RO454_contig17798_v2

NameRO454_contig17798_v2
AccessionID3146635
Sequence
CTCTCTCTCTATATCTCTCGGCGTAATTCTCAGGCAATCTCCGATTCTCT
CACACAATGGCCACCGATTCATCAGAGCAACTCAACCTCAACAACCCTAC
TACTACTACTACTGCTGCTGTAGAAGAAAACCCTaAAAAACTGAGACACG
GAACAGGGGATAGGCAAGGCACACAGGGGATAG
Length183
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
microsatellite RO454_contig17798_v2-ssr1 0 10 0
EST ROB_050864_3934_1308 0-183
EST ROB_159426_4003_2069 0-183
microsatellite RO454_contig17798_v2-ssr97 96 111 0

InterProScan Analysis

Analysis Date: 11-19-2009 (Interpro: RO454_contigs_v2)
SEQUENCE: RO454_contig17798_v2_3_ORF2 CRC64: 94D00F6671E9D360 LENGTH: 52 aa
noIPR
unintegrated
unintegrated
seg [25-31]? NA seg seg seg
SEQUENCE: RO454_contig17798_v2_3_ORF2 CRC64: 94D00F6671E9D360 LENGTH: 52 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [25-31]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig21122_v27.56743e-1776.00%
AC454_contig21122_v2
HSP 1 
Score: 80.7956 bits (170), Expect = 7.56743e-17
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:    1 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE 150
            R+   *GFL QQQ ****GC*G*VALMNRWPLCERIGD +RIT R+  RE
Sbjct:   34 RLGFV*GFLPQQQQ****GC*G*VALMNRWPLCERIGDXVRITARETNRE 183

HSP 2 
Score: 67.0494 bits (140), Expect = 1.03988e-12
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 3
Query:   15 LSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            LS *FS  LRFSHTMATDSSEQLNLNNP        EENPK+
Sbjct:   48 LSP*FSRXLRFSHTMATDSSEQLNLNNPTTTTAAAAEENPKQ 173

HSP 3 
Score: 65.2165 bits (136), Expect = 3.70443e-12
Identity = 32/45 (71.11%), Postives = 32/45 (71.11%), Query Frame = -3
Query:    2 LGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 136
            LGFSS       VGLLRLSCSDESVAIV*ENRR  ENY ER   R
Sbjct:   35 LGFSSAAAAVVVVGLLRLSCSDESVAIV*ENRRXRENYGERDEXR 169

HSP 4 
Score: 63.3837 bits (132), Expect = 1.31965e-11
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90
            LS  +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   34 LSXRLSRRNSHAISDSLTQWPPIHQSNSTS 123

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig17348_v22.81849e-1776.00%
CC454_contig17348_v2
HSP 1 
Score: 83.0867 bits (175), Expect = 2.81849e-17
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:    1 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE 150
            R+   *GFL QQQ  ***GC*G*VALMNRWPLCERIGDC+RIT R+  RE
Sbjct: 2109 RLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRE 2258

HSP 2 
Score: 70.2568 bits (147), Expect = 2.05203e-13
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   15 LSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            LS *FS NLRFSHTMATDSSEQLNLNNP   XX   EENPK+
Sbjct: 2119 LSP*FSRNLRFSHTMATDSSEQLNLNNPTTTXXAAAEENPKQ 2244

HSP 3 
Score: 67.0494 bits (140), Expect = 1.8955e-12
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = -3
Query:   14 LGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAER 136
            LGFSS   XX  VGLLRLSCSDESVAIV*ENRRL ENY ER
Sbjct: 2123 LGFSSAAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGER 2245

HSP 4 
Score: 64.7583 bits (135), Expect = 9.27678e-12
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90
            LS+ +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct: 2169 LSIRLSRRNSHAISDSLTQWPPIHQSNSTS 2258

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig42794_v22.92283e-1776.00%
CCall_contig42794_v2
HSP 1 
Score: 83.0867 bits (175), Expect = 2.92283e-17
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:    1 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE 150
            R+   *GFL QQQ  ***GC*G*VALMNRWPLCERIGDC+RIT R+  RE
Sbjct: 2109 RLGFV*GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARETNRE 2258

HSP 2 
Score: 70.2568 bits (147), Expect = 2.12799e-13
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   15 LSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            LS *FS NLRFSHTMATDSSEQLNLNNP   XX   EENPK+
Sbjct: 2119 LSP*FSRNLRFSHTMATDSSEQLNLNNPTTTXXAAAEENPKQ 2244

HSP 3 
Score: 67.0494 bits (140), Expect = 1.96568e-12
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = -3
Query:   14 LGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAER 136
            LGFSS   XX  VGLLRLSCSDESVAIV*ENRRL ENY ER
Sbjct: 2123 LGFSSAAAXXVVVGLLRLSCSDESVAIV*ENRRLRENYGER 2245

HSP 4 
Score: 64.7583 bits (135), Expect = 9.62021e-12
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90
            LS+ +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct: 2169 LSIRLSRRNSHAISDSLTQWPPIHQSNSTS 2258

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig25470_v24.63631e-34100.00%
Oall_contig25470_v2
HSP 1 
Score: 138.53 bits (296), Expect = 4.63631e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -1
Query:    1 LSPVCLAYPLFRVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE 183
            LSPVCLAYPLFRVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE
Sbjct:    1 LSPVCLAYPLFRVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIERE 183

HSP 2 
Score: 123.409 bits (263), Expect = 1.7271e-29
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 3
Query:    3 LSLYLSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKKLRHGTGDRQGTQGI 182
            LSLYLSA*FSGNLRFSHTMATDSSEQLNLNNP       VEENPKKLRHGTGDRQGTQGI
Sbjct:    3 LSLYLSA*FSGNLRFSHTMATDSSEQLNLNNPTTTTTAAVEENPKKLRHGTGDRQGTQGI 182

HSP 3 
Score: 88.127 bits (186), Expect = 9.71973e-24
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = -3
Query:    2 FLGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 139
            FLGFSST      VGLLRLSCSDESVAIV*ENRRLPENYAERYRER
Sbjct:    2 FLGFSSTAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 139

HSP 4 
Score: 31.3091 bits (62), Expect = 9.71973e-24
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -2
Query:  153 YPLCALPIPC 182
            YPLCALPIPC
Sbjct:  153 YPLCALPIPC 182

HSP 5 
Score: 103.248 bits (219), Expect = 2.02505e-23
Identity = 47/60 (78.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 SLSISLGVILRQSPILSHNGHRFIRATXXXXXXXXXXXXXRRKP*KTETRNRG*ARHTGD 181
            SLSISLGVILRQSPILSHNGHRFIRAT             RRKP*KTETRNRG*ARHTGD
Sbjct:    2 SLSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKP*KTETRNRG*ARHTGD 181

HSP 6 
Score: 73.0061 bits (153), Expect = 1.03323e-20
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90
            LSLYISRRNSQAISDSLTQWPPIHQSNSTS
Sbjct:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90

HSP 7 
Score: 36.3494 bits (73), Expect = 1.03323e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 1
Query:  139 N*DTEQGIGKAHRG* 183
            N*DTEQGIGKAHRG*
Sbjct:  139 N*DTEQGIGKAHRG* 183

Oall_contig18166_v22.78208e-23100.00%
Oall_contig18166_v2
HSP 1 
Score: 102.79 bits (218), Expect = 2.78208e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -1
Query:    4 VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIER 141
            VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIER
Sbjct:   41 VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDIER 178

HSP 2 
Score: 84.9195 bits (179), Expect = 6.37545e-18
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    6 SLYLSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            SLYLSA*FSGNLRFSHTMATDSSEQLNLNNP        EENPKK
Sbjct:   43 SLYLSA*FSGNLRFSHTMATDSSEQLNLNNPTTTTTAAAEENPKK 177

HSP 3 
Score: 83.5449 bits (176), Expect = 1.7283e-17
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = -3
Query:    5 FLGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAERYRE 139
            FLGFSS       VGLLRLSCSDESVAIV*ENRRLPENYAERYRE
Sbjct:   42 FLGFSSAAAVVVVVGLLRLSCSDESVAIV*ENRRLPENYAERYRE 176

HSP 4 
Score: 73.0061 bits (153), Expect = 2.45928e-14
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 90
            LSLYISRRNSQAISDSLTQWPPIHQSNSTS
Sbjct:   38 LSLYISRRNSQAISDSLTQWPPIHQSNSTS 127

HSP 5 
Score: 70.715 bits (148), Expect = 1.2036e-13
Identity = 33/46 (71.74%), Postives = 33/46 (71.74%), Query Frame = 2
Query:    5 LSISLGVILRQSPILSHNGHRFIRATXXXXXXXXXXXXXRRKP*KT 142
            LSISLGVILRQSPILSHNGHRFIRAT             RRKP*KT
Sbjct:   42 LSISLGVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKP*KT 179

Oall_contig18167_v23.12021e-1782.61%
Oall_contig18167_v2
HSP 1 
Score: 82.6285 bits (174), Expect = 3.12021e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -1
Query:   13 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 150
            R+  F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   76 RLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 213

HSP 2 
Score: 70.715 bits (148), Expect = 1.25831e-13
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 3
Query:    3 LSLYLSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            L + LS *FS +LRFSHTMATDSSEQLNLNNP        EENPKK
Sbjct:   66 LLISLSP*FSRDLRFSHTMATDSSEQLNLNNPTTTTTASAEENPKK 203

HSP 3 
Score: 67.9658 bits (142), Expect = 8.0926e-13
Identity = 33/46 (71.74%), Postives = 33/46 (71.74%), Query Frame = -3
Query:    2 FLGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 139
            FLGFSS       VGLLRLSCSDESVAIV*ENRR  ENY ER   R
Sbjct:   65 FLGFSSAEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSR 202

HSP 4 
Score: 61.0927 bits (127), Expect = 9.9177e-11
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   13 ISRRNSQAISDSLTQWPPIHQSNSTS 90
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   76 LSRRNSHAISDSLTQWPPIHQSNSTS 153

Blast Hits to Contigs V2 WO454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig9341_v21.52794e-1782.61%
WO454_contig9341_v2
HSP 1 
Score: 82.6285 bits (174), Expect = 1.52794e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -1
Query:   13 RVSVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 150
            R+  F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   27 RLGFF*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 164

HSP 2 
Score: 70.715 bits (148), Expect = 6.1395e-14
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 3
Query:    3 LSLYLSA*FSGNLRFSHTMATDSSEQLNLNNPXXXXXXXVEENPKK 140
            L + LS *FS +LRFSHTMATDSSEQLNLNNP        EENPKK
Sbjct:   17 LLISLSP*FSRDLRFSHTMATDSSEQLNLNNPTTTTTASAEENPKK 154

HSP 3 
Score: 67.9658 bits (142), Expect = 3.96289e-13
Identity = 33/46 (71.74%), Postives = 33/46 (71.74%), Query Frame = -3
Query:    2 FLGFSSTXXXXXXVGLLRLSCSDESVAIV*ENRRLPENYAERYRER 139
            FLGFSS       VGLLRLSCSDESVAIV*ENRR  ENY ER   R
Sbjct:   16 FLGFSSAEAVVVVVGLLRLSCSDESVAIV*ENRRSRENYGEREMSR 153

HSP 4 
Score: 61.0927 bits (127), Expect = 4.83903e-11
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1
Query:   13 ISRRNSQAISDSLTQWPPIHQSNSTS 90
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   27 LSRRNSHAISDSLTQWPPIHQSNSTS 104

tags