RO454_contig8516_v2

NameRO454_contig8516_v2
AccessionID3082270
Sequence
CCAAAGAAATTTAAAAGTAAGAAAATTTAAGACAAGAAGGTAAATTTAAG
TACCGTAGTAACCMAAATCATAAAGCCAACACATCATTCTCGATATGTAT
ATGCCATCCATACAGGTCAATCCCGTCAAAGTTAAAACTTCTTTTCAATA
AATGATGCCCTTTATTCTGGTTATATTTGTAACTATCATAACTTGAATAC
CTAKTCAAATTTTCACCAAAATACATTACTTCTCACTTTCTCCATCTCTC
CTAGATCCAAGTTGCTAGTTTATTA
Length275
Typecontig
Organism Red Oak

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ROA_052550_0332_2433 0-275
EST ROA_046651_0470_1633 63-256

InterProScan Analysis

Analysis Date: 11-19-2009 (Interpro: RO454_contigs_v2)
SEQUENCE: RO454_contig8516_v2_5_ORF2 CRC64: 2842DC2BD8BF65F3 LENGTH: 54 aa
No hits reported.
SEQUENCE: RO454_contig8516_v2_5_ORF2 CRC64: 2842DC2BD8BF65F3 LENGTH: 54 aa
No hits reported.

Blast Hits to Contig V2 Oall

Analysis Date: 11-18-2009 (Blast: RO454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig12799_v22.96776e-54100.00%
Oall_contig12799_v2
HSP 1 
Score: 206.803 bits (445), Expect = 2.96776e-54
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = -3
Query:    1 IN*QLGSRRDGESEK*CILVKI*XGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLYDXGYYGT*IYLLVLNFLTFKFLW 273
            IN*QLGSRRDGESEK*CILVKI*XGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLYDXGYYGT*IYLLVLNFLTFKFLW
Sbjct:    1 IN*QLGSRRDGESEK*CILVKI*XGIQVMIVTNITRIKGIIY*KEVLTLTGLTCMDGIYISRMMCWLYDXGYYGT*IYLLVLNFLTFKFLW 273

HSP 2 
Score: 182.976 bits (393), Expect = 4.41594e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:   40 VNLSTVVTXIIKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNTXSNFHQNTLLLTFSISPRSKLLVY 273
            VNLSTVVTXIIKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNTXSNFHQNTLLLTFSISPRSKLLVY
Sbjct:   40 VNLSTVVTXIIKPTHHSRYVYAIHTGQSRQS*NFFSINDALYSGYICNYHNLNTXSNFHQNTLLLTFSISPRSKLLVY 273

HSP 3 
Score: 165.106 bits (354), Expect = 3.69721e-46
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = -2
Query:   80 NKLATWI*ERWRK*EVMYFGENLXRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDV 274
            NKLATWI*ERWRK*EVMYFGENLXRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDV
Sbjct:   80 NKLATWI*ERWRK*EVMYFGENLXRYSSYDSYKYNQNKGHHLLKRSFNFDGIDLYGWHIHIENDV 274

HSP 4 
Score: 32.6837 bits (65), Expect = 3.69721e-46
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:    2 PSCLKFSYF*ISL 40
            PSCLKFSYF*ISL
Sbjct:    2 PSCLKFSYF*ISL 40

HSP 5 
Score: 126.616 bits (270), Expect = 5.80546e-41
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 KEI*K*ENLRQEGKFKYRSNXNHKANTSFSICICHPYRSIPSKLKLLFNK*CP 161
            KEI*K*ENLRQEGKFKYRSNXNHKANTSFSICICHPYRSIPSKLKLLFNK*CP
Sbjct:    3 KEI*K*ENLRQEGKFKYRSNXNHKANTSFSICICHPYRSIPSKLKLLFNK*CP 161

HSP 6 
Score: 53.7613 bits (111), Expect = 5.80546e-41
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 3
Query:  207 KFSPKYITSHFLHLS*IQVASLL 275
            KFSPKYITSHFLHLS*IQVASLL
Sbjct:  207 KFSPKYITSHFLHLS*IQVASLL 275

HSP 7 
Score: 154.567 bits (331), Expect = 1.57385e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 **TSNLDLGEMEKVRSNVFW*KFX*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFMIXVTTV 275
            **TSNLDLGEMEKVRSNVFW*KFX*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFMIXVTTV
Sbjct:   51 **TSNLDLGEMEKVRSNVFW*KFX*VFKL**LQI*PE*RASFIEKKF*L*RD*PVWMAYTYRE*CVGFMIXVTTV 275

HSP 8 
Score: 115.619 bits (246), Expect = 8.34443e-27
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2
Query:    2 QRNLKVRKFKTRR*I*VP**PKS*SQHIILDMYMPSIQVNPVKVKTSFQ*MMP 160
            QRNLKVRKFKTRR*I*VP**PKS*SQHIILDMYMPSIQVNPVKVKTSFQ*MMP
Sbjct:    2 QRNLKVRKFKTRR*I*VP**PKS*SQHIILDMYMPSIQVNPVKVKTSFQ*MMP 160

tags