CC454_contig40005_v2

NameCC454_contig40005_v2
AccessionID2843621
Sequence
TTTGCTTCCGTATTTGAAACAAATTTGTGAAGAACAAACTAAGGAAATGG
AGATTGAGGCTAATATTCAAGGGAAATCATATTCTGAAATTGAAGTACAA
CAAACCATTTGTTATAATGATGAGCGTATCTTTTGCGATCATTGTGCAAC
TTCAATTGTAGACCTTCATCGAAGCTGCCCAACATGTTCTTATGAACTCT
GTCTCAGTTGCTGTGAAGAAATTCGAAAGGAAAGTCTTACAAGCCGTGGC
AAAATGAAGTTTCAATACATCAACAATGGCTATGATTACATGCATGGTGG
AGATCCTCTACCTGAATCATGTCTTTTAAAAACTTCAAAGGAACATGTTA
AGTCCTTTATCAAATGGAGTGCCAATGGTGATGGAAGTGTTACTTGTGCT
CCAAAGGAAATTGGTGGGTGTGGTGAATGTATATTGGAGCTCAGGCGTAT
CCTTCCACTGGGGTGGA
Length467
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST CCMHS_031752_1825_2382 0-234
EST CCNHS_184818_3039_0265 48-292
EST CCMHS_280346_0297_2354 91-328
EST CCMHS_378195_1783_3641 158-409
EST CCMHS_285205_1811_2074 196-447
EST CCWP2_043323_3396_2882 223-467
EST CCCanker_351441_0204_1024 282-382
point_mutation CC454_contig40005_v2-snp305 304 306 0

InterProScan Analysis

Analysis Date: 02-12-2010 (Interpro: CC454_contigs_v2)
SEQUENCE: CC454_contig40005_v2_2_ORF1 CRC64: 83AA65478266DA6B LENGTH: 155 aa
noIPR
unintegrated
unintegrated
seg [62-73]? NA seg seg seg
SEQUENCE: CC454_contig40005_v2_4_ORF1 CRC64: BE72BE2D0634A3D2 LENGTH: 59 aa
noIPR
unintegrated
unintegrated
seg [9-20]? NA seg seg seg
SEQUENCE: CC454_contig40005_v2_5_ORF2 CRC64: 7C4122836D4AEFC7 LENGTH: 51 aa
No hits reported.
SEQUENCE: CC454_contig40005_v2_2_ORF1 CRC64: 83AA65478266DA6B LENGTH: 155 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [62-73]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig40005_v2_4_ORF1 CRC64: BE72BE2D0634A3D2 LENGTH: 59 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [9-20]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig40005_v2_5_ORF2 CRC64: 7C4122836D4AEFC7 LENGTH: 51 aa
No hits reported.

Blast Hits to Contigs V2 CCall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig39685_v23.47615e-103100.00%
CCall_contig39685_v2
HSP 1 
Score: 370.842 bits (803), Expect = 3.47615e-103
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query:    1 FASVFETNL*RTN*GNGD*G*YSREIIF*N*STTNHLL***AYLLRSLCNFNCRPSSKLPNMFL*TLSQLL*RNSKGKSYKPWQNEVSIHQQWL*LHAWWRSST*IMSFKNFKGTC*VLYQMECQW*WKCYLCSKGNWWVW*MYIGAQAYPSTGV 465
            FASVFETNL*RTN*GNGD*G*YSREIIF*N*STTNHLL***AYLLRSLCNFNCRPSSKLPNMFL*TLSQLL*RNSKGKSYKPWQNEVSIHQQWL*LHAWWRSST*IMSFKNFKGTC*VLYQMECQW*WKCYLCSKGNWWVW*MYIGAQAYPSTGV
Sbjct:    1 FASVFETNL*RTN*GNGD*G*YSREIIF*N*STTNHLL***AYLLRSLCNFNCRPSSKLPNMFL*TLSQLL*RNSKGKSYKPWQNEVSIHQQWL*LHAWWRSST*IMSFKNFKGTC*VLYQMECQW*WKCYLCSKGNWWVW*MYIGAQAYPSTGV 465

HSP 2 
Score: 365.801 bits (792), Expect = 1.14387e-101
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = -2
Query:    2 PPQWKDTPELQYTFTTPTNFLWSTSNTSITIGTPFDKGLNMFL*SF*KT*FR*RISTMHVIIAIVDVLKLHFATACKTFLSNFFTATETEFIRTCWAASMKVYN*SCTMIAKDTLIIITNGLLYFNFRI*FPLNISLNLHFLSLFFTNLFQIRKQ 466
            PPQWKDTPELQYTFTTPTNFLWSTSNTSITIGTPFDKGLNMFL*SF*KT*FR*RISTMHVIIAIVDVLKLHFATACKTFLSNFFTATETEFIRTCWAASMKVYN*SCTMIAKDTLIIITNGLLYFNFRI*FPLNISLNLHFLSLFFTNLFQIRKQ
Sbjct:    2 PPQWKDTPELQYTFTTPTNFLWSTSNTSITIGTPFDKGLNMFL*SF*KT*FR*RISTMHVIIAIVDVLKLHFATACKTFLSNFFTATETEFIRTCWAASMKVYN*SCTMIAKDTLIIITNGLLYFNFRI*FPLNISLNLHFLSLFFTNLFQIRKQ 466

HSP 3 
Score: 355.263 bits (769), Expect = 1.70166e-98
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 3
Query:    3 CFRI*NKFVKNKLRKWRLRLIFKGNHILKLKYNKPFVIMMSVSFAIIVQLQL*TFIEAAQHVLMNSVSVAVKKFERKVLQAVAK*SFNTSTMAMITCMVEILYLNHVF*KLQRNMLSPLSNGVPMVMEVLLVLQRKLVGVVNVYWSSGVSFHWGG 467
            CFRI*NKFVKNKLRKWRLRLIFKGNHILKLKYNKPFVIMMSVSFAIIVQLQL*TFIEAAQHVLMNSVSVAVKKFERKVLQAVAK*SFNTSTMAMITCMVEILYLNHVF*KLQRNMLSPLSNGVPMVMEVLLVLQRKLVGVVNVYWSSGVSFHWGG
Sbjct:    3 CFRI*NKFVKNKLRKWRLRLIFKGNHILKLKYNKPFVIMMSVSFAIIVQLQL*TFIEAAQHVLMNSVSVAVKKFERKVLQAVAK*SFNTSTMAMITCMVEILYLNHVF*KLQRNMLSPLSNGVPMVMEVLLVLQRKLVGVVNVYWSSGVSFHWGG 467

HSP 4 
Score: 354.804 bits (768), Expect = 2.3378e-98
Identity = 143/155 (92.26%), Postives = 143/155 (92.26%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPT            IRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW
Sbjct:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTCSYELCLSCCEEIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466

HSP 5 
Score: 349.764 bits (757), Expect = 7.69284e-97
Identity = 146/155 (94.19%), Postives = 146/155 (94.19%), Query Frame = -1
Query:    3 STPVEGYA*APIYIHHTHQFPLEXXXXXXXXXHSI**RT*HVPLKFLKDMIQVEDLHHACNHSHC*CIETSFCHGL*DFPFEFLHSN*DRVHKNMLGSFDEGLQLKLHNDRKRYAHHYNKWFVVLQFQNMISLEY*PQSPFP*FVLHKFVSNTEA 467
            STPVEGYA*APIYIHHTHQFPLE         HSI**RT*HVPLKFLKDMIQVEDLHHACNHSHC*CIETSFCHGL*DFPFEFLHSN*DRVHKNMLGSFDEGLQLKLHNDRKRYAHHYNKWFVVLQFQNMISLEY*PQSPFP*FVLHKFVSNTEA
Sbjct:    3 STPVEGYA*APIYIHHTHQFPLEHK*HFHHHWHSI**RT*HVPLKFLKDMIQVEDLHHACNHSHC*CIETSFCHGL*DFPFEFLHSN*DRVHKNMLGSFDEGLQLKLHNDRKRYAHHYNKWFVVLQFQNMISLEY*PQSPFP*FVLHKFVSNTEA 467

HSP 6 
Score: 147.694 bits (316), Expect = 5.25565e-72
Identity = 65/76 (85.53%), Postives = 65/76 (85.53%), Query Frame = -3
Query:  238 HPSGRIRLXXXXXXXXXXXSFGAQVTLPSPLALHLIKDLTCSFEVFKRHDSGRGSPPCM*S*PLLMY*NFILPRLV 465
            HPSGRIRL           SFGAQVTLPSPLALHLIKDLTCSFEVFKRHDSGRGSPPCM*S*PLLMY*NFILPRLV
Sbjct:  238 HPSGRIRLSSNIHSPHPPISFGAQVTLPSPLALHLIKDLTCSFEVFKRHDSGRGSPPCM*S*PLLMY*NFILPRLV 465

HSP 7 
Score: 140.363 bits (300), Expect = 5.25565e-72
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = -3
Query:    1 EHVGQLR*RSTIEVAQ*SQKIRSSL*QMVCCTSISEYDFP*ILASISISLVCSSQICFKYGSK 189
            EHVGQLR*RSTIEVAQ*SQKIRSSL*QMVCCTSISEYDFP*ILASISISLVCSSQICFKYGSK
Sbjct:    1 EHVGQLR*RSTIEVAQ*SQKIRSSL*QMVCCTSISEYDFP*ILASISISLVCSSQICFKYGSK 189

CCall_contig44104_v21.26344e-2550.00%
CCall_contig44104_v2
HSP 1 
Score: 77.5882 bits (163), Expect = 1.26344e-25
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCP 181
            LLP+L++I EEQ  E  +EA  QG    E+++++  C  DER++CD C TSI D HRSCP
Sbjct:  281 LLPFLQRISEEQMVEKNLEAKRQGLLLPELKIEKADCPIDERVYCDICRTSIFDFHRSCP 460

HSP 2 
Score: 46.8882 bits (96), Expect = 1.26344e-25
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 2
Query:  332 TSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELR 445
            +S + +KS  +W AN D ++ C P+++GGCG  ILEL+
Sbjct:   10 SSMDTIKSKSEWKANEDCTIPCPPEDMGGCGLGILELK 123

HSP 3 
Score: 25.8106 bits (50), Expect = 1.26344e-25
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  263 QYINNGYDYMHGG 301
            +Y ++G DY+HGG
Sbjct:  157 EYXDHGLDYLHGG 195

CCall_contig28090_v24.00156e-1743.10%
CCall_contig28090_v2
HSP 1 
Score: 73.9225 bits (155), Expect = 4.00156e-17
Identity = 25/58 (43.10%), Postives = 44/58 (75.86%), Query Frame = 2
Query:    5 LPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSC 178
            LP L+ I +EQ+ E+++EA+I G    E ++ +++  +D+R++CD+C TSIV++HRSC
Sbjct:  176 LPLLRHIQQEQSSELDVEASIHGVKIMEEDISRSVLDDDDRVYCDNCNTSIVNIHRSC 349

HSP 2 
Score: 31.7673 bits (63), Expect = 4.00156e-17
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  401 PKEIGGCGECILELRRILPLGW 466
            PKE GGCG  +L L+RI    W
Sbjct:  614 PKERGGCGREMLVLKRIFKADW 679

CCall_contig46788_v21.85162e-1145.00%
CCall_contig46788_v2
HSP 1 
Score: 66.1329 bits (138), Expect = 1.85162e-11
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCP 181
            LLP LK++  +++ E+E EA   GK  SE+ ++++    +E+  C++C TSIVDLHRSCP
Sbjct:  253 LLPVLKRMNHDRSVELETEAITNGKKTSEVHIKESEFGCNEQNCCNNCKTSIVDLHRSCP 432

Blast Hits to MedicagoProt

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_MedicagoProt_20080227)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
IMGA|AC159536_33.4 Zinc finger, RING-type; Tran8.13767e-5161.29%
cription factor jumonji, jmjC chr08_pseudomolecule_IMGAG_V2 34701365-34695690 E EGN_Mt071002 20080227
HSP 1 
Score: 195.282 bits (495), Expect = 8.13767e-51
Identity = 95/155 (61.29%), Postives = 114/155 (73.55%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            LLPYLKQIC EQ  E +IEA IQGKS SEIE+ Q++C + ER++CDHCATSIVDLHR CP             IR+ S+T R +MKFQY+N GYDYMHGGDPLP SC L+TS  H+ +  + +A  DGSV+C PKE+GGCG  +LELRRILP GW
Sbjct:  258 LLPYLKQICHEQCVEEDIEAKIQGKS-SEIEIPQSLCGDKERVYCDHCATSIVDLHRICPNCSYELCLKCCKEIREGSITPRPEMKFQYVNRGYDYMHGGDPLPVSCDLETSDCHIST--ECNARSDGSVSCVPKEMGGCGSSLLELRRILPHGW 409

IMGA|AC169089_52.4 Zinc finger, RING-type; Tran1.76818e-2137.89%
cription factor jumonji, jmjC; Zinc finger, FYVE/PHD-type chr01_pseudomolecule_IMGAG_V2 28310266-28319310 H EGN_Mt071002 20080227
HSP 1 
Score: 97.8265 bits (242), Expect = 1.76818e-21
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIR-KESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVK--------SFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLPYL+++ EEQ  E EIEA  QG S+S+++V+      ++R++CD+C TSI D HRSC              +R  + L     ++F++I  G DY+HGG    +   +K +K H          S   W A+ DGS+ C PK    CG   LELR ILP
Sbjct:  414 LLPYLRRLDEEQMVEKEIEAKRQGLSHSKLKVKVADYPKNKRVYCDNCKTSIFDYHRSCTECSFNICLLCCCELRCGKLLGGTDPIEFEFIFRGRDYLHGG----KEERVKKNKPHSAAQPEICEWSRFGWHADSDGSIPC-PKADDDCGHGFLELRSILP 569

IMGA|CT863712_25.5 Tran3.9391e-2137.18%
cription factor jumonji, jmjC; Zinc finger, FYVE/PHD-type chr05_pseudomolecule_IMGAG_V2 19264599-19259196 H EGN_Mt071002 20080227
HSP 1 
Score: 96.6709 bits (239), Expect = 3.9391e-21
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQG-KSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESL-TSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHV--KSFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLPYL+Q+  EQ  EMEIEA +QG  S SE++++   C  DE  +CD+C +SI D HRSC              +R+  L    G ++F+ IN G DY+HG   + E+     ++  +  +S  +W    DG++ C PK         LELRR+LP
Sbjct:  122 LLPYLRQLDLEQMAEMEIEARLQGLSSLSELKIKGAYCSKDECAYCDNCQSSIFDYHRSCAKCSFDLCLRCCYELRRGELHGDTGPIEFELINRGQDYLHGEIIIGENESHTAAQPEILERSKSEWHVGSDGNIRC-PKANNEDDHGFLELRRMLP 276

IMGA|AC169089_55.4 Zinc finger, RING-type; Tran4.35518e-2038.99%
cription factor jumonji, jmjC; Zinc finger, FYVE/PHD-type chr01_pseudomolecule_IMGAG_V2 28327085-28332097 E EGN_Mt071002 20080227
HSP 1 
Score: 93.2041 bits (230), Expect = 4.35518e-20
Identity = 62/159 (38.99%), Postives = 80/159 (50.31%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIR-KESLTSRGKMKFQYINNGYDYMHGGD------PLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            L PYL ++ EEQ  E EIEA IQG S SE+ ++       ER++CD C TSI D HRSC              +R  + L     ++F++I  G DY+HGG+        P +  L    E  +S   W AN DGS+ C PK  G  G   LELR  LP
Sbjct:  430 LFPYLSRLDEEQMAEKEIEAKIQGLSLSELNIKVADIPKKERVYCDICKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGEEERVRKKEPRAAALPEIPEWSRS--GWHANDDGSIPC-PKADGDHG--FLELRSTLP 583

IMGA|AC151823_59.4 Zinc finger, RING-type; Tran1.65497e-1937.89%
cription factor jumonji, jmjC; Cupin region; Zinc finger, FYVE/PHD-type chr01_pseudomolecule_IMGAG_V2 28286084-28291378 H EGN_Mt071002 20080227
HSP 1 
Score: 91.2781 bits (225), Expect = 1.65497e-19
Identity = 61/161 (37.89%), Postives = 80/161 (49.69%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIR-KESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVK--------SFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLP+L+++  EQ  E E EA  +G S S++ ++      DER+FCD+C TSI D HRSC              +R  + L     +K  Y   G DY+HGG+   E   +K S  H +        S   W AN DGS+ C PK    C    LELRRILP
Sbjct:  312 LLPHLRRLDAEQMIEKEREAKRRGLSLSKLNIKPADYSKDERVFCDNCKTSIFDYHRSCSKCSFDLCLLCCCELRGGKLLGGADPIKLGYDFRGRDYLHGGN---EEKHVKESLSHAEDESTTREWSRSGWHANVDGSIPC-PKADNECDHGFLELRRILP 468

IMGA|AC161241_11.5 Zinc finger, RING-type; Tran1.89353e-1529.03%
cription factor jumonji, jmjC chr01_pseudomolecule_IMGAG_V2 20618095-20609844 E EGN_Mt071002 20080227
HSP 1 
Score: 77.7962 bits (190), Expect = 1.89353e-15
Identity = 45/155 (29.03%), Postives = 72/155 (46.45%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP +KQI  EQ  E+E+E  ++G   +EI++ +T    DE++ C+ C   I D HR CP+            +R+ +L    + + ++                     T +  +  F  W +N +GS+ C PKE GGCG   L L RI  + W
Sbjct:  282 VLPVVKQIHREQCFEVELEKKLRG---AEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATLHQSEEPQTEHAKT------------------TDRNILSKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNW 415

IMGA|AC149642_41.5 Zinc finger, RING-type; Tran1.95949e-1229.68%
cription factor jumonji, jmjC; Zinc finger, C2H2-type chr04_pseudomolecule_IMGAG_V2 24626165-24633547 E EGN_Mt071002 20080227
HSP 1 
Score: 67.781 bits (164), Expect = 1.95949e-12
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPT--------XXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILEL 442
            LLP LK+I E +  E+E EA I+GKS S+I+++Q      E I+C+HC T ++DLHR+C +                    I    L  R +MK   +++ +  +   D     C   T+   +    + + N     +C P E+GGCG  + +L
Sbjct:  352 LLPVLKRISENRETELETEAKIKGKSISDIQIKQVEFGYSENIYCNHCKTPVLDLHRTCDSCSYSLCLRCCEKLCQRTSGEINSSFLKLRDQMKV-CVDSEHRIL---DQKDICCGNLTATSTLPQ--RTNCNDIEKASCHPTEVGGCGTGLFDL 500

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig11629_v27.58525e-1148.72%
Oall_contig11629_v2
HSP 1 
Score: 54.2195 bits (112), Expect = 7.58525e-11
Identity = 19/39 (48.72%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  350 KSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            + F  W AN DGS+ C P E GGCG   L L RI  + W
Sbjct:  231 EKFPGWQANSDGSIPCPPPEFGGCGHSSLNLSRIFKMNW 347

HSP 2 
Score: 28.5598 bits (56), Expect = 7.58525e-11
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  119 DERIFCDHCATSIVDLHRSC 178
            DE++ C+ C   I D HR C
Sbjct:    3 DEQMCCNFCRIPITDYHRRC 62

Blast Hits to Populus Trichocarpa Proteins

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
gw1.XI.1448.19.36681e-4650.64%
jgi|Poptr1_1|233468|gw1.XI.1448.1
HSP 1 
Score: 179.104 bits (453), Expect = 9.36681e-46
Identity = 79/156 (50.64%), Postives = 113/156 (72.44%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFI-KWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            LLP+L+QIC+EQT+E++IEA I G  Y  +++ +  CY++ER++C++CATSIVD HRSC              IRK SL+SR +  F Y++ G+DYMHGGDPLP  C  +   +H +S +  W+A+ DGS++C P+E+GGCG+C+LEL+RILPLGW
Sbjct:   86 LLPFLEQICDEQTEEVQIEAGIGGILYFPVDIAENFCYSNERVYCNYCATSIVDFHRSCRKCAYELCLSCCREIRKGSLSSRAEKSFWYVDRGFDYMHGGDPLP--CQYQNPYDHSESLVLPWNASEDGSISCPPQELGGCGDCLLELKRILPLGW 239

gw1.166.62.13.33148e-4349.67%
jgi|Poptr1_1|274566|gw1.166.62.1
HSP 1 
Score: 170.629 bits (431), Expect = 3.33148e-43
Identity = 76/153 (49.67%), Postives = 105/153 (68.63%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFI-KWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLP+L+QIC+EQT+EM+IEA I+G   S  ++ +  CY+DER++C+HC TSI+D HRSCP             IRK SL+ R + KF Y++ G  YMHGGDPLP  C  +   +H++  +  W+AN DGS++C P E+GGCG+C LEL+ ILP
Sbjct:   85 LLPFLEQICDEQTEEMQIEAGIRGILCSPFDIAENFCYSDERVYCNHCTTSIIDFHRSCPNCSYELCLSCCREIRKGSLSRRAEKKFWYVDRGSGYMHGGDPLP--CHSQNPYDHIEPLVLSWNANEDGSISCPPNEMGGCGDCALELKHILP 235

fgenesh4_pg.C_LG_XV0001252.17448e-1833.56%
jgi|Poptr1_1|775697|fgenesh4_pg.C_LG_XV000125
HSP 1 
Score: 88.1965 bits (217), Expect = 2.17448e-18
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    5 LPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRI 451
            LP L+ I  EQ  E+ +++ I G   +E  V +++  +D+R++CD+C+TSIV+ HRSCP                  LT   +++  +   G         L   C    S +    F  W A  DG + C PKE+GGCG  IL LRRI
Sbjct:   59 LPLLRHIQREQNSEIYVDSRIHGSLLTEEHVTKSLLDDDDRVYCDNCSTSIVNFHRSCPNPDCSYDL---------CLTCCSELRIGFKPGGLGCKTQVSDLESKCTADMSCK----FPDWRAESDGRIPCPPKELGGCGNEILTLRRI 194

gw1.IV.2179.12.40417e-1734.15%
jgi|Poptr1_1|197090|gw1.IV.2179.1
HSP 1 
Score: 84.7297 bits (208), Expect = 2.40417e-17
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGK-SYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPE-SCLLKTSKEHVKSFI-------KWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            LLP LKQI ++Q+ E+EIEA I+G    +E+++QQ     +++  C++C  SIVD HR+CP             I   SL    K       NG      G  L E   L  T   +   F+       + +A+ +GS+ C P+E GGCG  +L+L  I PL W
Sbjct:   83 LLPILKQINQDQSVEIEIEAKIKGSLKPTEVQIQQAEISCNKQCCCNNCKASIVDFHRTCPDCSYSLCLSCCQDIFHGSLHGSVKGLLCKCPNGRKACISGKQLSEMKSLCATKLSYGSRFLGSTFSPCQGAAHCNGSIPCPPREFGGCGGSLLDLSCIFPLSW 246

gw1.V.3284.11.72294e-1534.21%
jgi|Poptr1_1|207883|gw1.V.3284.1
HSP 1 
Score: 78.5666 bits (192), Expect = 1.72294e-15
Identity = 52/152 (34.21%), Postives = 69/152 (45.39%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLP+LKQ+ EEQ  E EIEA  +G   + ++++   C  DER+FCD+C TSI D HRSC              IR                    ++ GG P  E      SK+ +     W AN DGS+ CA      C    LEL+ + P
Sbjct:   83 LLPFLKQLDEEQMMEREIEARREGVPLAGLQIENAECPADERMFCDNCRTSIFDYHRSCSNCSSDLCLACCREIRA------------------GHLQGGGPDTE------SKDFMGPKSGWKANEDGSIHCA------CDSGNLELKCLFP 204

gw1.V.3035.15.54252e-1432.24%
jgi|Poptr1_1|207634|gw1.V.3035.1
HSP 1 
Score: 73.559 bits (179), Expect = 5.54252e-14
Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILP 457
            LLP+LK++  EQ  E EIEA I+G   ++++++   C  DER+FCD+C TSI D HRSC              I  E LT   K                           S++ +     W AN DGS+ CA      CG   L+L+ + P
Sbjct:   90 LLPFLKRLDAEQMTEREIEARIRGVPPADLQIENASCPADERMFCDNCRTSIFDYHRSCSNCSSDLCLLCCREIH-ELLTGSPKK------------------------TVSEDFIGPKSGWKANEDGSIHCA------CGSGNLQLKCLFP 210

fgenesh4_pg.C_LG_XI0003453.97204e-1251.67%
jgi|Poptr1_1|771192|fgenesh4_pg.C_LG_XI000345
HSP 1 
Score: 67.3958 bits (163), Expect = 3.97204e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCP 181
            LLP LKQI ++Q+ E+EIEA I+G+  SE+++QQ     +++  C++C TSIVD HRSCP
Sbjct:  299 LLPILKQINQDQSIELEIEAKIKGQKPSEVQIQQAEVSCNKQCCCNNCKTSIVDFHRSCP 358

Blast Hits to TAIR7 Peptides

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_TAIR7_pep_20070425)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AT1G62310.1 1.03642e-3849.36%
transcription factor jumonji (jmjC) domain-containing protein | chr1:23039704-23042966 REVERSE
HSP 1 
Score: 155.606 bits (392), Expect = 1.03642e-38
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVK-SFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP+L ++   Q  E+E EA +QGK  SE+E+   I Y DER++CDHCATSIVDLHRSCP             IR+ SL+ R +MKF Y++ G+ YMHG D    S       E    S  KWS   +GS+TCAP+++GGCGE +LELRRILPL W
Sbjct:  294 MLPFLNKLSIFQKLEIEFEATVQGKLPSEVEITAAISYTDERVYCDHCATSIVDLHRSCPKCSYELCLKCCQEIREGSLSERPEMKFHYVDRGHRYMHGLDAAEPSLSSTFEDEEANPSDAKWSLGENGSITCAPEKLGGCGERMLELRRILPLTW 449

AT1G11950.1 4.81435e-3643.23%
transcription factor jumonji (jmjC) domain-containing protein | chr1:4034745-4038308 REVERSE
HSP 1 
Score: 146.747 bits (369), Expect = 4.81435e-36
Identity = 67/155 (43.23%), Postives = 101/155 (65.16%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP+LK++C+ Q +E+E EA +Q    S++++ +++C N+ER+FC+HCATSIVDLHRSCP             IR   L+ R + + Q+   G  Y+HG    P S  +   +    S IKW+A+ +GS+ CAPKE+GGCG+ +LEL+RILP+ W
Sbjct:  278 MLPFLKKLCKAQDQEIETEAKVQDSMASQVDISESLCSNEERVFCNHCATSIVDLHRSCPKCSYELCLNCCQEIRGGWLSDRPECQLQFEYRGTRYIHGEAAEPSSSSVSEDETKTPS-IKWNADENGSIRCAPKELGGCGDSVLELKRILPVTW 431

AT3G07610.2 5.53394e-1640.00%
transcription factor jumonji (jmjC) domain-containing protein | chr3:2426154-2429364 FORWARD
HSP 1 
Score: 80.1073 bits (196), Expect = 5.53394e-16
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRK-ESLTSRGKMKFQYINNGYDYMHG 298
            LLP+LK I +EQ  E E+EA I G  + E+  Q    + DER++CD C TSI DLHR+C +            IR  ++L  +  + + YIN G +Y HG
Sbjct:  241 LLPHLKGINDEQVAEKEVEAKIYGLKFEEVRPQDAKAFPDERLYCDICKTSIYDLHRNCKSCSFDICLSCCLEIRNGKALACKEDVSWNYINRGLEYEHG 340

AT3G07610.1 5.53394e-1640.00%
transcription factor jumonji (jmjC) domain-containing protein | chr3:2426154-2432882 FORWARD
HSP 1 
Score: 80.1073 bits (196), Expect = 5.53394e-16
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRK-ESLTSRGKMKFQYINNGYDYMHG 298
            LLP+LK I +EQ  E E+EA I G  + E+  Q    + DER++CD C TSI DLHR+C +            IR  ++L  +  + + YIN G +Y HG
Sbjct:  241 LLPHLKGINDEQVAEKEVEAKIYGLKFEEVRPQDAKAFPDERLYCDICKTSIYDLHRNCKSCSFDICLSCCLEIRNGKALACKEDVSWNYINRGLEYEHG 340

AT1G09060.3 7.99099e-1531.61%
transcription factor | chr1:2921238-2925257 REVERSE
HSP 1 
Score: 76.2554 bits (186), Expect = 7.99099e-15
Identity = 49/155 (31.61%), Postives = 70/155 (45.16%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP +KQI  EQ  E+E+E  ++     EI++ +     DE++ C+ C   +VD +R CP             +R+ES      +     N       G   L  +   K        F +W ANGDGS+ C PKE GGCG   L L RI  + W
Sbjct:  305 VLPVIKQIHLEQCMEVELEKRLREV---EIDLVRARLKADEQMCCNVCRIPVVDYYRHCPNCSYDLCLRCCQDLREES-----SVTISGTNQNVQDRKGAPKLKLNFSYK--------FPEWEANGDGSIPCPPKEYGGCGSHSLNLARIFKMNW 443

AT1G09060.2 7.99099e-1531.61%
transcription factor jumonji (jmjC) domain-containing protein | chr1:2921238-2925215 REVERSE
HSP 1 
Score: 76.2554 bits (186), Expect = 7.99099e-15
Identity = 49/155 (31.61%), Postives = 70/155 (45.16%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP +KQI  EQ  E+E+E  ++     EI++ +     DE++ C+ C   +VD +R CP             +R+ES      +     N       G   L  +   K        F +W ANGDGS+ C PKE GGCG   L L RI  + W
Sbjct:  291 VLPVIKQIHLEQCMEVELEKRLREV---EIDLVRARLKADEQMCCNVCRIPVVDYYRHCPNCSYDLCLRCCQDLREES-----SVTISGTNQNVQDRKGAPKLKLNFSYK--------FPEWEANGDGSIPCPPKEYGGCGSHSLNLARIFKMNW 429

AT1G09060.1 7.99099e-1531.61%
transcription factor jumonji (jmjC) domain-containing protein | chr1:2921238-2925215 REVERSE
HSP 1 
Score: 76.2554 bits (186), Expect = 7.99099e-15
Identity = 49/155 (31.61%), Postives = 70/155 (45.16%), Query Frame = 2
Query:    2 LLPYLKQICEEQTKEMEIEANIQGKSYSEIEVQQTICYNDERIFCDHCATSIVDLHRSCPTXXXXXXXXXXXXIRKESLTSRGKMKFQYINNGYDYMHGGDPLPESCLLKTSKEHVKSFIKWSANGDGSVTCAPKEIGGCGECILELRRILPLGW 466
            +LP +KQI  EQ  E+E+E  ++     EI++ +     DE++ C+ C   +VD +R CP             +R+ES      +     N       G   L  +   K        F +W ANGDGS+ C PKE GGCG   L L RI  + W
Sbjct:  291 VLPVIKQIHLEQCMEVELEKRLREV---EIDLVRARLKADEQMCCNVCRIPVVDYYRHCPNCSYDLCLRCCQDLREES-----SVTISGTNQNVQDRKGAPKLKLNFSYK--------FPEWEANGDGSIPCPPKEYGGCGSHSLNLARIFKMNW 429

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