WO454_contig2474_v2
| Name | WO454_contig2474_v2 |
|---|---|
| Accession | ID3281671 |
| Sequence | CTTGTTCATTATTATGGTGGGAGGTTATTTCAGGAACCTGTCTTTTGTAA |
| Length | 342 |
| Type | contig |
| Organism | White Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
ESTs in this contig
| Type | Feature | Position | ||
|---|---|---|---|---|
| EST | WOA_066578_0652_0458 | 0-235 | ||
| EST | WOA_107780_0175_2895 | 36-342 | ||
| microsatellite | WO454_contig2474_v2-ssr315 | 314 | 329 | 0 |
InterProScan Analysis
Analysis Date: 11-18-2009
(Interpro: WO454_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig27987_v2 | 3.02749e-15 | 82.86% | ||
AC454_contig27987_v2 | ||||
HSP 1 Score: 77.13 bits (162), Expect = 3.02749e-15 Query: 126 IITRLLNWGLGL*TYGTNAAYFCNSECFILFLSNW 230 HSP 2 Score: 73.9225 bits (155), Expect = 2.79656e-14 Query: 127 TSCLETK*SIHCYKNMLHWCHMFITPIPN*VVL** 231 HSP 3 Score: 69.7986 bits (146), Expect = 4.87568e-13 Query: 128 YYKTT*LGIGVMNIWHQCSIFL*Q*MLYFVSKQLV 232 HSP 4 Score: 68.424 bits (143), Expect = 1.26427e-12 Query: 127 LLQDYLIGDWGYEHMAPMQHIFVTVNALF 213 HSP 5 Score: 62.9255 bits (131), Expect = 5.71548e-11 Query: 126 NKAFTVTKICCIGAICS*PQSPIK*SCNN 212 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig40366_v2 | 8.18736e-41 | 92.31% | ||
CC454_contig40366_v2 | ||||
HSP 1 Score: 95.0001 bits (201), Expect = 8.18736e-41 Query: 126 IITRLLNWGLGL*TYGTNAAYFCNSECFILFLSNWWXRK 242 HSP 2 Score: 62.4673 bits (130), Expect = 8.18736e-41 Query: 51 E*HLSRLV*KYILKSSNFCDTINEIIITRLL 143 HSP 3 Score: 43.6807 bits (89), Expect = 8.18736e-41 Query: 3 CSLLWWEVISGTCLL* 50 HSP 4 Score: 84.0031 bits (177), Expect = 2.70748e-37 Query: 127 LLQDYLIGDWGYEHMAPMQHIFVTVNALFCF*ATGGEEN 243 HSP 5 Score: 61.5509 bits (128), Expect = 2.70748e-37 Query: 50 RITPLTFGLKIYIEEFELL*HNK*DYY 130 HSP 6 Score: 43.6807 bits (89), Expect = 2.70748e-37 Query: 1 LVHYYGGRLFQEPVFCK 51 HSP 7 Score: 78.9628 bits (166), Expect = 3.88847e-35 Query: 127 TSCLETK*SIHCYKNMLHWCHMFITPIPN*VVL** 231 HSP 8 Score: 61.5509 bits (128), Expect = 3.88847e-35 Query: 42 NNLIYCVTEVRTLQYIFSNQT*EVLFLQK 128 HSP 9 Score: 41.3897 bits (84), Expect = 3.88847e-35 Query: 2 YKRQVPEITSHHNNEQ 49 HSP 10 Score: 78.5046 bits (165), Expect = 3.02396e-33 Query: 126 FSSPPVA*KQNKAFTVTKICCIGAICS*PQSPIK*SCNN 242 HSP 11 Score: 59.718 bits (124), Expect = 3.02396e-33 Query: 43 **SHLLCHRSSNSSIYIFKPNVRGVILTK 129 HSP 12 Score: 37.2658 bits (75), Expect = 3.02396e-33 Query: 1 VILTKDRFLK*PPTIIMNK 57 HSP 13 Score: 79.421 bits (167), Expect = 1.45025e-31 Query: 128 YYKTT*LGIGVMNIWHQCSIFL*Q*MLYFVSKQLV 232 HSP 14 Score: 72.5479 bits (152), Expect = 1.45025e-31 Query: 19 GRLFQEPVFCKNNTSHVWFENIY*RVRTSVTQ*MRLLLQDY 141 HSP 15 Score: 73.4643 bits (154), Expect = 1.05194e-25 Query: 146 FLXHQLLRNKIKHSLLQKYAALVPYVHNPNPQ 241 HSP 16 Score: 46.43 bits (95), Expect = 1.05194e-25 Query: 41 QKFELFNIYFQTKRERCYSYKR 106 HSP 17 Score: 29.9345 bits (59), Expect = 1.05194e-25 Query: 3 LQKTGS*NNLPP***T 50 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig14711_v2 | 8.44093e-41 | 92.31% | ||
CCall_contig14711_v2 | ||||
HSP 1 Score: 95.0001 bits (201), Expect = 8.44093e-41 Query: 126 IITRLLNWGLGL*TYGTNAAYFCNSECFILFLSNWWXRK 242 HSP 2 Score: 62.4673 bits (130), Expect = 8.44093e-41 Query: 51 E*HLSRLV*KYILKSSNFCDTINEIIITRLL 143 HSP 3 Score: 43.6807 bits (89), Expect = 8.44093e-41 Query: 3 CSLLWWEVISGTCLL* 50 HSP 4 Score: 84.0031 bits (177), Expect = 2.78982e-37 Query: 127 LLQDYLIGDWGYEHMAPMQHIFVTVNALFCF*ATGGEEN 243 HSP 5 Score: 61.5509 bits (128), Expect = 2.78982e-37 Query: 50 RITPLTFGLKIYIEEFELL*HNK*DYY 130 HSP 6 Score: 43.6807 bits (89), Expect = 2.78982e-37 Query: 1 LVHYYGGRLFQEPVFCK 51 HSP 7 Score: 78.9628 bits (166), Expect = 4.00523e-35 Query: 127 TSCLETK*SIHCYKNMLHWCHMFITPIPN*VVL** 231 HSP 8 Score: 61.5509 bits (128), Expect = 4.00523e-35 Query: 42 NNLIYCVTEVRTLQYIFSNQT*EVLFLQK 128 HSP 9 Score: 41.3897 bits (84), Expect = 4.00523e-35 Query: 2 YKRQVPEITSHHNNEQ 49 HSP 10 Score: 78.5046 bits (165), Expect = 3.11362e-33 Query: 126 FSSPPVA*KQNKAFTVTKICCIGAICS*PQSPIK*SCNN 242 HSP 11 Score: 59.718 bits (124), Expect = 3.11362e-33 Query: 43 **SHLLCHRSSNSSIYIFKPNVRGVILTK 129 HSP 12 Score: 37.2658 bits (75), Expect = 3.11362e-33 Query: 1 VILTKDRFLK*PPTIIMNK 57 HSP 13 Score: 79.421 bits (167), Expect = 1.49874e-31 Query: 128 YYKTT*LGIGVMNIWHQCSIFL*Q*MLYFVSKQLV 232 HSP 14 Score: 72.5479 bits (152), Expect = 1.49874e-31 Query: 19 GRLFQEPVFCKNNTSHVWFENIY*RVRTSVTQ*MRLLLQDY 141 HSP 15 Score: 73.4643 bits (154), Expect = 1.08109e-25 Query: 146 FLXHQLLRNKIKHSLLQKYAALVPYVHNPNPQ 241 HSP 16 Score: 46.43 bits (95), Expect = 1.08109e-25 Query: 41 QKFELFNIYFQTKRERCYSYKR 106 HSP 17 Score: 29.9345 bits (59), Expect = 1.08109e-25 Query: 3 LQKTGS*NNLPP***T 50 | ||||
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Blast Hits to Contig V2 Oall
Analysis Date: 11-18-2009 (Blast: WO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
Oall_contig18528_v2 | 2.54185e-58 | 98.84% | ||
Oall_contig18528_v2 | ||||
HSP 1 Score: 211.843 bits (456), Expect = 2.54185e-58 Query: 1 LVHYYGGRLFQEPVFCKNNTSHVWFENIY*RVRTSVTQ*MRLLLQDYLIGDWGYEHMAPMQHIFVTVNALFCF*ATGGEENXSYID 258 HSP 2 Score: 29.4763 bits (58), Expect = 2.54185e-58 Query: 309 VERTEPNEREG 341 HSP 3 Score: 205.428 bits (442), Expect = 2.88388e-56 Query: 3 CSLLWWEVISGTCLL*E*HLSRLV*KYILKSSNFCDTINEIIITRLLNWGLGL*TYGTNAAYFCNSECFILFLSNWWXRKXIIYRQ 260 HSP 4 Score: 29.0181 bits (57), Expect = 2.88388e-56 Query: 308 RRTNRTERTGR 340 HSP 5 Score: 191.224 bits (411), Expect = 1.30545e-51 Query: 3 SIYDXFSSPPVA*KQNKAFTVTKICCIGAICS*PQSPIK*SCNNNLIYCVTEVRTLQYIFSNQT*EVLFLQKTGS*NNLPP***T 257 HSP 6 Score: 27.6434 bits (54), Expect = 1.30545e-51 Query: 308 PSRSFGSVRST 340 HSP 7 Score: 184.351 bits (396), Expect = 7.13076e-49 Query: 1 TSCLETK*SIHCYKNMLHWCHMFITPIPN*VVL***SHLLCHRSSNSSIYIFKPNVRGVILTKDRFLK*PPTIIMNK 231 HSP 8 Score: 25.3524 bits (49), Expect = 7.13076e-49 Query: 315 TFPFVRFGS 341 HSP 9 Score: 179.31 bits (385), Expect = 3.44598e-48 Query: 2 LFIIMVGGYFRNLSFVRITPLTFGLKIYIEEFELL*HNK*DYYYKTT*LGIGVMNIWHQCSIFL*Q*MLYFVSKQLV 232 HSP 10 Score: 28.1016 bits (55), Expect = 3.44598e-48 Query: 313 NEPNRTNGKV 342 HSP 11 Score: 173.812 bits (373), Expect = 3.59835e-44 Query: 2 CLYMIXFLXHQLLRNKIKHSLLQKYAALVPYVHNPNPQXXXXXXXXXXXXSQKFELFNIYFQTKRERCYSYKRQVPEITSHHNNEQ 259 | ||||
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