RO454_contig25298_v2
| Name | RO454_contig25298_v2 |
|---|---|
| Accession | ID3222215 |
| Sequence | CTAAAACATAATTGGTATTGGCACGTGGCTGAACGTTCCAAGCTTATTAT |
| Length | 329 |
| Type | contig |
| Organism | Red Oak |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
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Alignment Viewer
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | ROA_114599_0400_2826 | 0-237 |
| EST | ROA_080891_0873_1779 | 75-329 |
InterProScan Analysis
Analysis Date: 11-19-2009
(Interpro: RO454_contigs_v2)
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Blast Hits to Contigs V2 AC454
Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
AC454_contig17422_v2 | 2.08447e-29 | 76.56% | ||
AC454_contig17422_v2 | ||||
HSP 1 Score: 109.663 bits (233), Expect = 2.08447e-29 Query: 98 DIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGS 289 HSP 2 Score: 34.0583 bits (68), Expect = 2.08447e-29 Query: 285 EVGIRNVTRSWMCEP 329 HSP 3 Score: 106.914 bits (227), Expect = 2.29962e-27 Query: 99 FPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 287 HSP 4 Score: 29.9345 bits (59), Expect = 2.29962e-27 Query: 297 RLAHPTPSYVS 329 HSP 5 Score: 102.331 bits (217), Expect = 3.4563e-25 Query: 97 PTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISIS 285 HSP 6 Score: 27.1852 bits (53), Expect = 3.4563e-25 Query: 290 GSHIQLLVTFRIP 328 HSP 7 Score: 99.124 bits (210), Expect = 5.16821e-23 Query: 98 SSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDI 280 HSP 8 Score: 23.0613 bits (44), Expect = 5.16821e-23 Query: 298 ARTSNS*LRF 327 HSP 9 Score: 93.6255 bits (198), Expect = 6.3061e-22 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGK 288 HSP 10 Score: 24.8942 bits (48), Expect = 6.3061e-22 Query: 298 ET*LGVGCAS 327 HSP 11 Score: 61.0927 bits (127), Expect = 6.39617e-12 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWE 287 HSP 12 Score: 23.5196 bits (45), Expect = 6.39617e-12 Query: 299 KRN*ELDVRA 328 | ||||
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig19675_v2 | 3.82672e-29 | 76.56% | ||
CC454_contig19675_v2 | ||||
HSP 1 Score: 109.663 bits (233), Expect = 3.82672e-29 Query: 98 DIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGS 289 HSP 2 Score: 34.0583 bits (68), Expect = 3.82672e-29 Query: 285 EVGIRNVTRSWMCEP 329 HSP 3 Score: 111.496 bits (237), Expect = 1.83584e-28 Query: 99 FPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 287 HSP 4 Score: 29.9345 bits (59), Expect = 1.83584e-28 Query: 297 RLAHPTPSYVS 329 HSP 5 Score: 102.79 bits (218), Expect = 4.63528e-25 Query: 98 SSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDI 280 HSP 6 Score: 27.1852 bits (53), Expect = 4.63528e-25 Query: 290 GSHIQLLVTFRIP 328 HSP 7 Score: 102.331 bits (217), Expect = 1.06049e-23 Query: 97 PTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISIS 285 HSP 8 Score: 23.0613 bits (44), Expect = 1.06049e-23 Query: 298 ARTSNS*LRF 327 HSP 9 Score: 96.3747 bits (204), Expect = 1.77084e-22 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGK 288 HSP 10 Score: 24.8942 bits (48), Expect = 1.77084e-22 Query: 298 ET*LGVGCAS 327 HSP 11 Score: 64.7583 bits (135), Expect = 9.78482e-13 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWE 287 HSP 12 Score: 23.5196 bits (45), Expect = 9.78482e-13 Query: 299 KRN*ELDVRA 328 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig6670_v2 | 3.95883e-29 | 76.56% | ||
CCall_contig6670_v2 | ||||
HSP 1 Score: 109.663 bits (233), Expect = 3.95883e-29 Query: 98 DIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGS 289 HSP 2 Score: 34.0583 bits (68), Expect = 3.95883e-29 Query: 285 EVGIRNVTRSWMCEP 329 HSP 3 Score: 111.496 bits (237), Expect = 1.89909e-28 Query: 99 FPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 287 HSP 4 Score: 29.9345 bits (59), Expect = 1.89909e-28 Query: 297 RLAHPTPSYVS 329 HSP 5 Score: 102.79 bits (218), Expect = 4.79317e-25 Query: 98 SSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDI 280 HSP 6 Score: 27.1852 bits (53), Expect = 4.79317e-25 Query: 290 GSHIQLLVTFRIP 328 HSP 7 Score: 102.331 bits (217), Expect = 1.09642e-23 Query: 97 PTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISIS 285 HSP 8 Score: 23.0613 bits (44), Expect = 1.09642e-23 Query: 298 ARTSNS*LRF 327 HSP 9 Score: 96.3747 bits (204), Expect = 1.83053e-22 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGK 288 HSP 10 Score: 24.8942 bits (48), Expect = 1.83053e-22 Query: 298 ET*LGVGCAS 327 HSP 11 Score: 64.7583 bits (135), Expect = 1.00921e-12 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWE 287 HSP 12 Score: 23.5196 bits (45), Expect = 1.00921e-12 Query: 299 KRN*ELDVRA 328 | ||||
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Blast Hits to Contig V2 Oall
Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
Oall_contig35750_v2 | 3.42841e-40 | 85.71% | ||
Oall_contig35750_v2 | ||||
HSP 1 Score: 160.524 bits (344), Expect = 3.42841e-40 Query: 99 RLAHPTPSYVSNPHFPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 329 HSP 2 Score: 158.233 bits (339), Expect = 1.6779e-39 Query: 92 GSHIQLLVTFRIPTSHSSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDILH 328 HSP 3 Score: 151.818 bits (325), Expect = 1.43169e-37 Query: 92 VXDIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGSGDSKRN*ELDVRA 328 HSP 4 Score: 143.112 bits (306), Expect = 5.97867e-35 Query: 91 ARTSNS*LRFESPLPTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISISXT 327 HSP 5 Score: 130.74 bits (279), Expect = 3.16838e-31 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGKWGFET*LGVGCAS 327 HSP 6 Score: 104.164 bits (221), Expect = 3.16985e-23 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWEVGIRNVTRSWMCEP 329 HSP 7 Score: 74.3807 bits (156), Expect = 2.92942e-14 Query: 1 LKHNWYWHVAERSKLIIEWVVGEMHKXR 84 HSP 8 Score: 72.0897 bits (151), Expect = 5.37894e-14 Query: 1 PXFMHLPHHPLNNKLGTFSHVPIPIMF* 84 HSP 9 Score: 23.5196 bits (45), Expect = 5.37894e-14 Query: 240 PTPSYVSNPHFPLQLFLPWKPPKPEY 317 HSP 10 Score: 72.0897 bits (151), Expect = 1.43369e-13 Query: 2 *NIIGIGTWLNVPSLLLSGWWGRCINXG 85 HSP 11 Score: 65.6747 bits (137), Expect = 1.22331e-11 Query: 3 LXLCISPTTHSIISLERSATCQYQLCF 83 | ||||
Oall_contig8152_v2 | 1.67829e-35 | 78.95% | ||
Oall_contig8152_v2 | ||||
HSP 1 Score: 144.945 bits (310), Expect = 1.67829e-35 Query: 99 LAHPTPSYVSNPHFPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 326 HSP 2 Score: 142.654 bits (305), Expect = 8.21371e-35 Query: 92 VTFRIPTSHSSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDILH 307 HSP 3 Score: 141.737 bits (303), Expect = 1.55027e-34 Query: 92 VXDIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGSGDSKRN*ELD 319 HSP 4 Score: 132.115 bits (282), Expect = 1.22189e-31 Query: 91 LRFESPLPTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISISXT 306 HSP 5 Score: 117.911 bits (251), Expect = 2.30676e-27 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGKWGFET*LGVG 318 HSP 6 Score: 84.4613 bits (178), Expect = 3.76167e-22 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWEVGIRNVT 308 HSP 7 Score: 35.433 bits (71), Expect = 3.76167e-22 Query: 289 WGFET*LGVGCAS 327 HSP 8 Score: 69.3404 bits (145), Expect = 9.63966e-13 Query: 1 LKHNWYWHVAERSKLIIEWVVGEMHKXR 84 HSP 9 Score: 64.7583 bits (135), Expect = 2.30891e-11 Query: 2 *NIIGIGTWLNVPSLLLSGWWGRCI 76 HSP 10 Score: 64.3001 bits (134), Expect = 3.17206e-11 Query: 1 MHLPHHPLNNKLGTFSHVPIPIMF* 75 HSP 11 Score: 63.3837 bits (132), Expect = 5.98702e-11 Query: 3 LXLCISPTTHSIISLERSATCQYQLCF 83 | ||||
Oall_contig36870_v2 | 1.81814e-24 | 81.48% | ||
Oall_contig36870_v2 | ||||
HSP 1 Score: 108.288 bits (230), Expect = 1.81814e-24 Query: 168 RLAHPTPSYVSNPHFPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHR 329 HSP 2 Score: 102.79 bits (218), Expect = 8.21944e-23 Query: 149 HQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGSGDSKRN*ELDVRA 328 HSP 3 Score: 101.415 bits (215), Expect = 2.13131e-22 Query: 164 GSHIQLLVTFRIPTSHSSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEG 328 HSP 4 Score: 85.8359 bits (181), Expect = 1.04332e-17 Query: 169 ARTSNS*LRFESPLPTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA* 327 HSP 5 Score: 76.6717 bits (161), Expect = 5.98562e-15 Query: 169 LCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGKWGFET*LGVGCAS 327 HSP 6 Score: 74.8389 bits (157), Expect = 2.1323e-14 Query: 165 PSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWEVGIRNVTRSWMCEP 329 | ||||
Oall_contig38666_v2 | 3.17132e-15 | 91.43% | ||
Oall_contig38666_v2 | ||||
HSP 1 Score: 77.5882 bits (163), Expect = 3.17132e-15 Query: 92 VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDILH 196 HSP 2 Score: 75.7553 bits (159), Expect = 1.12974e-14 Query: 91 RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISISXT 207 HSP 3 Score: 72.0897 bits (151), Expect = 1.43369e-13 Query: 92 VXDIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYL 199 HSP 4 Score: 72.0897 bits (151), Expect = 1.43369e-13 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVP 198 HSP 5 Score: 70.2568 bits (147), Expect = 5.10732e-13 Query: 1 LKHNWYWHVAERSKLIIEWVVGEMHKXR 84 HSP 6 Score: 66.1329 bits (138), Expect = 8.90437e-12 Query: 99 GTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 197 HSP 7 Score: 64.7583 bits (135), Expect = 2.30891e-11 Query: 1 MHLPHHPLNNKLGTFSHVPIPIMF* 75 HSP 8 Score: 64.3001 bits (134), Expect = 3.17206e-11 Query: 2 *NIIGIGTWLNVPSLLLSGWWGRCI 76 HSP 9 Score: 63.8419 bits (133), Expect = 4.35789e-11 Query: 3 LXLCISPTTHSIISLERSATCQYQLCF 83 | ||||
Oall_contig35883_v2 | 1.12974e-14 | 87.50% | ||
Oall_contig35883_v2 | ||||
HSP 1 Score: 75.7553 bits (159), Expect = 1.12974e-14 Query: 234 RLAHPTPSYVSNPHFPLQLFLPWKPPKPEYNK 329 HSP 2 Score: 72.0897 bits (151), Expect = 1.43369e-13 Query: 237 IIFWLGRLPREKKLEWEVGIRNVTRSWMCEP 329 HSP 3 Score: 66.1329 bits (138), Expect = 8.90437e-12 Query: 236 YYILAWEASKGEKAGVGSGDSKRN*ELDVRA 328 HSP 4 Score: 65.2165 bits (136), Expect = 1.68063e-11 Query: 236 GSHIQLLVTFRIPTSHSSFFSLGSLPSQNII 328 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig3958_v2 | 2.00225e-43 | 89.61% | ||
WO454_contig3958_v2 | ||||
HSP 1 Score: 170.146 bits (365), Expect = 2.00225e-43 Query: 99 RLAHPTPSYVSNPHFPLQLFLPWKPPKPEYNKXXXXXXATREVVGTRRSELLHRGWNSIGAVRPLFNKSGFDA*SRY 329 HSP 2 Score: 163.273 bits (350), Expect = 2.34713e-41 Query: 92 GSHIQLLVTFRIPTSHSSFFSLGSLPSQNIIXXXXXXWPLEK**VREDLNYCIEGGIQLVQSDPYLTNLDSMLDLDILH 328 HSP 3 Score: 160.982 bits (345), Expect = 1.14871e-40 Query: 92 VXDIEIKHRIQIC*IRV*LHQLNSTLYAVVQIFSYLLLL*WPXXTXXXYYILAWEASKGEKAGVGSGDSKRN*ELDVRA 328 HSP 4 Score: 153.193 bits (328), Expect = 2.54153e-38 Query: 91 ARTSNS*LRFESPLPTPAFSPLEASQARI**XXXVXXGH*RSSRYEKI*TTA*RVEFNWCSQTLI*QIWIRCLISISXT 327 HSP 5 Score: 138.988 bits (297), Expect = 4.79806e-34 Query: 100 YRDQASNPDLLNKGLTAPIEFHPLCSSSDLLVPTTSLVAXXHXXXXXXXXXXXXXXRKSWSGKWGFET*LGVGCAS 327 HSP 6 Score: 113.787 bits (242), Expect = 1.85125e-26 Query: 126 FVK*GSDCTN*IPPSMQXXXXXXXXXXXXGHXXXXXXIIFWLGRLPREKKLEWEVGIRNVTRSWMCEP 329 HSP 7 Score: 72.0897 bits (151), Expect = 7.43111e-15 Query: 1 PXFMHLPHHPLNNKLGTFSHVPIPIMF* 84 HSP 8 Score: 24.436 bits (47), Expect = 7.43111e-15 Query: 240 PTPSYVSNPHFPLQLFLPWKPPKPEY 317 HSP 9 Score: 74.3807 bits (156), Expect = 1.34844e-14 Query: 1 LKHNWYWHVAERSKLIIEWVVGEMHKXR 84 HSP 10 Score: 72.0897 bits (151), Expect = 6.59941e-14 Query: 2 *NIIGIGTWLNVPSLLLSGWWGRCINXG 85 HSP 11 Score: 65.6747 bits (137), Expect = 1.06379e-12 Query: 3 LXLCISPTTHSIISLERSATCQYQLCF 83 HSP 12 Score: 23.5196 bits (45), Expect = 1.06379e-12 Query: 240 PTPSYVSNPHFPLQLFLPWKPPKPEY 317 | ||||
WO454_contig15357_v2 | 4.49306e-15 | 96.43% | ||
WO454_contig15357_v2 | ||||
HSP 1 Score: 72.0897 bits (151), Expect = 4.49306e-15 Query: 1 PXFMHLPHHPLNNKLGTFSHVPIPIMF* 84 HSP 2 Score: 23.5196 bits (45), Expect = 4.49306e-15 Query: 240 PTPSYVSNPHFPLQLFLPWKPPKPEY 317 HSP 3 Score: 74.3807 bits (156), Expect = 1.34844e-14 Query: 1 LKHNWYWHVAERSKLIIEWVVGEMHKXR 84 HSP 4 Score: 72.0897 bits (151), Expect = 6.59941e-14 Query: 2 *NIIGIGTWLNVPSLLLSGWWGRCINXG 85 HSP 5 Score: 65.6747 bits (137), Expect = 5.63103e-12 Query: 3 LXLCISPTTHSIISLERSATCQYQLCF 83 | ||||
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