WO454_contig19061_v2

NameWO454_contig19061_v2
AccessionID3406292
Sequence
TAGTTGGTTCATGTGATGTTAAATTCCCCATCAGGCTTGAAGGACTGGCA
TATTCCCATGGTGCCTTTTCTAGTTATGAGCCAGAGCTGTTCCCAGGGTT
GATCTATCGCATGAAACAACCAAAGATTGTGCTGCTTATTTTTGTGTCAG
GAAAAATCGTTCTTACRGGAGCTAAGGTGAGAGATGAGACCTATACAGCC
TTTGAGAACATATACCCGGTGCTTACAGAGTTCAGGAAAAACCAGCAATG
ATTTTGTGGGAAGAGAAGCCAGATCTTGTTTGCAAAAGTTAGGAGGTGGA
ATACCTGGCAATGTAGCTGCTGAGCCTGGATTGAACTGTAAATATAAAAG
CAAATTGTGCATCGGTTCTCTGKTTTTTAAGTTAAAAAAGATGTGTTCAG
TGTCTGCATTTRATTTTCTTGGCTCTGATGTAGTAGTGACTAGTGGGAGA
AGAACCATTATTATTTTTACAGAGTTGTTGACG
Length483
Typecontig
Organism White Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST WOA_060372_0741_0980 0-245
EST WOA_083943_0633_1654 41-297
EST WOA_069109_0531_0930 91-350
EST WOB_147760_1231_0889 123-383
point_mutation WO454_contig19061_v2-snp167 166 168 0
EST WOB_117656_1652_2260 191-422
EST WOA_053348_0324_3305 229-483
point_mutation WO454_contig19061_v2-snp321 320 322 0

GO terms assigned to this feature

Accession Category Term
GO:0006367 biological_process transcription initiation from RNA polymerase II promoter
GO:0005622 cellular_component intracellular
GO:0005488 molecular_function binding
GO:0003677 molecular_function DNA binding
GO:0003702 molecular_function RNA polymerase II transcription factor activity
GO:0008270 molecular_function zinc ion binding

KEGG Analysis

Analysis Date: 11-25-2009 (KEGG: WO454_v2)
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

InterProScan Analysis

Analysis Date: 11-18-2009 (Interpro: WO454_contigs_v2)
SEQUENCE: WO454_contig19061_v2_1_ORF1 CRC64: E8ABA743939BD081 LENGTH: 101 aa
No hits reported.
SEQUENCE: WO454_contig19061_v2_3_ORF1 CRC64: 16F3EC36290245AF LENGTH: 82 aa
InterPro
IPR000814
Family
TATA-box binding
PTHR10126 [1-81]T 5.9e-59 PTHR10126 TATA-BOX BINDING PROTEIN TATA-BOX BINDING PROTEIN
PF00352 [1-78]T 9.3e-32 PF00352 TBP TBP
PS00351 [25-74]T NA PS00351 TFIID TFIID
InterPro
IPR012294
Domain
Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal
SSF55945 [1-79]T 6.1e-27 SSF55945 TATA-box binding protein-like TATA-box binding protein-like
InterPro
IPR012295
Domain
Beta2-adaptin/TATA-box binding, C-terminal
G3DSA:3.30.310.10 [1-82]T 1.1e-24 G3DSA:3.30.310.10 no description no description
SEQUENCE: WO454_contig19061_v2_5_ORF2 CRC64: 95638A399D69B207 LENGTH: 61 aa
InterPro
IPR007087
Domain
Zinc finger, C2H2-type
PS00028 [6-27]? NA PS00028 ZINC_FINGER_C2H2_1 ZINC_FINGER_C2H2_1
SEQUENCE: WO454_contig19061_v2_6_ORF1 CRC64: CBC3122AC105695D LENGTH: 111 aa
No hits reported.
SEQUENCE: WO454_contig19061_v2_1_ORF1 CRC64: E8ABA743939BD081 LENGTH: 101 aa
No hits reported.
SEQUENCE: WO454_contig19061_v2_3_ORF1 CRC64: 16F3EC36290245AF LENGTH: 82 aa
InterPro
IPR000814
Family
TATA-box binding
PANTHERPTHR10126TATA-BOX BINDING PROTEIN
 5.9e-59 [1-81]T       
PFAMPF00352TBP
 9.3e-32 [1-78]T       
PROSITEPS00351TFIID
 NA [25-74]T       
Parent no parent
Children IPR015445
Found in no entries
Contains IPR012294 IPR012295
GO terms Molecular Function: DNA binding (GO:0003677)
Molecular Function: RNA polymerase II transcription factor activity (GO:0003702)
Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367)
InterPro
IPR012294
Domain
Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal
SUPERFAMILYSSF55945TATA-box binding protein-like
 6.1e-27 [1-79]T       
Parent no parent
Children IPR010316 IPR012904
Found in IPR000814 IPR012295 IPR015445
Contains no entries
GO terms Molecular Function: DNA binding (GO:0003677)
InterPro
IPR012295
Domain
Beta2-adaptin/TATA-box binding, C-terminal
GENE3DG3DSA:3.30.310.10no description
 1.1e-24 [1-82]T       
Parent no parent
Children IPR015151
Found in IPR000814 IPR015445
Contains IPR012294
GO terms Molecular Function: binding (GO:0005488)
SEQUENCE: WO454_contig19061_v2_5_ORF2 CRC64: 95638A399D69B207 LENGTH: 61 aa
InterPro
IPR007087
Domain
Zinc finger, C2H2-type
PROSITEPS00028ZINC_FINGER_C2H2_1
 NA [6-27]?       
Parent IPR015880
Children no children
Found in IPR004595 IPR009170 IPR013087 IPR016378 IPR016608 IPR016766 IPR017083 IPR017085 IPR017086 IPR017114 IPR017124 IPR017125 IPR017126
Contains IPR007086
GO terms Cellular Component: intracellular (GO:0005622)
Molecular Function: zinc ion binding (GO:0008270)
SEQUENCE: WO454_contig19061_v2_6_ORF1 CRC64: CBC3122AC105695D LENGTH: 111 aa
No hits reported.

Blast Hits to Uniprot

Analysis Date: 11-18-2009 (Blast: WO454_v2_uniprot)
Best 10 Hits Shown | Show Best 25 Hits | Show All Hits
Note: Click a description for more details.
Match Name E value Identity
Q9ZTX5_PHAVU3.11682e-40100.00%
TATA-box binding protein OS=Phaseolus vulgaris GN=PVTBP1 PE=2 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

Q9SAU1_PHAVU3.11682e-40100.00%
TATA-box binding protein OS=Phaseolus vulgaris GN=PVTBP2 PE=2 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

B7FMY1_MEDTR3.11682e-40100.00%
Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

A7P0B8_VITVI3.11682e-40100.00%
Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024845001 PE=4 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

TBP_TOBAC3.11682e-40100.00%
TATA-box-binding protein OS=Nicotiana tabacum PE=2 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

TBP_SOYBN3.11682e-40100.00%
TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1
HSP 1 
Score: 167.548 bits (423), Expect = 3.11682e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

B7FMV6_MEDTR9.06855e-4098.78%
Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
HSP 1 
Score: 166.007 bits (419), Expect = 9.06855e-40
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHG FSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200

TBP_MESCR9.06855e-4098.78%
TATA-box-binding protein OS=Mesembryanthemum crystallinum PE=2 SV=1
HSP 1 
Score: 166.007 bits (419), Expect = 9.06855e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ 200

TBP_SOLTU1.18439e-3997.56%
TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1
HSP 1 
Score: 165.622 bits (418), Expect = 1.18439e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  119 VGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKNQQ 200

Q2QN41_ORYSJ3.44604e-3998.78%
Os12g0580300 protein OS=Oryza sativa subsp. japonica GN=Os12g0580300 PE=2 SV=1
HSP 1 
Score: 164.081 bits (414), Expect = 3.44604e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK QQ
Sbjct:  127 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQQ 208

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig30197_v22.12717e-9091.46%
AC454_contig30197_v2
HSP 1 
Score: 187.558 bits (403), Expect = 2.12717e-90
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = -2
Query:    9 KSLLVFPELCKHRVYVLKGCIGLISHLSSXKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT* 254
            K +  FPEL KHRVYVLKGCIGLISHLSS KNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQ FKPDGEFNIT*
Sbjct:    1 KIIAGFPELRKHRVYVLKGCIGLISHLSSCKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQPFKPDGEFNIT* 246

HSP 2 
Score: 160.982 bits (345), Expect = 2.12717e-90
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = -3
Query:  239 LLHQSQENXMQTLNTSFLT*KXENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWF 436
            LLHQSQEN MQTLNTSFLT*K ENRCTICFYIYSSIQAQQLHCQVFHL TFANKIWLLFPQNHCWF
Sbjct:  230 LLHQSQENQMQTLNTSFLT*KPENRCTICFYIYSSIQAQQLHCQVFHLRTFANKIWLLFPQNHCWF 427

HSP 3 
Score: 178.852 bits (384), Expect = 3.83857e-86
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1
Query:   10 HVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLXELR*EMRPIQPLRTYTRCLQSSGK 240
            HVMLNSPSGLK WHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFL ELR*EMRPIQPLRTYTRCL+SSGK
Sbjct:    2 HVMLNSPSGLKGWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLQELR*EMRPIQPLRTYTRCLRSSGK 232

HSP 4 
Score: 155.484 bits (333), Expect = 3.83857e-86
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 3
Query:  234 RKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSXF*VKKDVFSVCI*FSWL*CSS 437
            ++NQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFS F*VKKDVFSVCI*FSWL*CSS
Sbjct:  225 QENQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSGF*VKKDVFSVCI*FSWL*CSS 428

HSP 5 
Score: 176.561 bits (379), Expect = 7.22342e-86
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = -3
Query:   11 PQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSH 259
            P      FLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSH
Sbjct:    3 PTKSLLVFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSH 251

HSP 6 
Score: 156.858 bits (336), Expect = 7.22342e-86
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -2
Query:  237 TTTSEPRKXNADTEHIFFNLKXREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVF 437
            TTTSEPRK NADTEHIFFNLK REPMHNLLLYLQFNPGSAATLPGIP PNFCKQDLASLPTKSLLVF
Sbjct:  228 TTTSEPRKSNADTEHIFFNLKTREPMHNLLLYLQFNPGSAATLPGIPSPNFCKQDLASLPTKSLLVF 428

HSP 7 
Score: 170.146 bits (365), Expect = 1.95243e-82
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 2
Query:   11 M*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYXS*GER*DLYSL*EHIPGAYRVQE 238
            M*C*IPHQA*R GIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSY S*GER*DLYSL*EHIPGAY VQE
Sbjct:    3 M*C*IPHQA*RAGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYRS*GER*DLYSL*EHIPGAYGVQE 230

HSP 8 
Score: 151.818 bits (325), Expect = 1.95243e-82
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 1
Query:  238 KTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLXFKLKKMCSVSAFXFLGSDVVV 438
            KTSNDFVGREARSCLQK G GIPGNVAAEPGLNCKYKSKLCIGSL FKLKKMCSVSAF FLGSDVVV
Sbjct:  229 KTSNDFVGREARSCLQKFGDGIPGNVAAEPGLNCKYKSKLCIGSLVFKLKKMCSVSAFDFLGSDVVV 429

HSP 9 
Score: 167.397 bits (359), Expect = 4.20582e-80
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = -1
Query:   10 FS*TL*APGICSQRLYRSHLSP*LX*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHM 240
            FS*T *APGICSQRLYRSHLSP*L *ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMP LQA*WGI*HHM
Sbjct:    2 FS*TP*APGICSQRLYRSHLSP*LL*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPALQA*WGI*HHM 232

HSP 10 
Score: 146.778 bits (314), Expect = 4.20582e-80
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = -1
Query:  238 HYYIRAKKIKCRH*THLF*LKXQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGF 438
            HYYIRAKKIKCRH*THLF*LK QRTDAQFAFIFTVQSRLSSYIARYS S LLQTRSGFSSHKIIAGF
Sbjct:  229 HYYIRAKKIKCRH*THLF*LKNQRTDAQFAFIFTVQSRLSSYIARYSISELLQTRSGFSSHKIIAGF 429

HSP 11 
Score: 190.307 bits (409), Expect = 4.09429e-49
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 3
Query:    9 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAK 287
            SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK    F G+ ++    K
Sbjct:    1 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKTSNDFVGREARSCLQK 279

HSP 12 
Score: 140.821 bits (301), Expect = 3.22928e-34
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 2
Query:  227 RVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLXFLS*KRCVQCLHLIFLALM** 436
            R   KPAMILWEEKPDLVCKS E+EYLAM*LLSLD*TVNIKANCASVL FLS*KRCVQCLHLIFLALM**
Sbjct:  218 RSSGKPAMILWEEKPDLVCKSSEMEYLAM*LLSLD*TVNIKANCASVLWFLS*KRCVQCLHLIFLALM** 427

AC454_contig25402_v25.78588e-12100.00%
AC454_contig25402_v2
HSP 1 
Score: 62.4673 bits (130), Expect = 5.78588e-12
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = -3
Query:    2 LEKAPWEYASPSSLMGNLTSHEPT 73
            LEKAPWEYASPSSLMGNLTSHEPT
Sbjct:   83 LEKAPWEYASPSSLMGNLTSHEPT 154

HSP 2 
Score: 23.0613 bits (44), Expect = 5.78588e-12
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -1
Query:  172 LYRSHLSP* 198
            LYRSHLSP*
Sbjct:    2 LYRSHLSP* 28

HSP 3 
Score: 60.6344 bits (126), Expect = 1.45318e-11
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSS 74
            VGSCDVKFPIRLEGLAYSHGAFSS
Sbjct:   82 VGSCDVKFPIRLEGLAYSHGAFSS 153

HSP 4 
Score: 23.5196 bits (45), Expect = 1.45318e-11
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  164 YXS*GER*DLYS 199
            + S*GER*DLYS
Sbjct:    1 FES*GER*DLYS 36

HSP 5 
Score: 60.1762 bits (125), Expect = 2.69884e-11
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 2
Query:    2 SWFM*C*IPHQA*RTGIFPWCLF* 73
            SWFM*C*IPHQA*R GIFPWCLF*
Sbjct:   83 SWFM*C*IPHQA*RAGIFPWCLF* 154

HSP 6 
Score: 23.0613 bits (44), Expect = 2.69884e-11
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  162 LTGAKVRDETYT 197
            ++  KVRDETYT
Sbjct:    3 ISNLKVRDETYT 38

HSP 7 
Score: 59.718 bits (124), Expect = 5.05195e-11
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = -1
Query:    1 N*KRHHGNMPVLQA*WGI*HHMNQL 75
            +*KRHHGNMP LQA*WGI*HHMNQL
Sbjct:   81 H*KRHHGNMPALQA*WGI*HHMNQL 155

HSP 8 
Score: 22.6031 bits (43), Expect = 5.05195e-11
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -2
Query:  174 CIGLISHL 197
            CIGLISHL
Sbjct:    3 CIGLISHL 26

AC454_contig27986_v23.47165e-11100.00%
AC454_contig27986_v2
HSP 1 
Score: 64.3001 bits (134), Expect = 3.47165e-11
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -3
Query:  173 HCWFFLNSVSTGYMFSKAV*VSSLTL 250
            HCWFFLNSVSTGYMFSKAV*VSSLTL
Sbjct:  319 HCWFFLNSVSTGYMFSKAV*VSSLTL 396

HSP 2 
Score: 63.8419 bits (133), Expect = 4.76947e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:   99 LIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
             ++   Q    +L+       ++  KVRDETYTAFENIYPVLTEFRKNQQ
Sbjct:  321 FLFLPSQVLYAILVGSDQHCFISNLKVRDETYTAFENIYPVLTEFRKNQQ 470

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig1167_v22.35283e-9196.90%
CC454_contig1167_v2
HSP 1 
Score: 301.652 bits (652), Expect = 2.35283e-91
Identity = 125/129 (96.90%), Postives = 125/129 (96.90%), Query Frame = -3
Query:    2 FLT*KXENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 388
            F  *K ENRCTICFYIYSSIQAQQLHCQVFHL TFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT
Sbjct:  637 F*L*KPENRCTICFYIYSSIQAQQLHCQVFHLRTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 1023

HSP 2 
Score: 51.0121 bits (105), Expect = 2.35283e-91
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = -1
Query:  379 SHYYIRAKKIKCRH*THLF*L 441
            SHYYIRAK+IKCRH*THLF*L
Sbjct: 1015 SHYYIRAKEIKCRH*THLF*L 1077

HSP 3 
Score: 298.445 bits (645), Expect = 8.74293e-88
Identity = 121/129 (93.80%), Postives = 121/129 (93.80%), Query Frame = -2
Query:    3 FFNLKXREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSXKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 389
            F  LK REPMHNLLLYLQFNPGSAATLPGIP PNFCKQDLASLPTKSLLVFPEL KH VYVLKGCIGLISHLSS KNDFS*HKNKQHNLWL HAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN
Sbjct:  638 FLTLKTREPMHNLLLYLQFNPGSAATLPGIPSPNFCKQDLASLPTKSLLVFPELRKHXVYVLKGCIGLISHLSSCKNDFS*HKNKQHNLWLXHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 1024

HSP 4 
Score: 42.3061 bits (86), Expect = 8.74293e-88
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = -2
Query:  375 TTTSEPRKXNADTEHIFFNLK 437
            TTTSEPRK NAD E IFFN K
Sbjct: 1011 TTTSEPRKSNADXEXIFFNFK 1073

HSP 5 
Score: 297.528 bits (643), Expect = 5.82681e-87
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSXF* 380
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFS F*
Sbjct:  638 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSGF* 1015

HSP 6 
Score: 40.4733 bits (82), Expect = 5.82681e-87
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  375 F*VKKDVFSVCI*FSWL*CSS 437
            F VKKD F VCI*F WL*CSS
Sbjct: 1011 FKVKKDXFXVCI*FPWL*CSS 1073

HSP 7 
Score: 292.03 bits (631), Expect = 1.25681e-84
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 1
Query:    1 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLXELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLXFKLKK 390
            *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA* NQRLCCLFLCQEKSFL ELR*EMRPIQPLRTYT CL+SSGKTSNDFVGREARSCLQK G GIPGNVAAEPGLNCKYKSKLCIGSL FK+KK
Sbjct:  636 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*XNQRLCCLFLCQEKSFLQELR*EMRPIQPLRTYTXCLRSSGKTSNDFVGREARSCLQKFGDGIPGNVAAEPGLNCKYKSKLCIGSLVFKVKK 1025

HSP 8 
Score: 38.1822 bits (77), Expect = 1.25681e-84
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  379 KLKKMCSVSAFXFLGSDVVV 438
            KLKKM S SAF FLGSDVVV
Sbjct: 1015 KLKKMXSXSAFDFLGSDVVV 1074

HSP 9 
Score: 275.076 bits (594), Expect = 1.00272e-78
Identity = 120/130 (92.31%), Postives = 122/130 (93.85%), Query Frame = 2
Query:    2 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYXS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLXFLS*KR 391
            SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHE TKDCAAYFCVRKNRSY S*GER*DLYSL*EHIP AY VQEKPAMILWEEKPDLVCKS E+EYLAM*LLSLD*TVNIKANCASVL FL  K+
Sbjct:  637 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHEXTKDCAAYFCVRKNRSYRS*GER*DLYSL*EHIPXAYGVQEKPAMILWEEKPDLVCKSSEMEYLAM*LLSLD*TVNIKANCASVLWFLKLKK 1026

HSP 10 
Score: 35.433 bits (71), Expect = 1.00272e-78
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  374 FLS*KRCVQCLHLIFLALM** 436
            F S*KR VQCLHLI LALM**
Sbjct: 1010 F*S*KRXVQCLHLISLALM** 1072

HSP 11 
Score: 264.079 bits (570), Expect = 2.95896e-76
Identity = 120/129 (93.02%), Postives = 120/129 (93.02%), Query Frame = -1
Query:    1 F*LKXQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LX*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 387
            F  K QRTDAQFAFIFTVQSRLSSYIARYS S LLQTRSGFSSHKIIAGFS*T *A GICSQRLYRSHLSP*L *ERFFLTQK*AAQSLV SCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL
Sbjct:  636 FNFKNQRTDAQFAFIFTVQSRLSSYIARYSISELLQTRSGFSSHKIIAGFS*TP*AXGICSQRLYRSHLSP*LL*ERFFLTQK*AAQSLVXSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 1022

HSP 12 
Score: 38.1822 bits (77), Expect = 2.95896e-76
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  374 LLHQSQENXMQTLNTSFLT*K 436
            LLHQSQ N MQTLN SFLT K
Sbjct: 1010 LLHQSQGNQMQTLNXSFLTLK 1072

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig1245_v22.44283e-9196.90%
CCall_contig1245_v2
HSP 1 
Score: 301.652 bits (652), Expect = 2.44283e-91
Identity = 125/129 (96.90%), Postives = 125/129 (96.90%), Query Frame = -3
Query:    2 FLT*KXENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 388
            F  *K ENRCTICFYIYSSIQAQQLHCQVFHL TFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT
Sbjct:  637 F*L*KPENRCTICFYIYSSIQAQQLHCQVFHLRTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 1023

HSP 2 
Score: 51.0121 bits (105), Expect = 2.44283e-91
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = -1
Query:  379 SHYYIRAKKIKCRH*THLF*L 441
            SHYYIRAK+IKCRH*THLF*L
Sbjct: 1015 SHYYIRAKEIKCRH*THLF*L 1077

HSP 3 
Score: 298.445 bits (645), Expect = 9.07734e-88
Identity = 121/129 (93.80%), Postives = 121/129 (93.80%), Query Frame = -2
Query:    3 FFNLKXREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSXKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 389
            F  LK REPMHNLLLYLQFNPGSAATLPGIP PNFCKQDLASLPTKSLLVFPEL KH VYVLKGCIGLISHLSS KNDFS*HKNKQHNLWL HAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN
Sbjct:  638 FLTLKTREPMHNLLLYLQFNPGSAATLPGIPSPNFCKQDLASLPTKSLLVFPELRKHXVYVLKGCIGLISHLSSCKNDFS*HKNKQHNLWLXHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 1024

HSP 4 
Score: 42.3061 bits (86), Expect = 9.07734e-88
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = -2
Query:  375 TTTSEPRKXNADTEHIFFNLK 437
            TTTSEPRK NAD E IFFN K
Sbjct: 1011 TTTSEPRKSNADXEXIFFNFK 1073

HSP 5 
Score: 297.528 bits (643), Expect = 6.04968e-87
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSXF* 380
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFS F*
Sbjct:  638 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSGF* 1015

HSP 6 
Score: 40.4733 bits (82), Expect = 6.04968e-87
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  375 F*VKKDVFSVCI*FSWL*CSS 437
            F VKKD F VCI*F WL*CSS
Sbjct: 1011 FKVKKDXFXVCI*FPWL*CSS 1073

HSP 7 
Score: 292.03 bits (631), Expect = 1.30488e-84
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 1
Query:    1 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLXELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLXFKLKK 390
            *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA* NQRLCCLFLCQEKSFL ELR*EMRPIQPLRTYT CL+SSGKTSNDFVGREARSCLQK G GIPGNVAAEPGLNCKYKSKLCIGSL FK+KK
Sbjct:  636 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*XNQRLCCLFLCQEKSFLQELR*EMRPIQPLRTYTXCLRSSGKTSNDFVGREARSCLQKFGDGIPGNVAAEPGLNCKYKSKLCIGSLVFKVKK 1025

HSP 8 
Score: 38.1822 bits (77), Expect = 1.30488e-84
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  379 KLKKMCSVSAFXFLGSDVVV 438
            KLKKM S SAF FLGSDVVV
Sbjct: 1015 KLKKMXSXSAFDFLGSDVVV 1074

HSP 9 
Score: 275.076 bits (594), Expect = 1.04108e-78
Identity = 120/130 (92.31%), Postives = 122/130 (93.85%), Query Frame = 2
Query:    2 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYXS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLXFLS*KR 391
            SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHE TKDCAAYFCVRKNRSY S*GER*DLYSL*EHIP AY VQEKPAMILWEEKPDLVCKS E+EYLAM*LLSLD*TVNIKANCASVL FL  K+
Sbjct:  637 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHEXTKDCAAYFCVRKNRSYRS*GER*DLYSL*EHIPXAYGVQEKPAMILWEEKPDLVCKSSEMEYLAM*LLSLD*TVNIKANCASVLWFLKLKK 1026

HSP 10 
Score: 35.433 bits (71), Expect = 1.04108e-78
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  374 FLS*KRCVQCLHLIFLALM** 436
            F S*KR VQCLHLI LALM**
Sbjct: 1010 F*S*KRXVQCLHLISLALM** 1072

HSP 11 
Score: 264.079 bits (570), Expect = 3.07214e-76
Identity = 120/129 (93.02%), Postives = 120/129 (93.02%), Query Frame = -1
Query:    1 F*LKXQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LX*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 387
            F  K QRTDAQFAFIFTVQSRLSSYIARYS S LLQTRSGFSSHKIIAGFS*T *A GICSQRLYRSHLSP*L *ERFFLTQK*AAQSLV SCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL
Sbjct:  636 FNFKNQRTDAQFAFIFTVQSRLSSYIARYSISELLQTRSGFSSHKIIAGFS*TP*AXGICSQRLYRSHLSP*LL*ERFFLTQK*AAQSLVXSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 1022

HSP 12 
Score: 38.1822 bits (77), Expect = 3.07214e-76
Identity = 17/21 (80.95%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  374 LLHQSQENXMQTLNTSFLT*K 436
            LLHQSQ N MQTLN SFLT K
Sbjct: 1010 LLHQSQGNQMQTLNXSFLTLK 1072

Blast Hits to C. Parasitica Protein

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CparasiticaFilteredProteinModelsAAseqs)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
estExt_Genewise1Plus.C_910161.55861e-3284.81%
Crypa1|95100|estExt_Genewise1Plus.C_91016
HSP 1 
Score: 134.035 bits (336), Expect = 1.55861e-32
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 239
            VGSCD+KFPIRLEGLA  H  FSSYEPELFPGLIYRM +PKIVLLIFVSGKIVLTGAKVRDE Y AFE IYPVL +FRK
Sbjct:  177 VGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYHAFELIYPVLQDFRK 255

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig1191_v26.22901e-9796.55%
Oall_contig1191_v2
HSP 1 
Score: 349.764 bits (757), Expect = 6.22901e-97
Identity = 140/145 (96.55%), Postives = 140/145 (96.55%), Query Frame = -2
Query:    3 TTTSEPRKXNADTEHIFFNLKXREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSXKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 437
            TTTSEPRK NADTEHIFFN K REPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSS KNDFS*H NKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN
Sbjct:  655 TTTSEPRKLNADTEHIFFNXKTREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSCKNDFS*HXNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 1089

HSP 2 
Score: 341.058 bits (738), Expect = 2.60121e-94
Identity = 142/145 (97.93%), Postives = 142/145 (97.93%), Query Frame = -3
Query:    2 LLHQSQENXMQTLNTSFLT*KXENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 436
            LLHQSQEN MQTLNTSFLT K ENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT
Sbjct:  654 LLHQSQEN*MQTLNTSFLTXKPENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 1088

HSP 3 
Score: 338.767 bits (733), Expect = 1.28384e-93
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSXF*VKKDVFSVCI*FSWL*CSS 437
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFS F VKKDVFSVCI*FSWL*CSS
Sbjct:  655 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSGFXVKKDVFSVCI*FSWL*CSS 1089

HSP 4 
Score: 334.185 bits (723), Expect = 3.07509e-92
Identity = 141/146 (96.58%), Postives = 141/146 (96.58%), Query Frame = 1
Query:    1 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLXELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLXFKLKKMCSVSAFXFLGSDVVV 438
            *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLF CQEKSFL ELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSL  KLKKMCSVSAF FLGSDVVV
Sbjct:  653 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFXCQEKSFLQELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLVXKLKKMCSVSAFNFLGSDVVV 1090

HSP 5 
Score: 321.813 bits (696), Expect = 1.61594e-88
Identity = 143/147 (97.28%), Postives = 143/147 (97.28%), Query Frame = -1
Query:    1 SHYYIRAKKIKCRH*THLF*LKXQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LX*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 441
            SHYYIRAKKIKCRH*THLF*L  QRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*L *ERFFLT K*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL
Sbjct:  653 SHYYIRAKKIKCRH*THLF*LXNQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LL*ERFFLTXK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 1093

HSP 6 
Score: 319.522 bits (691), Expect = 7.97558e-88
Identity = 141/145 (97.24%), Postives = 141/145 (97.24%), Query Frame = 2
Query:    2 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYXS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLXFLS*KRCVQCLHLIFLALM** 436
            SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYF VRKNRSY S*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVL F S*KRCVQCLHLIFLALM**
Sbjct:  654 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFXVRKNRSYRS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLWFXS*KRCVQCLHLIFLALM** 1088

Oall_contig32142_v27.33764e-11100.00%
Oall_contig32142_v2
HSP 1 
Score: 63.8419 bits (133), Expect = 7.33764e-11
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -2
Query:   75 NKQHNLWLFHAIDQPWEQLWLI 140
            NKQHNLWLFHAIDQPWEQLWLI
Sbjct:  223 NKQHNLWLFHAIDQPWEQLWLI 288

Blast Hits to Populus Trichocarpa Proteins

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
estExt_fgenesh4_pg.C_LG_XIX03939.59903e-4196.34%
jgi|Poptr1_1|826131|estExt_fgenesh4_pg.C_LG_XIX0393
HSP 1 
Score: 162.54 bits (410), Expect = 9.59903e-41
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPE+FPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK QQ
Sbjct:  120 VGSCDVKFPIRLEGLAYSHGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 201

estExt_Genewise1_v1.C_LG_XIII20481.63735e-4096.34%
jgi|Poptr1_1|730014|estExt_Genewise1_v1.C_LG_XIII2048
HSP 1 
Score: 161.77 bits (408), Expect = 1.63735e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRK QQ
Sbjct:  120 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREETYTAFENIYPVLTEFRKVQQ 201

eugene3.001903832.99782e-2686.15%
jgi|Poptr1_1|573909|eugene3.00190383
HSP 1 
Score: 114.39 bits (285), Expect = 2.99782e-26
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 3
Query:   54 SHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            S      YEPE+FPGLIYRMKQPKIVLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRK QQ
Sbjct:    5 SRARLVQYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 69

Blast Hits to Contig V2 RO454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig14292_v29.16196e-9695.17%
RO454_contig14292_v2
HSP 1 
Score: 345.182 bits (747), Expect = 9.16196e-96
Identity = 138/145 (95.17%), Postives = 139/145 (95.86%), Query Frame = -2
Query:    3 TTTSEPRKXNADTEHIFFNLKXREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSXKNDFS*HKNKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 437
            TTTSEPRK NADTEHIFFN K REPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSS   DFS*H+NKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN
Sbjct:  433 TTTSEPRKLNADTEHIFFNFKTREPMHNLLLYLQFNPGSAATLPGIPPPNFCKQDLASLPTKSLLVFPELCKHRVYVLKGCIGLISHLSSCXXDFS*HENKQHNLWLFHAIDQPWEQLWLITRKGTMGICQSFKPDGEFNIT*TN 867

HSP 2 
Score: 338.309 bits (732), Expect = 1.074e-93
Identity = 141/145 (97.24%), Postives = 141/145 (97.24%), Query Frame = -3
Query:    2 LLHQSQENXMQTLNTSFLT*KXENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRTIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 436
            LLHQSQEN MQTLNTSFLT K ENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVR IFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT
Sbjct:  432 LLHQSQEN*MQTLNTSFLTSKPENRCTICFYIYSSIQAQQLHCQVFHLLTFANKIWLLFPQNHCWFFLNSVSTGYMFSKAV*VSSLTLAPVRXIFPDTKISSTIFGCFMR*INPGNSSGS*LEKAPWEYASPSSLMGNLTSHEPT 866

HSP 3 
Score: 336.476 bits (728), Expect = 3.85788e-93
Identity = 142/145 (97.93%), Postives = 142/145 (97.93%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSXF*VKKDVFSVCI*FSWL*CSS 437
            VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI LTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFS F VKKDVFSVCI*FSWL*CSS
Sbjct:  433 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIXLTGAKVRDETYTAFENIYPVLTEFRKNQQ*FCGKRSQILFAKVRRWNTWQCSC*AWIEL*I*KQIVHRFSGFEVKKDVFSVCI*FSWL*CSS 867

HSP 4 
Score: 331.894 bits (718), Expect = 9.24046e-92
Identity = 140/146 (95.89%), Postives = 140/146 (95.89%), Query Frame = 1
Query:    1 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFLCQEKSFLXELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLXFKLKKMCSVSAFXFLGSDVVV 438
            *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLF CQEKSF  ELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSL  KLKKMCSVSAF FLGSDVVV
Sbjct:  431 *LVHVMLNSPSGLKDWHIPMVPFLVMSQSCSQG*SIA*NNQRLCCLFSCQEKSFXQELR*EMRPIQPLRTYTRCLQSSGKTSNDFVGREARSCLQKLGGGIPGNVAAEPGLNCKYKSKLCIGSLVLKLKKMCSVSAFNFLGSDVVV 868

HSP 5 
Score: 323.646 bits (700), Expect = 2.78555e-89
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = -1
Query:    1 SHYYIRAKKIKCRH*THLF*LKXQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LX*ERFFLTQK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 441
            SHYYIRAKKIKCRH*THLF*L+ QRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*L *ERFFLT+K*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL
Sbjct:  431 SHYYIRAKKIKCRH*THLF*LQNQRTDAQFAFIFTVQSRLSSYIARYSTS*LLQTRSGFSSHKIIAGFS*TL*APGICSQRLYRSHLSP*LL*ERFFLTRK*AAQSLVVSCDRSTLGTALAHN*KRHHGNMPVLQA*WGI*HHMNQL 871

HSP 6 
Score: 310.816 bits (672), Expect = 2.04494e-85
Identity = 139/145 (95.86%), Postives = 139/145 (95.86%), Query Frame = 2
Query:    2 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFCVRKNRSYXS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLXFLS*KRCVQCLHLIFLALM** 436
            SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYF VRKN S  S*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVL F S*KRCVQCLHLIFLALM**
Sbjct:  432 SWFM*C*IPHQA*RTGIFPWCLF*L*ARAVPRVDLSHETTKDCAAYFRVRKNXSXRS*GER*DLYSL*EHIPGAYRVQEKPAMILWEEKPDLVCKS*EVEYLAM*LLSLD*TVNIKANCASVLWF*S*KRCVQCLHLIFLALM** 866

RO454_contig22886_v24.50589e-11100.00%
RO454_contig22886_v2
HSP 1 
Score: 63.8419 bits (133), Expect = 4.50589e-11
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -2
Query:   75 NKQHNLWLFHAIDQPWEQLWLI 140
            NKQHNLWLFHAIDQPWEQLWLI
Sbjct:  223 NKQHNLWLFHAIDQPWEQLWLI 288

Blast Hits to TAIR7 Peptides

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_TAIR7_pep_20070425)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AT3G13445.1 5.44796e-3891.46%
TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding / RNA polymerase II transcription factor | chr3:4380324-4381876 FORWARD
HSP 1 
Score: 153.295 bits (386), Expect = 5.44796e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+RDETY AFENIYPVL+EFRK QQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ 200

AT1G55520.2 5.44796e-3891.46%
TBP2 (TATA binding protein 2); DNA binding / RNA polymerase II transcription factor | chr1:20729816-20731149 REVERSE
HSP 1 
Score: 153.295 bits (386), Expect = 5.44796e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+ETYTAFENIYPVL EFRK QQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQQ 200

AT1G55520.1 5.44796e-3891.46%
TBP2 (TATA binding protein 2); DNA binding / RNA polymerase II transcription factor | chr1:20729816-20731149 REVERSE
HSP 1 
Score: 153.295 bits (386), Expect = 5.44796e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 248
            VGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+ETYTAFENIYPVL EFRK QQ
Sbjct:  119 VGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRKVQQ 200

AT3G13445.2 2.14732e-2694.92%
TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding / RNA polymerase II transcription factor | chr3:4380324-4381658 FORWARD
HSP 1 
Score: 114.775 bits (286), Expect = 2.14732e-26
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 VGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV 179
            VGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAKV
Sbjct:  119 VGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKV 177

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