WO454_contig9341_v2

NameWO454_contig9341_v2
AccessionID3353444
Sequence
CCCAGCCYATCTCTCTCTACTCATCTCTCTCTCGCCGTAATTCTCACGCG
ATCTCCGATTCTCTCACACAATGGCCACCGATTCATCAGAGCAACTCAAC
CTCAACAACCCTACTACTACTACTACTGCTTCTGCAGAAGAAAACCCTAA
AAAAACCCTAGACGACGACAGTACCACTACTACTGCTGTCCCTCCCaCCA
CCACCACCGARCCAGATCACCTCGAAGAAGAAGAAGAAGARGAGGAAGAG
CCAGCCGATGAGGCTTCCGATCAGCCTTCTGTAACCACCGTCGATTCCGA
TGCGAAGTCCGGCGACGATTCGAAGAGCGCCGTAGCCGCCRCCTCCGCCG
CCGCGGCTGCCTCGCCTGTAGCAGGGGATGTTGTTGATGTGGATCCGGCT
TCCAATATTCAGAAGAAGATCCGTCGTGCCGAGCGATTCGGAATTTCCTT
GCAACTCACCGAGGAGGAGAAGCGTAATTCACGAAAGGAGAGGTTTG
Length497
Typecontig
Organism White Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST WOB_013678_2996_1492 0-202
EST WOB_078182_1538_2356 0-211
EST WOB_063860_2488_3102 0-248
microsatellite WO454_contig9341_v2-ssr24 23 33 0
microsatellite WO454_contig9341_v2-ssr111 110 125 0
EST WOA_050269_1485_2742 112-379
EST WOB_052568_1837_3269 165-399
microsatellite WO454_contig9341_v2-ssr195 194 206 0
EST WOA_006849_1788_0248 220-456
microsatellite WO454_contig9341_v2-ssr224 223 238 0
EST WOB_012135_1442_2205 225-478
EST WOA_133138_1898_3160 239-497

GO terms assigned to this feature

Accession Category Term
GO:0015986 biological_process ATP synthesis coupled proton transport

InterProScan Analysis

Analysis Date: 11-18-2009 (Interpro: WO454_contigs_v2)
SEQUENCE: WO454_contig9341_v2_1_ORF1 CRC64: 6B519A75C1CFC208 LENGTH: 49 aa
noIPR
unintegrated
unintegrated
seg [33-42]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_2_ORF2 CRC64: 0F8EF3179D58DD9D LENGTH: 152 aa
noIPR
unintegrated
unintegrated
seg [25-29]? NA seg seg[39-75]? NA seg seg[84-121]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_3_ORF1 CRC64: 77697FC693CC11E4 LENGTH: 52 aa
InterPro
IPR020003
Active_site
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site
PS00152 [25-34]? NA PS00152 ATPASE_ALPHA_BETA ATPASE_ALPHA_BETA
noIPR
unintegrated
unintegrated
seg [32-51]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_4_ORF2 CRC64: B8759051124048ED LENGTH: 50 aa
noIPR
unintegrated
unintegrated
seg [1-27]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_5_ORF2 CRC64: 8527B4D5F632EFCF LENGTH: 106 aa
noIPR
unintegrated
unintegrated
seg [37-50]? NA seg seg[69-102]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_6_ORF2 CRC64: 727C0E4972439A63 LENGTH: 91 aa
noIPR
unintegrated
unintegrated
seg [22-56]? NA seg seg[67-87]? NA seg seg seg
SEQUENCE: WO454_contig9341_v2_1_ORF1 CRC64: 6B519A75C1CFC208 LENGTH: 49 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [33-42]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: WO454_contig9341_v2_2_ORF2 CRC64: 0F8EF3179D58DD9D LENGTH: 152 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [25-29]?   NA [39-75]?   NA [84-121]?   
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: WO454_contig9341_v2_3_ORF1 CRC64: 77697FC693CC11E4 LENGTH: 52 aa
InterPro
IPR020003
Active_site
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site
PROSITEPS00152ATPASE_ALPHA_BETA
 NA [25-34]?       
Parent no parent
Children no children
Found in IPR000194 IPR005294 IPR005714 IPR005722 IPR005723 IPR005724 IPR005725 IPR005726 IPR013380 IPR017458 IPR017691 IPR017710 IPR020005
Contains no entries
GO terms Biological Process: ATP synthesis coupled proton transport (GO:0015986)
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [32-51]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: WO454_contig9341_v2_4_ORF2 CRC64: B8759051124048ED LENGTH: 50 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [1-27]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: WO454_contig9341_v2_5_ORF2 CRC64: 8527B4D5F632EFCF LENGTH: 106 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [37-50]?   NA [69-102]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: WO454_contig9341_v2_6_ORF2 CRC64: 727C0E4972439A63 LENGTH: 91 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [22-56]?   NA [67-87]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig21122_v21.93369e-5785.19%
AC454_contig21122_v2
HSP 1 
Score: 97.7493 bits (207), Expect = 1.93369e-57
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = -1
Query:   12 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VER 173
            YCRRLGF *GFL Q+Q ****GC*G*VALMNRWPLCERIGD VRITARE   ER
Sbjct:   31 YCRRLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDXVRITARETNRER 192

HSP 2 
Score: 89.5016 bits (189), Expect = 1.93369e-57
Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = -2
Query:  248 TTDLLLNIGSRIHINNIPCXXXXXXXXXXXXXGALRIVAGLRIGIDGGYRRLIGSLIGWL 427
            T DLLLNIG RI INN+P              GALR VAGLRIGIDGGYRRLIGSLIGWL
Sbjct:  276 TADLLLNIGIRIRINNVPSYRRGRRRGGGGRNGALRFVAGLRIGIDGGYRRLIGSLIGWL 455

HSP 3 
Score: 69.7986 bits (146), Expect = 1.93369e-57
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -3
Query:  403 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 495
            NLSFRELRFSSSVSCKE+PNRSARRIFF*IL
Sbjct:  431 NLSFRELRFSSSVSCKEMPNRSARRIFF*IL 523

HSP 4 
Score: 77.5882 bits (163), Expect = 1.85149e-35
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = -3
Query:   13 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRE 135
            A A VVVVGLLRLSCSDESVAIV*ENRR RENYGER+  RE
Sbjct:   32 AAAAVVVVGLLRLSCSDESVAIV*ENRRXRENYGERDEXRE 154

HSP 5 
Score: 74.8389 bits (157), Expect = 1.85149e-35
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = -1
Query:  393 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 497
            QTS FVNYASPPR*VARK RIARH GSSSEYW PD
Sbjct:  421 QTSLFVNYASPPR*VARKCRIARHGGSSSEYWNPD 525

HSP 6 
Score: 30.3927 bits (60), Expect = 1.85149e-35
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  258 WLQKADRKPH 287
            WLQKADRKPH
Sbjct:  286 WLQKADRKPH 315

HSP 7 
Score: 86.2941 bits (182), Expect = 7.61822e-33
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  375 GMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 497
            G LLM IR+PIFRRRS VPSDS FPCNSPRRRSVIHE+RGL
Sbjct:  403 GTLLMRIRIPIFRRRSAVPSDSAFPCNSPRRRSVIHEKRGL 525

HSP 8 
Score: 71.6314 bits (150), Expect = 7.61822e-33
Identity = 32/59 (54.24%), Postives = 33/59 (55.93%), Query Frame = 1
Query:   13 LSTHLSLAVILTRSPILSHNGHRFIRATXXXXXXXXXXCFCXXXXXXXXXXXQYHYYCC 189
            LS  +SLAVILT SPILSHNGHRFIRAT          C C           QYHY CC
Sbjct:   32 LSLFVSLAVILTXSPILSHNGHRFIRATQPQQPYYYYCCCCGRKP*TNPRRRQYHYCCC 208

HSP 9 
Score: 70.2581 bits (152), Expect = 4.32046e-26
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  404 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 496
            NIQKKIRRAERFGISLQLTEEEKRNSRKERF
Sbjct:  432 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 524

HSP 10 
Score: 64.9518 bits (140), Expect = 4.32046e-26
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 2
Query:   47 RDLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            R LRFSHTMATDSSEQLNLNNP     A+AEENPK+
Sbjct:   66 RXLRFSHTMATDSSEQLNLNNPTTTTAAAAEENPKQ 173

HSP 11 
Score: 68.424 bits (143), Expect = 1.52505e-25
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  403 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 495
            QYSEEDP CRAIR+FLATHRGGEA*FTK EV
Sbjct:  431 QYSEEDPPCRAIRHFLATHRGGEA*FTKREV 523

HSP 12 
Score: 61.5509 bits (128), Expect = 1.52505e-25
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3
Query:   12 SLYSSLSRRNSHAISDSLTQWPPIHQSN 95
            SL   LSRRNSHAISDSLTQWPPIHQSN
Sbjct:   31 SLSXRLSRRNSHAISDSLTQWPPIHQSN 114

HSP 13 
Score: 21.6867 bits (41), Expect = 1.52505e-25
Identity = 5/6 (83.33%), Postives = 6/6 (100.00%), Query Frame = 1
Query:  172 YHYYCC 189
            Y+YYCC
Sbjct:  131 YYYYCC 148

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig17348_v28.71188e-5483.33%
CC454_contig17348_v2
HSP 1 
Score: 94.5419 bits (200), Expect = 8.71188e-54
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = -1
Query:   12 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VER 173
            YCRRLGF *GFL Q+Q  ***GC*G*VALMNRWPLCERIGD VRITARE   ER
Sbjct: 2100 YCRRLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRER 2261

HSP 2 
Score: 69.7986 bits (146), Expect = 8.71188e-54
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -3
Query:  403 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 495
            NLSFRELRFSSSVSCKE+PNRSARRIFF*IL
Sbjct: 1772 NLSFRELRFSSSVSCKEMPNRSARRIFF*IL 1864

HSP 3 
Score: 63.3837 bits (132), Expect = 8.71188e-54
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -2
Query:  248 ALRIVAGLRIGIDGGYRRLIGSLIGWL 328
            ALR VAGLRIGIDGGYRRLIGSLIGWL
Sbjct: 1942 ALRFVAGLRIGIDGGYRRLIGSLIGWL 2022

HSP 4 
Score: 35.8912 bits (72), Expect = 8.71188e-54
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -2
Query:  374 TTDLLLNIGSRIHINNIP 427
            T DLLLNIG RI INN+P
Sbjct: 1840 TADLLLNIGIRIRINNVP 1893

HSP 5 
Score: 74.8389 bits (157), Expect = 7.78168e-34
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = -1
Query:  393 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 497
            QTS FVNYASPPR*VARK RIARH GSSSEYW PD
Sbjct: 1770 QTSLFVNYASPPR*VARKCRIARHGGSSSEYWNPD 1874

HSP 6 
Score: 73.0061 bits (153), Expect = 7.78168e-34
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = -3
Query:   13 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRE 135
            A A  VVVGLLRLSCSDESVAIV*ENRR RENYGER+  RE
Sbjct: 2138 AAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGERDE*RE 2260

HSP 7 
Score: 30.3927 bits (60), Expect = 7.78168e-34
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  258 WLQKADRKPH 287
            WLQKADRKPH
Sbjct: 1983 WLQKADRKPH 2012

HSP 8 
Score: 86.2941 bits (182), Expect = 1.95844e-32
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  375 GMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 497
            G LLM IR+PIFRRRS VPSDS FPCNSPRRRSVIHE+RGL
Sbjct: 1770 GTLLMRIRIPIFRRRSAVPSDSAFPCNSPRRRSVIHEKRGL 1892

HSP 9 
Score: 72.5479 bits (152), Expect = 1.95844e-32
Identity = 34/59 (57.63%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   13 LSTHLSLAVILTRSPILSHNGHRFIRATXXXXXXXXXXCFCXXXXXXXXXXXQYHYYCC 189
            LS  +SLAVILT+SPILSHNGHRFIRAT        XXC C           QYHY CC
Sbjct: 2084 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKP*TNPRRRQYHYCCC 2260

HSP 10 
Score: 70.2581 bits (152), Expect = 1.13169e-25
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  404 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 496
            NIQKKIRRAERFGISLQLTEEEKRNSRKERF
Sbjct: 1771 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 1863

HSP 11 
Score: 65.8362 bits (142), Expect = 1.13169e-25
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:   47 RDLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            R+LRFSHTMATDSSEQLNLNNP   XXA+AEENPK+
Sbjct: 2119 RNLRFSHTMATDSSEQLNLNNPTTTXXAAAEENPKQ 2226

HSP 12 
Score: 68.424 bits (143), Expect = 1.01258e-23
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  403 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 495
            QYSEEDP CRAIR+FLATHRGGEA*FTK EV
Sbjct: 1772 QYSEEDPPCRAIRHFLATHRGGEA*FTKREV 1864

HSP 13 
Score: 61.0927 bits (127), Expect = 1.01258e-23
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3
Query:   12 SLYSSLSRRNSHAISDSLTQWPPIHQSN 95
            SL   LSRRNSHAISDSLTQWPPIHQSN
Sbjct: 2178 SLSIRLSRRNSHAISDSLTQWPPIHQSN 2261

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig42794_v29.0451e-5483.33%
CCall_contig42794_v2
HSP 1 
Score: 94.5419 bits (200), Expect = 9.0451e-54
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = -1
Query:   12 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VER 173
            YCRRLGF *GFL Q+Q  ***GC*G*VALMNRWPLCERIGD VRITARE   ER
Sbjct: 2100 YCRRLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRER 2261

HSP 2 
Score: 69.7986 bits (146), Expect = 9.0451e-54
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -3
Query:  403 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 495
            NLSFRELRFSSSVSCKE+PNRSARRIFF*IL
Sbjct: 1772 NLSFRELRFSSSVSCKEMPNRSARRIFF*IL 1864

HSP 3 
Score: 63.3837 bits (132), Expect = 9.0451e-54
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -2
Query:  248 ALRIVAGLRIGIDGGYRRLIGSLIGWL 328
            ALR VAGLRIGIDGGYRRLIGSLIGWL
Sbjct: 1942 ALRFVAGLRIGIDGGYRRLIGSLIGWL 2022

HSP 4 
Score: 35.8912 bits (72), Expect = 9.0451e-54
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -2
Query:  374 TTDLLLNIGSRIHINNIP 427
            T DLLLNIG RI INN+P
Sbjct: 1840 TADLLLNIGIRIRINNVP 1893

HSP 5 
Score: 74.8389 bits (157), Expect = 8.07932e-34
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = -1
Query:  393 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 497
            QTS FVNYASPPR*VARK RIARH GSSSEYW PD
Sbjct: 1770 QTSLFVNYASPPR*VARKCRIARHGGSSSEYWNPD 1874

HSP 6 
Score: 73.0061 bits (153), Expect = 8.07932e-34
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = -3
Query:   13 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRE 135
            A A  VVVGLLRLSCSDESVAIV*ENRR RENYGER+  RE
Sbjct: 2138 AAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGERDE*RE 2260

HSP 7 
Score: 30.3927 bits (60), Expect = 8.07932e-34
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  258 WLQKADRKPH 287
            WLQKADRKPH
Sbjct: 1983 WLQKADRKPH 2012

HSP 8 
Score: 86.2941 bits (182), Expect = 2.0346e-32
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  375 GMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 497
            G LLM IR+PIFRRRS VPSDS FPCNSPRRRSVIHE+RGL
Sbjct: 1770 GTLLMRIRIPIFRRRSAVPSDSAFPCNSPRRRSVIHEKRGL 1892

HSP 9 
Score: 72.5479 bits (152), Expect = 2.0346e-32
Identity = 34/59 (57.63%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   13 LSTHLSLAVILTRSPILSHNGHRFIRATXXXXXXXXXXCFCXXXXXXXXXXXQYHYYCC 189
            LS  +SLAVILT+SPILSHNGHRFIRAT        XXC C           QYHY CC
Sbjct: 2084 LSLFVSLAVILTQSPILSHNGHRFIRATQPQQPYYYXXCCCGRKP*TNPRRRQYHYCCC 2260

HSP 10 
Score: 70.2581 bits (152), Expect = 1.17571e-25
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  404 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 496
            NIQKKIRRAERFGISLQLTEEEKRNSRKERF
Sbjct: 1771 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 1863

HSP 11 
Score: 65.8362 bits (142), Expect = 1.17571e-25
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:   47 RDLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            R+LRFSHTMATDSSEQLNLNNP   XXA+AEENPK+
Sbjct: 2119 RNLRFSHTMATDSSEQLNLNNPTTTXXAAAEENPKQ 2226

HSP 12 
Score: 68.424 bits (143), Expect = 1.05197e-23
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  403 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 495
            QYSEEDP CRAIR+FLATHRGGEA*FTK EV
Sbjct: 1772 QYSEEDPPCRAIRHFLATHRGGEA*FTKREV 1864

HSP 13 
Score: 61.0927 bits (127), Expect = 1.05197e-23
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3
Query:   12 SLYSSLSRRNSHAISDSLTQWPPIHQSN 95
            SL   LSRRNSHAISDSLTQWPPIHQSN
Sbjct: 2178 SLSIRLSRRNSHAISDSLTQWPPIHQSN 2261

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig18167_v26.30035e-70100.00%
Oall_contig18167_v2
HSP 1 
Score: 123.409 bits (263), Expect = 6.30035e-70
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -1
Query:    3 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VERDXL 173
            YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VERDXL
Sbjct:   52 YCRRLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARER*VERDXL 222

HSP 2 
Score: 105.081 bits (223), Expect = 6.30035e-70
Identity = 47/60 (78.33%), Postives = 47/60 (78.33%), Query Frame = -2
Query:  248 TTDLLLNIGSRIHINNIPCXXXXXXXXXXXXXGALRIVAGLRIGIDGGYRRLIGSLIGWL 427
            TTDLLLNIGSRIHINNIPC             GALRIVAGLRIGIDGGYRRLIGSLIGWL
Sbjct:  297 TTDLLLNIGSRIHINNIPCYRRGSRGGGGGGYGALRIVAGLRIGIDGGYRRLIGSLIGWL 476

HSP 3 
Score: 71.1732 bits (149), Expect = 6.30035e-70
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -3
Query:  403 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 495
            NLSFRELRFSSSVSCKEIPNRSARRIFF*IL
Sbjct:  452 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 544

HSP 4 
Score: 97.7493 bits (207), Expect = 3.94522e-47
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -3
Query:    1 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRERXAG 135
            AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRERXAG
Sbjct:   50 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRERXAG 184

HSP 5 
Score: 88.5852 bits (187), Expect = 3.94522e-47
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -1
Query:  393 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 497
            QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD
Sbjct:  442 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 546

HSP 6 
Score: 30.3927 bits (60), Expect = 3.94522e-47
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  258 WLQKADRKPH 287
            WLQKADRKPH
Sbjct:  307 WLQKADRKPH 336

HSP 7 
Score: 23.9778 bits (46), Expect = 3.94522e-47
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  301 LFESSPDFA 327
            LFESSPDFA
Sbjct:  350 LFESSPDFA 376

HSP 8 
Score: 104.622 bits (222), Expect = 2.02156e-45
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  372 QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 497
            QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL
Sbjct:  421 QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 546

HSP 9 
Score: 96.8329 bits (205), Expect = 2.02156e-45
Identity = 42/63 (66.67%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 PSXSLSTHLSLAVILTRSPILSHNGHRFIRATXXXXXXXXXXCFCXXXXXXXXXXXQYHYYCC 189
            PSXSLSTHLSLAVILTRSPILSHNGHRFIRAT          CFC           QYHYYCC
Sbjct:   50 PSXSLSTHLSLAVILTRSPILSHNGHRFIRATQPQQPYYYYYCFCRRKP*KNPRRRQYHYYCC 238

HSP 10 
Score: 77.5882 bits (163), Expect = 2.35735e-31
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3
Query:    3 QPISLYSSLSRRNSHAISDSLTQWPPIHQSN 95
            QPISLYSSLSRRNSHAISDSLTQWPPIHQSN
Sbjct:   52 QPISLYSSLSRRNSHAISDSLTQWPPIHQSN 144

HSP 11 
Score: 76.6717 bits (161), Expect = 2.35735e-31
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1
Query:  403 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 495
            QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV
Sbjct:  452 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 544

HSP 12 
Score: 71.1425 bits (154), Expect = 1.56926e-27
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 2
Query:   47 RDLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            RDLRFSHTMATDSSEQLNLNNP     ASAEENPKK
Sbjct:   96 RDLRFSHTMATDSSEQLNLNNPTTTTTASAEENPKK 203

HSP 13 
Score: 70.2581 bits (152), Expect = 1.56926e-27
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  404 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 496
            NIQKKIRRAERFGISLQLTEEEKRNSRKERF
Sbjct:  453 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 545

Oall_contig29302_v23.63182e-1986.96%
Oall_contig29302_v2
HSP 1 
Score: 48.721 bits (100), Expect = 3.63182e-19
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = -2
Query:  251 IVAGLRIGIDGGYRRLIGSLIGW 319
            I+A LRI IDGGYRRLIGSLIGW
Sbjct:  135 ILAVLRIXIDGGYRRLIGSLIGW 203

HSP 2 
Score: 38.6404 bits (78), Expect = 3.63182e-19
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -1
Query:   51 VALMNRWPLCERIGD 95
            + LMNRWPLCERIGD
Sbjct:  319 LVLMNRWPLCERIGD 363

HSP 3 
Score: 29.4763 bits (58), Expect = 3.63182e-19
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -2
Query:  371 IGSRIHINNIPC 406
            IGS +HINNIPC
Sbjct:   71 IGSWVHINNIPC 106

HSP 4 
Score: 25.8106 bits (50), Expect = 3.63182e-19
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  135 CRRLGFF*GFLL 170
            CRRLGF  GFLL
Sbjct:  258 CRRLGFVXGFLL 293

Oall_contig18166_v21.16055e-1788.10%
Oall_contig18166_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 1.16055e-17
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -1
Query:   27 F*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 152
            F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   50 F*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 175

HSP 2 
Score: 24.8942 bits (48), Expect = 1.16055e-17
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1
Query:  150 YCRRLGFF 173
            YCRRLGFF
Sbjct:  172 YCRRLGFF 195

HSP 3 
Score: 73.4643 bits (154), Expect = 9.70409e-14
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = -3
Query:    1 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRERXAG 135
            A AVVVVVGLLRLSCSDESVAIV*ENRR  ENY ER    ER  G
Sbjct:   24 AAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYREXERERG 158

HSP 4 
Score: 65.394 bits (141), Expect = 1.3956e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2
Query:   50 DLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            +LRFSHTMATDSSEQLNLNNP     A+AEENPKK
Sbjct:   73 NLRFSHTMATDSSEQLNLNNPTTTTTAAAEENPKK 177

HSP 5 
Score: 22.6031 bits (43), Expect = 1.3956e-12
Identity = 6/7 (85.71%), Postives = 6/7 (85.71%), Query Frame = 1
Query:  169 QYHYYCC 189
            QYHY CC
Sbjct:  191 QYHYCCC 211

Oall_contig21883_v27.11279e-1769.23%
Oall_contig21883_v2
HSP 1 
Score: 40.0151 bits (81), Expect = 7.11279e-17
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = -2
Query:  251 ALRIVAGLRIGIDGGYRRLIGSLIGW 328
            AL I+  L I IDGGY+RLI SLIGW
Sbjct:  593 AL*ILVVLLIRIDGGYKRLIESLIGW 670

HSP 2 
Score: 38.1822 bits (77), Expect = 7.11279e-17
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -1
Query:   39 *G*VALMNRWPLCERIGDRVRI 104
            *G*V LMNRWPLCE I D  R+
Sbjct:  779 *G*VGLMNRWPLCEGIXDCXRM 844

HSP 3 
Score: 33.6001 bits (67), Expect = 7.11279e-17
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  371 IGSRIHINNIPC 406
            IGSRIHINNIPC
Sbjct:  538 IGSRIHINNIPC 573

HSP 4 
Score: 24.8942 bits (48), Expect = 7.11279e-17
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  135 CRRLGFF*GFLL 170
            CRRLGF *G LL
Sbjct:  728 CRRLGFV*GXLL 763

Oall_contig25470_v21.69147e-1682.61%
Oall_contig25470_v2
HSP 1 
Score: 82.6285 bits (174), Expect = 1.69147e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -1
Query:   27 RLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 164
            R+  F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   13 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 150

HSP 2 
Score: 68.424 bits (143), Expect = 3.19326e-12
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = -3
Query:   16 AVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSR 129
            AVVVVVGLLRLSCSDESVAIV*ENRR  ENY ER   R
Sbjct:    2 AVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 115

HSP 3 
Score: 63.6252 bits (137), Expect = 8.74695e-11
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query:   50 DLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            +LRFSHTMATDSSEQLNLNNP     A+ EENPKK
Sbjct:   36 NLRFSHTMATDSSEQLNLNNPTTTTTAAVEENPKK 140

Blast Hits to Contig V2 RO454

Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig26232_v24.98179e-3978.33%
RO454_contig26232_v2
HSP 1 
Score: 105.081 bits (223), Expect = 4.98179e-39
Identity = 47/60 (78.33%), Postives = 47/60 (78.33%), Query Frame = -2
Query:  248 TTDLLLNIGSRIHINNIPCXXXXXXXXXXXXXGALRIVAGLRIGIDGGYRRLIGSLIGWL 427
            TTDLLLNIGSRIHINNIPC             GALRIVAGLRIGIDGGYRRLIGSLIGWL
Sbjct:  203 TTDLLLNIGSRIHINNIPCYRRGSRGGGGGGYGALRIVAGLRIGIDGGYRRLIGSLIGWL 382

HSP 2 
Score: 71.1732 bits (149), Expect = 4.98179e-39
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -3
Query:  403 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 495
            NLSFRELRFSSSVSCKEIPNRSARRIFF*IL
Sbjct:  135 NLSFRELRFSSSVSCKEIPNRSARRIFF*IL 227

HSP 3 
Score: 88.5852 bits (187), Expect = 4.22236e-24
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -1
Query:  393 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 497
            QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD
Sbjct:  133 QTSPFVNYASPPR*VARKFRIARHDGSSSEYWKPD 237

HSP 4 
Score: 30.3927 bits (60), Expect = 4.22236e-24
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  258 WLQKADRKPH 287
            WLQKADRKPH
Sbjct:  343 WLQKADRKPH 372

HSP 5 
Score: 23.9778 bits (46), Expect = 4.22236e-24
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  301 LFESSPDFA 327
            LFESSPDFA
Sbjct:  303 LFESSPDFA 329

HSP 6 
Score: 104.622 bits (222), Expect = 2.44291e-23
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  372 QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 497
            QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL
Sbjct:  133 QGMLLMWIRLPIFRRRSVVPSDSEFPCNSPRRRSVIHERRGL 258

HSP 7 
Score: 76.6717 bits (161), Expect = 6.33743e-15
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1
Query:  403 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 495
            QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV
Sbjct:  135 QYSEEDPSCRAIRNFLATHRGGEA*FTKGEV 227

HSP 8 
Score: 70.2581 bits (152), Expect = 5.40253e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2
Query:  404 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 496
            NIQKKIRRAERFGISLQLTEEEKRNSRKERF
Sbjct:  134 NIQKKIRRAERFGISLQLTEEEKRNSRKERF 226

RO454_contig12363_v27.10774e-1888.10%
RO454_contig12363_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 7.10774e-18
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -1
Query:   27 F*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 152
            F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   50 F*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 175

HSP 2 
Score: 24.8942 bits (48), Expect = 7.10774e-18
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1
Query:  150 YCRRLGFF 173
            YCRRLGFF
Sbjct:  172 YCRRLGFF 195

HSP 3 
Score: 73.4643 bits (154), Expect = 5.85403e-14
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = -3
Query:    1 AEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSRERXAG 135
            A AVVVVVGLLRLSCSDESVAIV*ENRR  ENY ER    ER  G
Sbjct:   24 AAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYREXERERG 158

HSP 4 
Score: 65.394 bits (141), Expect = 8.54591e-13
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2
Query:   50 DLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            +LRFSHTMATDSSEQLNLNNP     A+AEENPKK
Sbjct:   73 NLRFSHTMATDSSEQLNLNNPTTTTTAAAEENPKK 177

HSP 5 
Score: 22.6031 bits (43), Expect = 8.54591e-13
Identity = 6/7 (85.71%), Postives = 6/7 (85.71%), Query Frame = 1
Query:  169 QYHYYCC 189
            QYHY CC
Sbjct:  191 QYHYCCC 211

RO454_contig17798_v21.02039e-1682.61%
RO454_contig17798_v2
HSP 1 
Score: 82.6285 bits (174), Expect = 1.02039e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -1
Query:   27 RLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 164
            R+  F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   13 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 150

HSP 2 
Score: 68.424 bits (143), Expect = 1.92635e-12
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = -3
Query:   16 AVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSR 129
            AVVVVVGLLRLSCSDESVAIV*ENRR  ENY ER   R
Sbjct:    2 AVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 115

HSP 3 
Score: 63.6252 bits (137), Expect = 5.27016e-11
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query:   50 DLRFSHTMATDSSEQLNLNNPXXXXXASAEENPKK 154
            +LRFSHTMATDSSEQLNLNNP     A+ EENPKK
Sbjct:   36 NLRFSHTMATDSSEQLNLNNPTTTTTAAVEENPKK 140

RO454_contig20689_v25.2123e-1578.26%
RO454_contig20689_v2
HSP 1 
Score: 42.3061 bits (86), Expect = 5.2123e-15
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = -2
Query:  251 IVAGLRIGIDGGYRRLIGSLIGW 319
            I+A LRI IDGGYRRLI SLI W
Sbjct:  135 ILAVLRIXIDGGYRRLIXSLIXW 203

HSP 2 
Score: 40.0151 bits (81), Expect = 5.2123e-15
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:   51 VALMNRWPLCERIGD 95
            V LMNRWPLCERIGD
Sbjct:  317 VGLMNRWPLCERIGD 361

HSP 3 
Score: 29.4763 bits (58), Expect = 5.2123e-15
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -2
Query:  371 IGSRIHINNIPC 406
            IGS +HINNIPC
Sbjct:   71 IGSWVHINNIPC 106

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