: CCall_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig27985_v24.11524e-1395.83%
AC454_contig27985_v2
HSP 1 
Score: 69.3404 bits (145), Expect = 4.11524e-13
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1
Query:    1 DGHDHRGAEWGPISCVSNNCRWXG 72
            DGHDHRGAEWGPISCVSNNCRW G
Sbjct:   73 DGHDHRGAEWGPISCVSNNCRWTG 144

HSP 2 
Score: 64.3001 bits (134), Expect = 1.35418e-11
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -2
Query:    3 IPXHLQLLLTHDIGPHSAPRWSWP 74
            +P HLQLLLTHDIGPHSAPRWSWP
Sbjct:   75 LPVHLQLLLTHDIGPHSAPRWSWP 146

HSP 3 
Score: 63.3837 bits (132), Expect = 2.5559e-11
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = -3
Query:    2 IQDAKYLXICNYY*HMILAPTLLHDGHGH 88
            I  + YL ICNYY*HMILAPTLLHDGHGH
Sbjct:   74 INTSCYLSICNYY*HMILAPTLLHDGHGH 160

HSP 4 
Score: 62.4673 bits (130), Expect = 4.82407e-11
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = -1
Query:    1 TCPSAIITNT*YWPPLCSTMVMAI 72
            TCPSAIITNT*YWPPLCSTMVMAI
Sbjct:   73 TCPSAIITNT*YWPPLCSTMVMAI 144

Blast Hits to Contigs V2 CC454

Analysis Date: 11-17-2009 (Blast:CCall_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig35966_v21.29732e-51100.00%
CC454_contig35966_v2
HSP 1 
Score: 198.097 bits (426), Expect = 1.29732e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 DGHDHRGAEWGPISCVSNNCRWXGILHLV*MLS*SYGKXRVEC*CNIFGTLSRFAKF*KKLN*IVFKIASFTLKSS*NTCTWC 249
            DGHDHRGAEWGPISCVSNNCRWXGILHLV*MLS*SYGKXRVEC*CNIFGTLSRFAKF*KKLN*IVFKIASFTLKSS*NTCTWC
Sbjct:    1 DGHDHRGAEWGPISCVSNNCRWXGILHLV*MLS*SYGKXRVEC*CNIFGTLSRFAKF*KKLN*IVFKIASFTLKSS*NTCTWC 249

HSP 2 
Score: 188.933 bits (406), Expect = 7.26974e-49
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = -1
Query:    1 APSTSILTRFQRKTCNFEDNLIQFLSELSKST*CSKYVASTFYPXLXI*L**HSYKMQNTCPSAIITNT*YWPPLCSTMVMAI 249
            APSTSILTRFQRKTCNFEDNLIQFLSELSKST*CSKYVASTFYPXLXI*L**HSYKMQNTCPSAIITNT*YWPPLCSTMVMAI
Sbjct:    1 APSTSILTRFQRKTCNFEDNLIQFLSELSKST*CSKYVASTFYPXLXI*L**HSYKMQNTCPSAIITNT*YWPPLCSTMVMAI 249

HSP 3 
Score: 186.184 bits (400), Expect = 4.88794e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = -3
Query:    2 TKYKYFN*IST*NLQF*RQFNSISFRT*QIYLMFQICCINILPXXXHMIMIAFIQDAKYLXICNYY*HMILAPTLLHDGHGH 247
            TKYKYFN*IST*NLQF*RQFNSISFRT*QIYLMFQICCINILPXXXHMIMIAFIQDAKYLXICNYY*HMILAPTLLHDGHGH
Sbjct:    2 TKYKYFN*IST*NLQF*RQFNSISFRT*QIYLMFQICCINILPXXXHMIMIAFIQDAKYLXICNYY*HMILAPTLLHDGHGH 247

HSP 4 
Score: 185.267 bits (398), Expect = 9.44527e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 WP*PSWSRVGANIMC***LQMXRYFASCMNAIIIIWXXXGRMLMQHIWNIK*IC*VLKEIELNCLQNCKFYVEI*LKYLYLV 248
            WP*PSWSRVGANIMC***LQMXRYFASCMNAIIIIWXXXGRMLMQHIWNIK*IC*VLKEIELNCLQNCKFYVEI*LKYLYLV
Sbjct:    3 WP*PSWSRVGANIMC***LQMXRYFASCMNAIIIIWXXXGRMLMQHIWNIK*IC*VLKEIELNCLQNCKFYVEI*LKYLYLV 248

HSP 5 
Score: 178.394 bits (383), Expect = 1.10722e-45
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2
Query:    2 MAMTIVEQSGGQYHVLVIIADGQVFCILYECYHNHMXXXG*NVDATYLEH*VDLLSSERN*IKLSSKLQVLR*NLVKILVLG 247
            MAMTIVEQSGGQYHVLVIIADGQVFCILYECYHNHMXXXG*NVDATYLEH*VDLLSSERN*IKLSSKLQVLR*NLVKILVLG
Sbjct:    2 MAMTIVEQSGGQYHVLVIIADGQVFCILYECYHNHMXXXG*NVDATYLEH*VDLLSSERN*IKLSSKLQVLR*NLVKILVLG 247

HSP 6 
Score: 125.242 bits (267), Expect = 2.3843e-38
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -2
Query:    3 VPNMLHQHSTXXLPYDYDSIHTRCKIPXHLQLLLTHDIGPHSAPRWSWP 149
            VPNMLHQHSTXXLPYDYDSIHTRCKIPXHLQLLLTHDIGPHSAPRWSWP
Sbjct:    3 VPNMLHQHSTXXLPYDYDSIHTRCKIPXHLQLLLTHDIGPHSAPRWSWP 149

HSP 7 
Score: 45.9718 bits (94), Expect = 2.3843e-38
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = -2
Query:  189 HQVQVF*LDFNVKLAILKTI 248
            HQVQVF*LDFNVKLAILKTI
Sbjct:  189 HQVQVF*LDFNVKLAILKTI 248

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