CC454_contig45004_v2

NameCC454_contig45004_v2
AccessionID2937536
Sequence
TCAACAATCTCGCCCTCAAGCTCAACAATCAGACTCCGATTATCTCGTCC
TCCGAAATCTCCTCCACCACCATATGAGTACAAGTCCCACCACCACCTAC
AGAACCATACAAGTACTCATCCCCACCACCACCACCATACGAGTACAAGT
CCCCACCACCACCTGTRMAMKCTCTWCCWCCACCATAYGAGTACAAGTCC
CCACCACCACCAGAGAAATCTCCTCCTCCACCWTAYKASTACAAGTCCCC
ACCACCACCAGAAGAAAAAGTAAAACTAAAACCTAAAA
Length288
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST CCNHS_417944_3207_3024 0-260
microsatellite CC454_contig45004_v2-ssr123 122 137 0
EST CCCanker_279698_3277_1206 165-288
microsatellite CC454_contig45004_v2-ssr201 200 212 0
microsatellite CC454_contig45004_v2-ssr249 248 260 0

GO terms assigned to this feature

Accession Category Term
GO:0009664 biological_process plant-type cell wall organization
GO:0005199 molecular_function structural constituent of cell wall

InterProScan Analysis

Analysis Date: 02-12-2010 (Interpro: CC454_contigs_v2)
SEQUENCE: CC454_contig45004_v2_1_ORF1 CRC64: 4CF7D6085A1543C2 LENGTH: 90 aa
noIPR
unintegrated
unintegrated
seg [11-24]? NA seg seg[29-86]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_2_ORF1 CRC64: 448A59C86EF16BB0 LENGTH: 94 aa
noIPR
unintegrated
unintegrated
seg [40-94]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_3_ORF2 CRC64: 06291B6E5E86AFC6 LENGTH: 70 aa
InterPro
IPR006706
Repeat
Extensin-like repeat
PF04554 [20-61]T 7.5e-10 PF04554 Extensin_2 Extensin_2
noIPR
unintegrated
unintegrated
PTHR23201 [3-61]T 0.00074 PTHR23201 EXTENSIN, PROLINE-RICH PROTEIN EXTENSIN, PROLINE-RICH PROTEIN
seg [4-64]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_4_ORF2 CRC64: 09B4A00166B863F9 LENGTH: 61 aa
noIPR
unintegrated
unintegrated
seg [1-11]? NA seg seg[15-55]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_5_ORF1 CRC64: E929837C38FD6A51 LENGTH: 85 aa
noIPR
unintegrated
unintegrated
seg [1-67]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_6_ORF2 CRC64: 48ADD4382CC34533 LENGTH: 52 aa
noIPR
unintegrated
unintegrated
seg [3-52]? NA seg seg seg
SEQUENCE: CC454_contig45004_v2_1_ORF1 CRC64: 4CF7D6085A1543C2 LENGTH: 90 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [11-24]?   NA [29-86]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig45004_v2_2_ORF1 CRC64: 448A59C86EF16BB0 LENGTH: 94 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [40-94]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig45004_v2_3_ORF2 CRC64: 06291B6E5E86AFC6 LENGTH: 70 aa
InterPro
IPR006706
Repeat
Extensin-like repeat
PFAMPF04554Extensin_2
 7.5e-10 [20-61]T       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms Molecular Function: structural constituent of cell wall (GO:0005199)
Biological Process: plant-type cell wall organization (GO:0009664)
noIPR
unintegrated
unintegrated
PANTHERPTHR23201EXTENSIN, PROLINE-RICH PROTEIN
 0.00074 [3-61]T       
SEGseg seg
 NA [4-64]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig45004_v2_4_ORF2 CRC64: 09B4A00166B863F9 LENGTH: 61 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [1-11]?   NA [15-55]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig45004_v2_5_ORF1 CRC64: E929837C38FD6A51 LENGTH: 85 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [1-67]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig45004_v2_6_ORF2 CRC64: 48ADD4382CC34533 LENGTH: 52 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [3-52]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

Blast Hits to Contigs V2 CCall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig44285_v21.80656e-20100.00%
CCall_contig44285_v2
HSP 1 
Score: 95.0479 bits (201), Expect = 1.80656e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 QQSRPQAQQSDSDYLVLRNLLHHHMSTSPTTTYRTIQVL 118
            QQSRPQAQQSDSDYLVLRNLLHHHMSTSPTTTYRTIQVL
Sbjct:    2 QQSRPQAQQSDSDYLVLRNLLHHHMSTSPTTTYRTIQVL 118

HSP 2 
Score: 68.8822 bits (144), Expect = 6.55305e-14
Identity = 27/34 (79.41%), Postives = 27/34 (79.41%), Query Frame = -2
Query:    3 FCRWWWDLYSYXXXXXXXGRDNRSLIVELEGEIV 104
            FCRWWWDLYSY       GRDNRSLIVELEGEIV
Sbjct:    3 FCRWWWDLYSYGGGGDFGGRDNRSLIVELEGEIV 104

HSP 3 
Score: 22.6031 bits (43), Expect = 6.55305e-14
Identity = 17/26 (65.38%), Postives = 17/26 (65.38%), Query Frame = -1
Query:  172 GTCXXXXXXXXXXXXVGTCTXMVXXE 249
            GTCXXX         VGTCTXMVXXE
Sbjct:  172 GTCXXXVEEEISLVVVGTCTXMVXXE 249

HSP 4 
Score: 62.9255 bits (131), Expect = 8.44626e-11
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -3
Query:    2 TCTHMVVEEISEDEIIGV*LLSLRARLL 85
            TCTHMVVEEISEDEIIGV*LLSLRARLL
Sbjct:    2 TCTHMVVEEISEDEIIGV*LLSLRARLL 85

tags