RO454_contig12363_v2

NameRO454_contig12363_v2
AccessionID3110780
Sequence
TGTCCACTCTCTCTCTACTCTCCTCCTCTCTCTCTCTCTMTCTCTCTATA
TCTCTCGGCGTAATTCTCAGGCAATCTCCGATTCTCTCACACAATGGCCA
CCGATTCATCAGAGCAACTCAACCTCAACAACCCTACTACTACTACTACT
GCTGCTGCAGAAGAAAACCCTAAAAAACCCTAGACGACGACAGTACCACT
ACTGCTGCTGTCCCGCCCACCACCACCGAGCCAGATCACCTCGAAGAAGA
AGAAGAAGAAGAGGAAGaAGCMAGCYGGTTTGCCAAAATGGCATTTTACA
GAGACTCCAAACTTTGCCTTCAGCACCTGTTTTCTCACTAGCGACCGCCA
TTATTTTCTTCACCGGAAAATCCGACCCAAAACCACAAACTGGGTCTGGG
TCTGGGTCTGGGTCTCTTGCCAAAAGCGTGGTTTCTG
Length437
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ROB_015647_3324_0397 0-215
microsatellite RO454_contig12363_v2-ssr7 6 16 0
microsatellite RO454_contig12363_v2-ssr26 25 39 0
EST ROA_015597_2797_2139 28-277
microsatellite RO454_contig12363_v2-ssr134 133 148 0
EST ROA_021712_0891_0654 232-437
microsatellite RO454_contig12363_v2-ssr243 242 260 0

GO terms assigned to this feature

Accession Category Term
GO:0015986 biological_process ATP synthesis coupled proton transport

InterProScan Analysis

Analysis Date: 11-19-2009 (Interpro: RO454_contigs_v2)
SEQUENCE: RO454_contig12363_v2_1_ORF2 CRC64: 8030DE6C7923956F LENGTH: 84 aa
noIPR
unintegrated
unintegrated
seg [5-16]? NA seg seg[21-30]? NA seg seg[70-77]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_2_ORF1 CRC64: ED0ECDDBE8CB7FF5 LENGTH: 145 aa
InterPro
IPR020003
Active_site
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site
PS00152 [33-42]? NA PS00152 ATPASE_ALPHA_BETA ATPASE_ALPHA_BETA
noIPR
unintegrated
unintegrated
seg [3-15]? NA seg seg[43-58]? NA seg seg[71-90]? NA seg seg[131-138]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_3_ORF1 CRC64: 56EB2E9EC009B0EB LENGTH: 56 aa
noIPR
unintegrated
unintegrated
seg [3-18]? NA seg seg[40-52]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_3_ORF2 CRC64: D9808D3BEDABD023 LENGTH: 55 aa
noIPR
unintegrated
unintegrated
seg [8-18]? NA seg seg[24-32]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_4_ORF1 CRC64: A6534F94615681FB LENGTH: 78 aa
noIPR
unintegrated
unintegrated
seg [8-15]? NA seg seg[54-64]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_6_ORF2 CRC64: 69FD73E73B64AA2A LENGTH: 56 aa
noIPR
unintegrated
unintegrated
seg [27-36]? NA seg seg[42-52]? NA seg seg seg
SEQUENCE: RO454_contig12363_v2_1_ORF2 CRC64: 8030DE6C7923956F LENGTH: 84 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [5-16]?   NA [21-30]?   NA [70-77]?   
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: RO454_contig12363_v2_2_ORF1 CRC64: ED0ECDDBE8CB7FF5 LENGTH: 145 aa
InterPro
IPR020003
Active_site
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site
PROSITEPS00152ATPASE_ALPHA_BETA
 NA [33-42]?       
Parent no parent
Children no children
Found in IPR000194 IPR005294 IPR005714 IPR005722 IPR005723 IPR005724 IPR005725 IPR005726 IPR013380 IPR017458 IPR017691 IPR017710 IPR020005
Contains no entries
GO terms Biological Process: ATP synthesis coupled proton transport (GO:0015986)
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [3-15]?   NA [43-58]?   NA [71-90]?   NA [131-138]? 
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: RO454_contig12363_v2_3_ORF1 CRC64: 56EB2E9EC009B0EB LENGTH: 56 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [3-18]?   NA [40-52]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: RO454_contig12363_v2_3_ORF2 CRC64: D9808D3BEDABD023 LENGTH: 55 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [8-18]?   NA [24-32]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: RO454_contig12363_v2_4_ORF1 CRC64: A6534F94615681FB LENGTH: 78 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [8-15]?   NA [54-64]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: RO454_contig12363_v2_6_ORF2 CRC64: 69FD73E73B64AA2A LENGTH: 56 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [27-36]?   NA [42-52]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig21122_v29.65183e-1792.31%
AC454_contig21122_v2
HSP 1 
Score: 61.0927 bits (127), Expect = 9.65183e-17
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2
Query:   50 ISRRNSQAISDSLTQWPPIHQSNSTS 127
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   46 LSRRNSHAISDSLTQWPPIHQSNSTS 123

HSP 2 
Score: 40.4733 bits (82), Expect = 9.65183e-17
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHYCCC
Sbjct:  173 NPRRRQYHYCCC 208

HSP 3 
Score: 74.8389 bits (157), Expect = 2.08076e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = -2
Query:   50 *GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 172
            *GFL QQQ ****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   46 *GFLPQQQQ****GC*G*VALMNRWPLCERIGDXVRITARE 168

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig22594_v21.53855e-2394.12%
CC454_contig22594_v2
HSP 1 
Score: 81.2538 bits (171), Expect = 1.53855e-23
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = -3
Query:  277 GSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQT 378
            G  FPVKKIMAVASEKTGAEGKVWSLCKMPFWQT
Sbjct:   56 GRIFPVKKIMAVASEKTGAEGKVWSLCKMPFWQT 157

HSP 2 
Score: 31.3091 bits (62), Expect = 1.53855e-23
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -2
Query:  368 RPRPSLWFWVGF 403
            RPRPSLWF VGF
Sbjct:   30 RPRPSLWFRVGF 65

HSP 3 
Score: 30.3927 bits (60), Expect = 1.53855e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  404 RNHAFGKRPRP 436
            RNHAFG+RPRP
Sbjct:    9 RNHAFGERPRP 41

HSP 4 
Score: 86.2941 bits (182), Expect = 8.99056e-19
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1
Query:  274 AGLPKWHFTETPNFAFSTCFLTSDRHYFLHRK 369
            AGLPKWHFT+TPNFAFSTCFLTSDRHYFLHRK
Sbjct:   65 AGLPKWHFTKTPNFAFSTCFLTSDRHYFLHRK 160

HSP 5 
Score: 23.0613 bits (44), Expect = 8.99056e-19
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  368 KSDPKPQT 391
            KSDPKPQT
Sbjct:   42 KSDPKPQT 65

HSP 6 
Score: 74.3807 bits (156), Expect = 1.16533e-15
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = -1
Query:  273 FR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPA 368
            FR*RK*WRSLVRKQVLKAKFGV VKCHFGKPA
Sbjct:   66 FR*RK*WRSLVRKQVLKAKFGVFVKCHFGKPA 161

HSP 7 
Score: 24.436 bits (47), Expect = 1.16533e-15
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -3
Query:  367 VCGFGSDF 390
            VCGFGSDF
Sbjct:   43 VCGFGSDF 66

HSP 8 
Score: 75.7553 bits (159), Expect = 2.06245e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 2
Query:  278 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPK 382
            VCQNGILQRLQTLPSAPVFSLATAIIFFTGK  P+
Sbjct:   52 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKIRPE 156

HSP 9 
Score: 74.3807 bits (156), Expect = 5.34795e-14
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 3
Query:  279 FAKMAFYRDSKLCLQHLFSH*RPPLFSSPE 368
            FAKMAFY+DSKLCLQHLFSH*RPPLFSSPE
Sbjct:   66 FAKMAFYKDSKLCLQHLFSH*RPPLFSSPE 155

CC454_contig17348_v21.77229e-1692.31%
CC454_contig17348_v2
HSP 1 
Score: 61.0927 bits (127), Expect = 1.77229e-16
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2
Query:   50 ISRRNSQAISDSLTQWPPIHQSNSTS 127
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct: 2169 LSRRNSHAISDSLTQWPPIHQSNSTS 2246

HSP 2 
Score: 40.4733 bits (82), Expect = 1.77229e-16
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHYCCC
Sbjct: 2084 NPRRRQYHYCCC 2119

HSP 3 
Score: 77.13 bits (162), Expect = 7.9539e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = -2
Query:   50 *GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 172
            *GFL QQQ  ***GC*G*VALMNRWPLCERIGDC+RIT R+
Sbjct: 2124 *GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARE 2246

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig40810_v21.5974e-2394.12%
CCall_contig40810_v2
HSP 1 
Score: 81.2538 bits (171), Expect = 1.5974e-23
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = -3
Query:  277 GSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQT 378
            G  FPVKKIMAVASEKTGAEGKVWSLCKMPFWQT
Sbjct:  967 GRIFPVKKIMAVASEKTGAEGKVWSLCKMPFWQT 1068

HSP 2 
Score: 31.3091 bits (62), Expect = 1.5974e-23
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -2
Query:  368 RPRPSLWFWVGF 403
            RPRPSLWF VGF
Sbjct: 1059 RPRPSLWFRVGF 1094

HSP 3 
Score: 30.3927 bits (60), Expect = 1.5974e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  404 RNHAFGKRPRP 436
            RNHAFG+RPRP
Sbjct: 1083 RNHAFGERPRP 1115

HSP 4 
Score: 86.2941 bits (182), Expect = 9.33444e-19
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1
Query:  274 AGLPKWHFTETPNFAFSTCFLTSDRHYFLHRK 369
            AGLPKWHFT+TPNFAFSTCFLTSDRHYFLHRK
Sbjct:  964 AGLPKWHFTKTPNFAFSTCFLTSDRHYFLHRK 1059

HSP 5 
Score: 23.0613 bits (44), Expect = 9.33444e-19
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  368 KSDPKPQT 391
            KSDPKPQT
Sbjct: 1059 KSDPKPQT 1082

HSP 6 
Score: 74.3807 bits (156), Expect = 1.20991e-15
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = -1
Query:  273 FR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPA 368
            FR*RK*WRSLVRKQVLKAKFGV VKCHFGKPA
Sbjct:  963 FR*RK*WRSLVRKQVLKAKFGVFVKCHFGKPA 1058

HSP 7 
Score: 24.436 bits (47), Expect = 1.20991e-15
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -3
Query:  367 VCGFGSDF 390
            VCGFGSDF
Sbjct: 1058 VCGFGSDF 1081

HSP 8 
Score: 75.7553 bits (159), Expect = 2.14134e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 2
Query:  278 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPK 382
            VCQNGILQRLQTLPSAPVFSLATAIIFFTGK  P+
Sbjct:  968 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKIRPE 1072

HSP 9 
Score: 74.3807 bits (156), Expect = 5.5525e-14
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 3
Query:  279 FAKMAFYRDSKLCLQHLFSH*RPPLFSSPE 368
            FAKMAFY+DSKLCLQHLFSH*RPPLFSSPE
Sbjct:  969 FAKMAFYKDSKLCLQHLFSH*RPPLFSSPE 1058

CCall_contig42794_v21.84007e-1692.31%
CCall_contig42794_v2
HSP 1 
Score: 61.0927 bits (127), Expect = 1.84007e-16
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2
Query:   50 ISRRNSQAISDSLTQWPPIHQSNSTS 127
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct: 2169 LSRRNSHAISDSLTQWPPIHQSNSTS 2246

HSP 2 
Score: 40.4733 bits (82), Expect = 1.84007e-16
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHYCCC
Sbjct: 2084 NPRRRQYHYCCC 2119

HSP 3 
Score: 77.13 bits (162), Expect = 8.25813e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = -2
Query:   50 *GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 172
            *GFL QQQ  ***GC*G*VALMNRWPLCERIGDC+RIT R+
Sbjct: 2124 *GFLPQQQXX***GC*G*VALMNRWPLCERIGDCVRITARE 2246

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig18166_v26.63853e-5572.09%
Oall_contig18166_v2
HSP 1 
Score: 129.366 bits (276), Expect = 6.63853e-55
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = -3
Query:  178 ETTLLARXXXXXXXPVCGFGSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQTXXXXXXXXXXLRGDLARXXXXXXXXXWYCRRLG 435
            ETTLLAR       PVCGFGSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQTXX        LRGDLAR         WYCRRLG
Sbjct:  178 ETTLLARDPDPDPDPVCGFGSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQTXXLLPLLLLLLRGDLARWWWAGQQQ*WYCRRLG 435

HSP 2 
Score: 100.499 bits (213), Expect = 6.63853e-55
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -2
Query:   47 RVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI 181
            RVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI
Sbjct:   47 RVF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI 181

HSP 3 
Score: 123.409 bits (263), Expect = 4.45325e-50
Identity = 51/68 (75.00%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  232 QITSXXXXXXXXXXAGLPKWHFTETPNFAFSTCFLTSDRHYFLHRKIRPKTTNXXXXXXXXSCQKRGF 435
            QITS         XAGLPKWHFTETPNFAFSTCFLTSDRHYFLHRKIRPKTTN        SCQKRGF
Sbjct:  232 QITSKKKKKKRKKXAGLPKWHFTETPNFAFSTCFLTSDRHYFLHRKIRPKTTNWVWVWVWVSCQKRGF 435

HSP 4 
Score: 67.5076 bits (141), Expect = 4.45325e-50
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2
Query:   47 YISRRNSQAISDSLTQWPPIHQSNSTS 127
            YISRRNSQAISDSLTQWPPIHQSNSTS
Sbjct:   47 YISRRNSQAISDSLTQWPPIHQSNSTS 127

HSP 5 
Score: 40.4733 bits (82), Expect = 4.45325e-50
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHYCCC
Sbjct:  176 NPRRRQYHYCCC 211

HSP 6 
Score: 185.725 bits (399), Expect = 1.32897e-47
Identity = 84/127 (66.14%), Postives = 84/127 (66.14%), Query Frame = 3
Query:   57 GVILRQSPILSHNGHRFIRATXXXXXXXXXXXXXRRKP*KTLDDDSXXXXXXXXXXXEPDHLXXXXXXXXXASXFAKMAFYRDSKLCLQHLFSH*RPPLFSSPENPTQNHKXXXXXXXXXXPKAWFL 437
            GVILRQSPILSHNGHRFIRAT             RRKP*KTLDDDS           EPDHL         ASXFAKMAFYRDSKLCLQHLFSH*RPPLFSSPENPTQNHK          PKAWFL
Sbjct:   57 GVILRQSPILSHNGHRFIRATQPQQPYYYYYCCCRRKP*KTLDDDSTTTAAVPPTTTEPDHLEEEEEEEEEASXFAKMAFYRDSKLCLQHLFSH*RPPLFSSPENPTQNHKLGLGLGLGLLPKAWFL 437

HSP 7 
Score: 119.285 bits (254), Expect = 5.42684e-40
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  228 QKPRFWQEXXXXXXXQFVVLGRIFR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPAXXXXXXXXXFEVIWL 437
            QKPRFWQE       QFVVLGRIFR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPAX        FEVIWL
Sbjct:  228 QKPRFWQETQTQTQTQFVVLGRIFR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPAXFFLFFFFFFEVIWL 437

HSP 8 
Score: 60.6344 bits (126), Expect = 5.42684e-40
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1
Query:   57 GLLRLSCSDESVAIV*ENRRLPENYA 134
            GLLRLSCSDESVAIV*ENRRLPENYA
Sbjct:   57 GLLRLSCSDESVAIV*ENRRLPENYA 134

HSP 9 
Score: 101.415 bits (215), Expect = 2.47738e-32
Identity = 45/53 (84.91%), Postives = 45/53 (84.91%), Query Frame = 2
Query:  278 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPKPQTXXXXXXXXLAKSVVS 436
            VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPKPQT        LAKSVVS
Sbjct:  278 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPKPQTGSGSGSGSLAKSVVS 436

HSP 10 
Score: 47.3464 bits (97), Expect = 2.47738e-32
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1
Query:   58 A*FSGNLRFSHTMATDSSEQ 117
            A*FSGNLRFSHTMATDSSEQ
Sbjct:   58 A*FSGNLRFSHTMATDSSEQ 117

HSP 11 
Score: 22.6031 bits (43), Expect = 2.47738e-32
Identity = 5/6 (83.33%), Postives = 6/6 (100.00%), Query Frame = 2
Query:  194 YHYCCC 211
            Y+YCCC
Sbjct:  141 YYYCCC 158

HSP 12 
Score: 68.8822 bits (144), Expect = 4.15383e-20
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = -2
Query:  365 RNHAFGKRPRPRPRPSLWFWVGFS 436
            RNHAFGKRPRPRPRPSLWFWVGFS
Sbjct:  365 RNHAFGKRPRPRPRPSLWFWVGFS 436

HSP 13 
Score: 36.3494 bits (73), Expect = 4.15383e-20
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -2
Query:  272 C*RQSLESL*NAILANXL 325
            C*RQSLESL*NAILANXL
Sbjct:  272 C*RQSLESL*NAILANXL 325

HSP 14 
Score: 24.436 bits (47), Expect = 4.15383e-20
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = -3
Query:   88 LL**IGGHCV 117
            LL**IGGHCV
Sbjct:   88 LL**IGGHCV 117

Oall_contig16165_v24.35116e-2291.18%
Oall_contig16165_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 4.35116e-22
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = -3
Query:  277 GSDFPVKKIMAVASEKTGAEGKVWSLCKMPFWQT 378
            G  FP KKIMAVASEKTGAEGKVWSLCKMPFWQT
Sbjct:  135 GRTFPAKKIMAVASEKTGAEGKVWSLCKMPFWQT 236

HSP 2 
Score: 38.6404 bits (78), Expect = 4.35116e-22
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = -2
Query:  371 RPRPRPRPSLWFWVG 415
            R R RPRPSLWFWVG
Sbjct:  230 RTRXRPRPSLWFWVG 274

HSP 3 
Score: 84.4613 bits (178), Expect = 1.07284e-18
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1
Query:  274 AGLPKWHFTETPNFAFSTCFLTSDRHYFLHRK 369
            AGLPKWHFTETPNFAFSTCFLTSDRHYFL RK
Sbjct:  132 AGLPKWHFTETPNFAFSTCFLTSDRHYFLRRK 227

HSP 4 
Score: 23.0613 bits (44), Expect = 1.07284e-18
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  368 KSDPKPQT 391
            KSDPKPQT
Sbjct:  227 KSDPKPQT 250

HSP 5 
Score: 75.7553 bits (159), Expect = 1.57433e-16
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -1
Query:  273 IFR*RK*WRSLVRKQVLKAKFGVSVKCHFGKPA 371
            +FR RK*WRSLVRKQVLKAKFGVSVKCHFGKPA
Sbjct:  131 LFRRRK*WRSLVRKQVLKAKFGVSVKCHFGKPA 229

HSP 6 
Score: 24.436 bits (47), Expect = 1.57433e-16
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -3
Query:  367 VCGFGSDF 390
            VCGFGSDF
Sbjct:  226 VCGFGSDF 249

HSP 7 
Score: 75.7553 bits (159), Expect = 5.47166e-16
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3
Query:  279 FAKMAFYRDSKLCLQHLFSH*RPPLFSSPE 368
            FAKMAFYRDSKLCLQHLFSH*RPPLFSSPE
Sbjct:  137 FAKMAFYRDSKLCLQHLFSH*RPPLFSSPE 226

HSP 8 
Score: 22.6031 bits (43), Expect = 5.47166e-16
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  355 FLHRKIRPKTTN 390
            F   K+RPKTTN
Sbjct:  214 FFAGKVRPKTTN 249

HSP 9 
Score: 75.2971 bits (158), Expect = 2.32132e-14
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 2
Query:  278 VCQNGILQRLQTLPSAPVFSLATAIIFFTGKSDPK 382
            VCQNGILQRLQTLPSAPVFSLATAIIFF GK  PK
Sbjct:  136 VCQNGILQRLQTLPSAPVFSLATAIIFFAGKVRPK 240

Oall_contig25470_v22.94448e-21100.00%
Oall_contig25470_v2
HSP 1 
Score: 98.2075 bits (208), Expect = 2.94448e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -2
Query:   47 VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI 178
            VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI
Sbjct:   10 VF*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRDI 141

HSP 2 
Score: 67.5076 bits (141), Expect = 9.28008e-14
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2
Query:   47 YISRRNSQAISDSLTQWPPIHQSNSTS 127
            YISRRNSQAISDSLTQWPPIHQSNSTS
Sbjct:   10 YISRRNSQAISDSLTQWPPIHQSNSTS 90

HSP 3 
Score: 22.6031 bits (43), Expect = 9.28008e-14
Identity = 5/6 (83.33%), Postives = 6/6 (100.00%), Query Frame = 2
Query:  194 YHYCCC 211
            Y+YCCC
Sbjct:  104 YYYCCC 121

Oall_contig18167_v27.05431e-1688.10%
Oall_contig18167_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 7.05431e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2
Query:   50 F*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 175
            F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   76 F*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 201

HSP 2 
Score: 61.0927 bits (127), Expect = 4.49329e-15
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2
Query:   50 ISRRNSQAISDSLTQWPPIHQSNSTS 127
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   76 LSRRNSHAISDSLTQWPPIHQSNSTS 153

HSP 3 
Score: 35.433 bits (71), Expect = 4.49329e-15
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHY CC
Sbjct:  203 NPRRRQYHYYCC 238

Blast Hits to Contigs V2 WO454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig9341_v23.21071e-1688.10%
WO454_contig9341_v2
HSP 1 
Score: 80.3374 bits (169), Expect = 3.21071e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2
Query:   50 F*GFLLQQQ*****GC*G*VALMNRWPLCERIGDCLRITPRD 175
            F*GFLLQ+Q*****GC*G*VALMNRWPLCERIGD +RIT R+
Sbjct:   27 F*GFLLQKQ*****GC*G*VALMNRWPLCERIGDRVRITARE 152

HSP 2 
Score: 61.0927 bits (127), Expect = 1.67053e-15
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2
Query:   50 ISRRNSQAISDSLTQWPPIHQSNSTS 127
            +SRRNS AISDSLTQWPPIHQSNSTS
Sbjct:   27 LSRRNSHAISDSLTQWPPIHQSNSTS 104

HSP 3 
Score: 35.433 bits (71), Expect = 1.67053e-15
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  176 NPRRRQYHYCCC 211
            NPRRRQYHY CC
Sbjct:  154 NPRRRQYHYYCC 189

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