RO454_contig11576_v2

NameRO454_contig11576_v2
AccessionID3105377
Sequence
GGGAAGAAAGTTCTTAACTKATCAAGTAGGAAATAGTAATCAATATGTAA
AAGTTTAACAATCTAGATAAGAAGGCTTCAGAAATGTGAAGACTTATTTG
TGTAAGACAAAGGCTTTGCTTCTTCTATCCTAATTGTTAAAATGTTGACA
ATKWTAAKATTTGGTCTCTAAAAAAAAAAAACTAAGAGACACGCAACAGG
Length200
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ROA_021899_2744_0266 0-177
EST ROA_125091_0920_2828 4-200

Blast Hits to Contigs V2 AC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig1205_v24.31353e-1589.19%
AC454_contig1205_v2
HSP 1 
Score: 75.2971 bits (158), Expect = 4.31353e-15
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = -1
Query:    3 PLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF 113
            PLSYTNKSS F*SLL *IVKLLHIDYYFLLD L+TFF
Sbjct:  229 PLSYTNKSSQF*SLLN*IVKLLHIDYYFLLDKLKTFF 339

HSP 2 
Score: 74.8389 bits (157), Expect = 5.92607e-15
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 2
Query:    2 GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTK 112
            GRKFLT  VGNSNQYVKV*QS *EGFR VKTYLCKTK
Sbjct:  228 GRKFLTYLVGNSNQYVKV*QSS*EGFRIVKTYLCKTK 338

HSP 3 
Score: 73.0061 bits (153), Expect = 2.11108e-14
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = -3
Query:    1 FVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP 111
            FVLHK*VFT LKPS LDC*TFTY*LLFPT  VKNFLP
Sbjct:  227 FVLHK*VFTILKPS*LDC*TFTY*LLFPTR*VKNFLP 337

HSP 4 
Score: 72.5479 bits (152), Expect = 2.90028e-14
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DK 111
            GKKV N SSRK**SICKSLTI*+RRLQ CEDLFV*DK
Sbjct:  227 GKKVFNLSSRK**SICKSLTI*LRRLQNCEDLFV*DK 337

HSP 5 
Score: 66.1329 bits (138), Expect = 2.4747e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQR 113
            EES *LI *EIVINM*KFNNL KKASE+*RLICVRQR
Sbjct:  229 EESF*LI**EIVINM*KFNNLVKKASEL*RLICVRQR 339

Blast Hits to Contigs V2 CC454

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig1853_v29.63394e-2690.74%
CC454_contig1853_v2
HSP 1 
Score: 111.496 bits (237), Expect = 9.63394e-26
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQRLCFFYPNC*NVDNXXIW 164
            EES *LIK*EIVINM*KFNNL KKASE+*RLICVRQRLCFFYPNC*NVDN  IW
Sbjct:    3 EESF*LIK*EIVINM*KFNNLVKKASEL*RLICVRQRLCFFYPNC*NVDNVKIW 164

HSP 2 
Score: 109.205 bits (232), Expect = 4.71495e-25
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = -3
Query:    1 TKXXXCQHFNN*DRRSKAFVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP 165
            TK   CQHFNN*DRRSKAFVLHK*VFT LKPS LDC*TFTY*LLFPT* VKNFLP
Sbjct:    2 TKS*HCQHFNN*DRRSKAFVLHK*VFTILKPS*LDC*TFTY*LLFPT**VKNFLP 166

HSP 3 
Score: 107.372 bits (228), Expect = 1.67963e-24
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = -1
Query:    3 PNXXIVNILTIRIEEAKPLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF 164
            PN  IVNILTIRIEEAKPLSYTNKSS F*SLL *IVKLLHIDYYFLLD L+TFF
Sbjct:    3 PNLNIVNILTIRIEEAKPLSYTNKSSQF*SLLN*IVKLLHIDYYFLLDKLKTFF 164

HSP 4 
Score: 103.706 bits (220), Expect = 2.13153e-23
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DKGFASSILIVKMLTXXXFG 165
            GKKV N SSRK**SICKSLTI*+RRLQ CEDLFV*DKGFASSILIVKMLT   FG
Sbjct:    2 GKKVFNLSSRK**SICKSLTI*LRRLQNCEDLFV*DKGFASSILIVKMLTMLRFG 166

HSP 5 
Score: 87.2105 bits (184), Expect = 1.9694e-18
Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTKAXXXXXXXXKC*QX*XLV 166
            GRKFLT QVGNSNQYVKV*QS *EGFR VKTYLCKTKA        KC*Q * LV
Sbjct:    1 GRKFLTYQVGNSNQYVKV*QSS*EGFRIVKTYLCKTKALLLLS*LLKC*QC*DLV 165

HSP 6 
Score: 82.1702 bits (173), Expect = 6.48057e-17
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = -2
Query:   47 DQILXLSTF*QLG*KKQSLCLTQISLHISEAFLSRLLNFY 166
            DQIL LSTF*QLG*KKQSLCLTQISLH SEAFL+RLLNFY
Sbjct:    1 DQILTLSTF*QLG*KKQSLCLTQISLHNSEAFLTRLLNFY 120

Blast Hits to Contigs V2 CCall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig7005_v21.74232e-2494.00%
CCall_contig7005_v2
HSP 1 
Score: 107.372 bits (228), Expect = 1.74232e-24
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = -3
Query:    1 CQHFNN*DRRSKAFVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP 150
            CQHFNN*DRRSKAFVLHK*VFT LKPS LDC*TFTY*LLFPT* VKNFLP
Sbjct: 1402 CQHFNN*DRRSKAFVLHK*VFTILKPS*LDC*TFTY*LLFPT**VKNFLP 1551

HSP 2 
Score: 105.539 bits (224), Expect = 6.20677e-24
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 3
Query:    3 EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQRLCFFYPNC*NVDN 152
            EES *LIK*EIVINM*KFNNL KKASE+*RLICVRQRLCFFYPNC*NVDN
Sbjct: 1404 EESF*LIK*EIVINM*KFNNLVKKASEL*RLICVRQRLCFFYPNC*NVDN 1553

HSP 3 
Score: 102.331 bits (217), Expect = 5.73334e-23
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:    3 IVNILTIRIEEAKPLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF 152
            IVNILTIRIEEAKPLSYTNKSS F*SLL *IVKLLHIDYYFLLD L+TFF
Sbjct: 1404 IVNILTIRIEEAKPLSYTNKSSQF*SLLN*IVKLLHIDYYFLLDKLKTFF 1553

HSP 4 
Score: 99.5822 bits (211), Expect = 3.85491e-22
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DKGFASSILIVKMLT 150
            GKKV N SSRK**SICKSLTI*+RRLQ CEDLFV*DKGFASSILIVKMLT
Sbjct: 1402 GKKVFNLSSRK**SICKSLTI*LRRLQNCEDLFV*DKGFASSILIVKMLT 1551

HSP 5 
Score: 84.0031 bits (177), Expect = 1.88707e-17
Identity = 39/50 (78.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTKAXXXXXXXXKC*Q 151
            GRKFLT QVGNSNQYVKV*QS *EGFR VKTYLCKTKA        KC*Q
Sbjct: 1403 GRKFLTYQVGNSNQYVKV*QSS*EGFRIVKTYLCKTKALLLLS*LLKC*Q 1552

HSP 6 
Score: 73.9225 bits (155), Expect = 2.04337e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -2
Query:   47 LSTF*QLG*KKQSLCLTQISLHISEAFLSRLLNFY 151
            LSTF*QLG*KKQSLCLTQISLH SEAFL+RLLNFY
Sbjct: 1448 LSTF*QLG*KKQSLCLTQISLHNSEAFLTRLLNFY 1552

CCall_contig26073_v28.39217e-1771.88%
CCall_contig26073_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 8.39217e-17
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 3
Query:   69 KKASEM*RLICVRQRLCFFYPNC*NVDNXXIW 164
            ++  ++* LICVRQRLCFFYPNC*NVDN  IW
Sbjct:   50 RRLQKL*XLICVRQRLCFFYPNC*NVDNVKIW 145

HSP 2 
Score: 33.1419 bits (66), Expect = 8.39217e-17
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2
Query:   35 SNQYVKV*QSR*EGFRN 85
            +N+YVKV*QS *EGFRN
Sbjct:   15 NNKYVKV*QSS*EGFRN 65

HSP 3 
Score: 56.5106 bits (117), Expect = 4.81252e-15
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3
Query:   85 TKXXXCQHFNN*DRRSKAFVLHK*VFT 165
            TK   CQHFNN*DRRSKAFVLHK*VFT
Sbjct:   66 TKS*HCQHFNN*DRRSKAFVLHK*VFT 146

HSP 4 
Score: 34.0583 bits (68), Expect = 4.81252e-15
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -3
Query:   31 FLKPSYLDC*TFTY*LLF 84
            FLKPS LDC*TFTY L +
Sbjct:   11 FLKPS*LDC*TFTYLLFY 64

HSP 5 
Score: 56.5106 bits (117), Expect = 5.79514e-14
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = -1
Query:   81 PNXXIVNILTIRIEEAKPLSYTNKSSHF 164
            PN  IVNILTIRIEEAKPLSYTNK S F
Sbjct:   62 PNLNIVNILTIRIEEAKPLSYTNKXSQF 145

HSP 6 
Score: 30.3927 bits (60), Expect = 5.79514e-14
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = -2
Query:   47 ISEAFLSRLLNFY 85
            ISEAFL+RLLNFY
Sbjct:   27 ISEAFLTRLLNFY 65

HSP 7 
Score: 55.5941 bits (115), Expect = 1.07906e-13
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = -2
Query:   86 DQILXLSTF*QLG*KKQSLCLTQISLH 166
            DQIL LSTF*QLG*KKQSLCLTQIS H
Sbjct:   67 DQILTLSTF*QLG*KKQSLCLTQISXH 147

HSP 8 
Score: 30.3927 bits (60), Expect = 1.07906e-13
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:   27 HF*SLLI*IVKLLHIDYYFL 86
            +F*SLL *IVKLLHI Y+ L
Sbjct:    7 NF*SLLN*IVKLLHICYFTL 66

HSP 9 
Score: 52.3867 bits (108), Expect = 2.00884e-13
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   79 QKCEDLFV*DKGFASSILIVKMLTXXXFG 165
            + CE LFV*DKGFASSILIVKMLT   FG
Sbjct:   60 RNCEXLFV*DKGFASSILIVKMLTMLRFG 146

HSP 10 
Score: 32.6837 bits (65), Expect = 2.00884e-13
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3
Query:   24 K*EIVINM*KFNNLDKKASEM 86
            K*  + NM*KFNNL KKASE+
Sbjct:    4 K*SKITNM*KFNNLVKKASEI 66

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig17079_v21.02853e-36100.00%
Oall_contig17079_v2
HSP 1 
Score: 147.694 bits (316), Expect = 1.02853e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = -3
Query:    1 CCVSLSFFFLETKXXXCQHFNN*DRRSKAFVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP 198
            CCVSLSFFFLETKXXXCQHFNN*DRRSKAFVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP
Sbjct:    1 CCVSLSFFFLETKXXXCQHFNN*DRRSKAFVLHK*VFTFLKPSYLDC*TFTY*LLFPT*XVKNFLP 198

HSP 2 
Score: 145.403 bits (311), Expect = 5.03373e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3
Query:    3 EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQRLCFFYPNC*NVDNXXIWSLKKKN*ETRNR 200
            EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQRLCFFYPNC*NVDNXXIWSLKKKN*ETRNR
Sbjct:    3 EESS*LIK*EIVINM*KFNNLDKKASEM*RLICVRQRLCFFYPNC*NVDNXXIWSLKKKN*ETRNR 200

HSP 3 
Score: 143.112 bits (306), Expect = 2.46356e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = -1
Query:    3 PVACLLVFFF*RPNXXIVNILTIRIEEAKPLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF 200
            PVACLLVFFF*RPNXXIVNILTIRIEEAKPLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF
Sbjct:    3 PVACLLVFFF*RPNXXIVNILTIRIEEAKPLSYTNKSSHF*SLLI*IVKLLHIDYYFLLDXLRTFF 200

HSP 4 
Score: 132.573 bits (283), Expect = 3.66485e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
Query:    1 GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DKGFASSILIVKMLTXXXFGL*KKKTKRHAT 198
            GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DKGFASSILIVKMLTXXXFGL*KKKTKRHAT
Sbjct:    1 GKKVLNXSSRK**SICKSLTI*IRRLQKCEDLFV*DKGFASSILIVKMLTXXXFGL*KKKTKRHAT 198

HSP 5 
Score: 118.827 bits (253), Expect = 5.03608e-28
Identity = 58/66 (87.88%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTKAXXXXXXXXKC*QX*XLVSKKKKLRDTQQ 199
            GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTKA        KC*QX*XLVSKKKKLRDTQQ
Sbjct:    2 GRKFLTXQVGNSNQYVKV*QSR*EGFRNVKTYLCKTKALLLLS*LLKC*QX*XLVSKKKKLRDTQQ 199

HSP 6 
Score: 110.121 bits (234), Expect = 2.10304e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -2
Query:   47 LLRVS*FFFFRDQILXLSTF*QLG*KKQSLCLTQISLHISEAFLSRLLNFY 199
            LLRVS*FFFFRDQILXLSTF*QLG*KKQSLCLTQISLHISEAFLSRLLNFY
Sbjct:   47 LLRVS*FFFFRDQILXLSTF*QLG*KKQSLCLTQISLHISEAFLSRLLNFY 199

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