CC454_contig18244_v2

NameCC454_contig18244_v2
AccessionID2630472
Sequence
TTTGATGTCATTTGTAAGATCTTATGTGGTTCCAGAAGGTTTCCCTGATA
GCGTTATTCCTTCGTATGTTCCATATATGACATGGAGAGCTTTGAAGCAT
TTCTTTGGTGGAGCAATGGGCGTTTTCACGACGCAAACGCTTTTGAATTC
AGTTGGAGTCTCTAGAAACCRAGCAACTYCTGGMGCTGTTGCTATTAACT
GGATTCTCAAGGATGGTGCTGGTCGTGTTGGGAAAATGCTTTTTGCCCGY
CAAGGAAAGAAGTTTGATTATGAYTTAAAACAGCTACGATTTACGGGTGA
TCTCCTTWTGGAGTTGGGTgCTGSTGTGGAGTTGGCAACTGCAGCTGTGC
CACACCTTTTTCTTCCTTTGGCTTGTGCTGCTAACGTWKTAAAGAATGTG
GCTGCTGTAACATCAACATCAACTCGTACACCAATTTACAAAGCCTTTGC
CAAAGGAGAAAACATAGGGGATGTAACTGCTaAAAGGAGAATGTGTTGGG
AATATTGCAGATCTGCTGGGAACTGGG
Length527
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST CCNHS_180105_3760_0662 0-258
EST CCNHS_234752_3113_1780 161-416
EST CCMHS_290993_1611_2347 243-507
EST CCNHS_201286_2531_2642 273-527

InterProScan Analysis

Analysis Date: 02-12-2010 (Interpro: CC454_contigs_v2)
SEQUENCE: CC454_contig18244_v2_2_ORF1 CRC64: AE4C472E5DAFCFCC LENGTH: 175 aa
InterPro
IPR006968
Family
Protein of unknown function DUF647
PTHR12770 [3-161]T 2.8e-122 PTHR12770 FAMILY NOT NAMED FAMILY NOT NAMED
PF04884 [3-161]T 1e-90 PF04884 DUF647 DUF647
noIPR
unintegrated
unintegrated
PTHR12770:SF6 [3-161]T 2.8e-122 PTHR12770:SF6 SUBFAMILY NOT NAMED SUBFAMILY NOT NAMED
seg [101-116]? NA seg seg[124-136]? NA seg seg seg
SEQUENCE: CC454_contig18244_v2_4_ORF2 CRC64: BC7E27DD5A6282A7 LENGTH: 55 aa
noIPR
unintegrated
unintegrated
seg [5-17]? NA seg seg seg
SEQUENCE: CC454_contig18244_v2_4_ORF3 CRC64: D476BA14480E0E46 LENGTH: 81 aa
No hits reported.
SEQUENCE: CC454_contig18244_v2_2_ORF1 CRC64: AE4C472E5DAFCFCC LENGTH: 175 aa
InterPro
IPR006968
Family
Protein of unknown function DUF647
PANTHERPTHR12770FAMILY NOT NAMED
 2.8e-122 [3-161]T       
PFAMPF04884DUF647
 1e-90 [3-161]T       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
noIPR
unintegrated
unintegrated
PANTHERPTHR12770:SF6SUBFAMILY NOT NAMED
 2.8e-122 [3-161]T       
SEGseg seg
 NA [101-116]?   NA [124-136]?     
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig18244_v2_4_ORF2 CRC64: BC7E27DD5A6282A7 LENGTH: 55 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [5-17]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig18244_v2_4_ORF3 CRC64: D476BA14480E0E46 LENGTH: 81 aa
No hits reported.

Blast Hits to Contigs V2 AC454

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_AC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AC454_contig31709_v22.9771e-2686.21%
AC454_contig31709_v2
HSP 1 
Score: 61.0927 bits (127), Expect = 2.9771e-26
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = -1
Query:  396 *QLHPLCFLLWQRLCKLVYELMLMLQQPH 482
            *QL P CFLL QRLCKL+YELMLMLQQPH
Sbjct:  350 *QLRPRCFLLRQRLCKLLYELMLMLQQPH 436

HSP 2 
Score: 50.0956 bits (103), Expect = 2.9771e-26
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = -3
Query:  313 LAAQAKGRKRCGTAAVANSTXAPN 384
            LAAQAKGRKRCG AAVANST  PN
Sbjct:  449 LAAQAKGRKRCGMAAVANSTPRPN 520

HSP 3 
Score: 40.4733 bits (82), Expect = 2.9771e-26
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -1
Query:  483 PSSQQICNIPNTFSF 527
            PSSQQICNIPNTFSF
Sbjct:  306 PSSQQICNIPNTFSF 350

HSP 4 
Score: 56.0524 bits (116), Expect = 5.81755e-22
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = -2
Query:  407 PTHSPFSSYIPYVFSFGKGFVNWCTS*C*CY 499
            P    FSSY+P VFS GKGFVN CTS*C*CY
Sbjct:  333 PNTFSFSSYVPDVFS*GKGFVNCCTS*C*CY 425

HSP 5 
Score: 46.8882 bits (96), Expect = 5.81755e-22
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = -2
Query:  314 QRKKKVWHSCSCQLHXSTQ 370
            QRKKKVWH CSCQLH  TQ
Sbjct:  463 QRKKKVWHGCSCQLHTKTQ 519

HSP 6 
Score: 34.0583 bits (68), Expect = 5.81755e-22
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = -3
Query:  484 QFPADLQYSQHILL 525
            QFPADLQ+SQHILL
Sbjct:  308 QFPADLQHSQHILL 349

HSP 7 
Score: 56.5106 bits (117), Expect = 1.47874e-19
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 1
Query:  409 NININSYTNLQSLCQRRKHRGCNC*K 486
            NININSY+NLQSLC RRKHRG NC*+
Sbjct:  346 NININSYSNLQSLCLRRKHRGRNC*R 423

HSP 8 
Score: 40.9315 bits (83), Expect = 1.47874e-19
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  485 RRMCWEYCRSAGNW 526
            RRMCWE CRSAGNW
Sbjct:  307 RRMCWECCRSAGNW 348

HSP 9 
Score: 31.3091 bits (62), Expect = 1.47874e-19
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  337 NCSCATPFSSFGL 375
            NCS ATPFSSFGL
Sbjct:  458 NCSHATPFSSFGL 496

HSP 10 
Score: 39.0986 bits (79), Expect = 1.6608e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  424 LAVTSPMFSPLAKAL*IGVR 483
            LAVTSPMFSP AKAL*I VR
Sbjct:  349 LAVTSPMFSPKAKAL*IAVR 408

HSP 11 
Score: 36.3494 bits (73), Expect = 1.6608e-14
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = -2
Query:  467 PVPSRSAIFPTHSPFSSYIP 526
            PVPSRSA FPTHSP +   P
Sbjct:  307 PVPSRSATFPTHSPLAVTSP 366

HSP 12 
Score: 35.8912 bits (72), Expect = 1.6608e-14
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  348 SLXR*QHKPKEEKGVA 395
            SL R*QHKPKEEKGVA
Sbjct:  438 SLLR*QHKPKEEKGVA 485

HSP 13 
Score: 53.7613 bits (111), Expect = 4.77768e-14
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 2
Query:  410 TSTSTRTPIYKAFAKGENIGDVTAK 484
            TSTSTRT IYKAFA GENIGDVTAK
Sbjct:  348 TSTSTRTAIYKAFALGENIGDVTAK 422

HSP 14 
Score: 39.0986 bits (79), Expect = 4.77768e-14
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGN+ADLLGTG
Sbjct:  306 KGECVGNVADLLGTG 350

Blast Hits to Contigs V2 CCall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig18100_v28.23651e-10489.71%
CCall_contig18100_v2
HSP 1 
Score: 373.133 bits (808), Expect = 8.23651e-104
Identity = 157/175 (89.71%), Postives = 157/175 (89.71%), Query Frame = 1
Query:    1 FDVICKILCGSRRFP**RYSFVCSIYDMESFEAFLWWSNGRFHDANAFEFSWSL*KPSNXWXCCY*LDSQGWCWSCWENAFCPXRKEV*L*XKTATIYG*SPXXXXXXXXXXNCSCATPFSSFGLXXXXXXXXXXXNININSYTNLQSLCQRRKHRGCNC*KENVLGILQICWEL 525
            FDVICKILCGSRRFP**RYSFVCSIYDMESFEAFLWWSNGRFHDANAFEFSWSL*KPSNXWXCCY*LDSQGWCWSCWENAFCPXRKEV*L*XKTATIYG*SPX    X    NCSCATPFSSFGL    X      NININSYTNLQSLCQRRKHRGCNC*KENVLGILQICWEL
Sbjct:    1 FDVICKILCGSRRFP**RYSFVCSIYDMESFEAFLWWSNGRFHDANAFEFSWSL*KPSNXWXCCY*LDSQGWCWSCWENAFCPXRKEV*L*XKTATIYG*SPXGVGCXCGVGNCSCATPFSSFGLCC*RXKECGCCNININSYTNLQSLCQRRKHRGCNC*KENVLGILQICWEL 525

HSP 2 
Score: 357.554 bits (774), Expect = 4.03197e-99
Identity = 164/175 (93.71%), Postives = 164/175 (93.71%), Query Frame = -3
Query:    1 QFPADLQYSQHILLLAVTSPMFSPLAKAL*IGVRXXXXXXXXXXXXTLAAQAKGRKRCGTAAVANSTXAPNSXRRSPVNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLIATAPXVAXFLETPTEFKSVCVVKTPIAPPKKCFKALHVIYGTYEGITLSGKPSGTT*DLTNDIK 525
            QFPADLQYSQHILLLAVTSPMFSPLAKAL*IGVR           XTLAAQAKGRKRCGTAAVANSTXAPNSXRRSPVNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLIATAPXVAXFLETPTEFKSVCVVKTPIAPPKKCFKALHVIYGTYEGITLSGKPSGTT*DLTNDIK
Sbjct:    1 QFPADLQYSQHILLLAVTSPMFSPLAKAL*IGVRVDVDVTAATFFXTLAAQAKGRKRCGTAAVANSTXAPNSXRRSPVNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLIATAPXVAXFLETPTEFKSVCVVKTPIAPPKKCFKALHVIYGTYEGITLSGKPSGTT*DLTNDIK 525

HSP 3 
Score: 355.721 bits (770), Expect = 1.43633e-98
Identity = 163/175 (93.14%), Postives = 163/175 (93.14%), Query Frame = -1
Query:    3 PSSQQICNIPNTFSF*QLHPLCFLLWQRLCKLVYELMLMLQQPHSLXR*QHKPKEEKGVAXXXXXXXXXXXXXXGDHP*IVAVLXHNQTSFLXGQKAFSQHDQHHP*ESS**QQXQXLLGF*RLQLNSKAFAS*KRPLLHQRNASKLSMSYMEHTKE*RYQGNLLEPHKILQMTS 527
            PSSQQICNIPNTFSF*QLHPLCFLLWQRLCKLVYELMLMLQQPHSLXR*QHKPKEEKGVA       X     XGDHP*IVAVLXHNQTSFLXGQKAFSQHDQHHP*ESS**QQXQXLLGF*RLQLNSKAFAS*KRPLLHQRNASKLSMSYMEHTKE*RYQGNLLEPHKILQMTS
Sbjct:    3 PSSQQICNIPNTFSF*QLHPLCFLLWQRLCKLVYELMLMLQQPHSLXR*QHKPKEEKGVAQLQLPTPXQHPTPXGDHP*IVAVLXHNQTSFLXGQKAFSQHDQHHP*ESS**QQXQXLLGF*RLQLNSKAFAS*KRPLLHQRNASKLSMSYMEHTKE*RYQGNLLEPHKILQMTS 527

HSP 4 
Score: 237.503 bits (512), Expect = 2.85976e-91
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD 301
            LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD
Sbjct:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD 301

HSP 5 
Score: 115.161 bits (245), Expect = 2.85976e-91
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2
Query:  350 PHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAKRRMCWEYCRSAGNW 526
            PHLFLPL      X      TSTSTRTPIYKAFAKGENIGDVTAKRRMCWEYCRSAGNW
Sbjct:  350 PHLFLPLACAANVXKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKRRMCWEYCRSAGNW 526

HSP 6 
Score: 195.806 bits (421), Expect = 2.40059e-82
Identity = 91/107 (85.05%), Postives = 91/107 (85.05%), Query Frame = -2
Query:  206 PVPSRSAIFPTHSPFSSYIPYVFSFGKGFVNWCTS*C*CYXXXXXXXXXXXSQRKKKVWHSCSCQLHXSTQLXKEITRKS*LF*XIIXXXXXXXXKHFPNTTSTILE 526
            PVPSRSAIFPTHSPFSSYIPYVFSFGKGFVNWCTS*C*CY     XX    SQRKKKVWHSCSCQLHXSTQLXKEITRKS*LF*XII     X  KHFPNTTSTILE
Sbjct:  206 PVPSRSAIFPTHSPFSSYIPYVFSFGKGFVNWCTS*C*CYSSHILXXVSSTSQRKKKVWHSCSCQLHXSTQLXKEITRKS*LF*XIIKLLSLXGKKHFPNTTSTILE 526

HSP 7 
Score: 127.075 bits (271), Expect = 2.40059e-82
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -2
Query:    2 *IQKRLRRENAHCSTKEMLQSSPCHIWNIRRNNAIRETFWNHIRSYK*HQ 151
            *IQKRLRRENAHCSTKEMLQSSPCHIWNIRRNNAIRETFWNHIRSYK*HQ
Sbjct:    2 *IQKRLRRENAHCSTKEMLQSSPCHIWNIRRNNAIRETFWNHIRSYK*HQ 151

HSP 8 
Score: 111.954 bits (238), Expect = 4.56677e-58
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3
Query:    3 *CHL*DLMWFQKVSLIALFLRMFHI*HGEL*SISLVEQWAFSRRKRF*I 149
            *CHL*DLMWFQKVSLIALFLRMFHI*HGEL*SISLVEQWAFSRRKRF*I
Sbjct:    3 *CHL*DLMWFQKVSLIALFLRMFHI*HGEL*SISLVEQWAFSRRKRF*I 149

HSP 9 
Score: 74.3807 bits (156), Expect = 4.56677e-58
Identity = 38/51 (74.51%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  201 GFSRMVLVVLGKCFLPXKERSLIMX*NSYDLRVIXXXXXXXXXXXXXXXCH 353
            GFSRMVLVVLGKCFLPXKERSLIMX*NSYDLRVI X     X       CH
Sbjct:  201 GFSRMVLVVLGKCFLPXKERSLIMX*NSYDLRVISXWSWVLXWSWQLQLCH 353

HSP 10 
Score: 73.9225 bits (155), Expect = 4.56677e-58
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3
Query:  435 FTKPLPKEKT*GM*LLKGECVGNIADLLGTG 527
            FTKPLPKEKT*GM*LLKGECVGNIADLLGTG
Sbjct:  435 FTKPLPKEKT*GM*LLKGECVGNIADLLGTG 527

CCall_contig45179_v21.23157e-1240.28%
CCall_contig45179_v2
HSP 1 
Score: 70.2568 bits (147), Expect = 1.23157e-12
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 2
Query:   29 VPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLF 244
            VPEGFP SV P YVP+  W  L+        + +TQ LL+++GV    AT       W L+D  G +G +LF
Sbjct:  520 VPEGFPSSVTPDYVPFQVWDLLQGLSTYIRMMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGILF 735

Blast Hits to MedicagoProt

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_MedicagoProt_20080227)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
IMGA|AC144806_8.4 Protein of unknown function DUF647 chr04_p2.20942e-6774.85%
eudomolecule_IMGAG_V2 20685580-20692547 E EGN_Mt071002 20080227
HSP 1 
Score: 236.113 bits (601), Expect = 2.20942e-67
Identity = 122/163 (74.85%), Postives = 126/163 (77.30%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXAT--XGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            +MSF+ SYVVPEGFP +V PSYVPYMTWRALKHFFGGAMGVFTTQTLL+SVGVSRN AT    AVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD                PHLFLPL             TSTSTRTPIYKAFAKGENIGDVTAK
Sbjct:   97 MMSFITSYVVPEGFPHTVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLSSVGVSRNRATPAAAAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDLLMELGAGVELATAAMPHLFLPLACAANVLKNVGAVTSTSTRTPIYKAFAKGENIGDVTAK 259

HSP 2 
Score: 35.4242 bits (80), Expect = 2.20942e-67
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGNIADLLGTG
Sbjct:  259 KGECVGNIADLLGTG 273

IMGA|CT025839_69.5 Protein of unknown function DUF647 chr05_p1.24238e-1934.18%
eudomolecule_IMGAG_V2 9920654-9927126 E EGN_Mt071002 20080227
HSP 1 
Score: 92.0485 bits (227), Expect = 1.24238e-19
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = 2
Query:   11 FVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            FV   ++PEGFP+SV   Y+ Y  WR ++       GV  TQ LL +VG+ +  A   A AINW+LKDG G + K+L +  G+ FD + K  R   D                PHLF+P+                STR+  +  FA   N  +V AK
Sbjct:  174 FVVRLMLPEGFPNSVTSDYLEYSLWRGVQGVACQVSGVLATQALLYAVGLGKG-AIPTAAAINWVLKDGIGYLSKILLSDFGRHFDVNPKGWRLFADLLENAAFGLEMCTPAFPHLFVPIGAFAGASRSAASLIQASTRSCFFAGFAAQRNFAEVIAK 330

IMGA|CT963115_22.5 Protein of unknown function DUF647 chr05_p7.05467e-1530.07%
eudomolecule_IMGAG_V2 18029086-18022175 E EGN_Mt071002 20080227
HSP 1 
Score: 76.2554 bits (186), Expect = 7.05467e-15
Identity = 46/153 (30.07%), Postives = 65/153 (42.48%), Query Frame = 2
Query:   29 VPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFA-RQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            VPEGFP SV P YVP+  W  L+        + +TQ LL+++GV    AT       W L+D  G +G +LF   QG   D + K  R   D                P  F+ +              S +TR  + + FA  +N  D++AK
Sbjct:   66 VPEGFPSSVTPDYVPFQIWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLISPLFPSAFVFIVCLGSISRSFTGVASGATRAALTQHFALQDNAADISAK 218

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig36082_v21.77196e-4870.59%
Oall_contig36082_v2
HSP 1 
Score: 170.146 bits (365), Expect = 1.77196e-48
Identity = 72/102 (70.59%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  181 WXCCY*LDSQGWCWSCWENAFCPXRKEV*L*XKTATIYG*SPXXXXXXXXXXNCSCATPFSSFGLXXXXXXXXXXXNININSYTNLQSLCQRRKHRGCNC*K 486
            W CCY*LDSQGWCWSCW+NAFCPXRKEV*L* KTATI  *S     X     NCS ATPFSSFGL           NININSY+NLQSLC RRKHRGCNC*+
Sbjct:    2 WSCCY*LDSQGWCWSCWKNAFCPXRKEV*L*FKTATIXX*SLYGVGXWCGVGNCSXATPFSSFGLCC*RSKECGCCNININSYSNLQSLCXRRKHRGCNC*R 307

HSP 2 
Score: 39.0986 bits (79), Expect = 1.77196e-48
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  485 RRMCWEYCRSAGNW 526
            RRMCWE CRS GNW
Sbjct:  305 RRMCWEXCRSXGNW 346

HSP 3 
Score: 169.688 bits (364), Expect = 6.24889e-48
Identity = 80/101 (79.21%), Postives = 81/101 (80.20%), Query Frame = -3
Query:  181 LAVTSPMFSPLAKAL*IGVRXXXXXXXXXXXXTLAAQAKGRKRCGTAAVANSTXAPNSXRRSPVNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLIATAP 483
            LAVTSPMFSP AKAL*I VR            TLAAQAKGRKRCGTAAVANST  PNS +RS  NRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQL ATAP
Sbjct:    2 LAVTSPMFSPXAKAL*IAVRVDVDVTAATLFTTLAAQAKGRKRCGTAAVANSTPXPNSIKRSXXNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLXATAP 304

HSP 4 
Score: 37.724 bits (76), Expect = 6.24889e-48
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  483 PSSQQICNIPNTFSF 527
            PSSQ ICNIPNTFSF
Sbjct:  303 PSSQXICNIPNTFSF 347

HSP 5 
Score: 104.164 bits (221), Expect = 2.15701e-45
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = -1
Query:  348 *QLHPLCFLLWQRLCKLVYELMLMLQQPHSLXR*QHKPKEEKGVA 482
            *QLHP CFLLWQRLCKL+YELMLMLQQPHSL R*QHKPKEEKGVA
Sbjct:  169 *QLHPRCFLLWQRLCKLLYELMLMLQQPHSLLR*QHKPKEEKGVA 303

HSP 6 
Score: 78.9628 bits (166), Expect = 2.15701e-45
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = -1
Query:  180 DHP*IVAVLXHNQTSFLXGQKAFSQHDQHHP*ESS**QQXQ 302
            DH  IVAVL HNQTSFLXGQKAF QHDQHHP*ESS**QQ Q
Sbjct:    1 DHXXIVAVLNHNQTSFLXGQKAFFQHDQHHP*ESS**QQLQ 123

HSP 7 
Score: 34.0583 bits (68), Expect = 2.15701e-45
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = -2
Query:  467 PVPSRSAIFPTHSPFSSYIP 526
            PVP RSA FPTHSP +   P
Sbjct:  287 PVPXRSAXFPTHSPLAVTSP 346

HSP 8 
Score: 90.8762 bits (192), Expect = 9.44234e-39
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 2
Query:  182 GAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD 301
            GAVA NWILKDGAGRVGKMLFARQGKKFDYDLKQLRF  D
Sbjct:    3 GAVAXNWILKDGAGRVGKMLFARQGKKFDYDLKQLRFXXD 122

HSP 9 
Score: 66.5912 bits (139), Expect = 9.44234e-39
Identity = 30/45 (66.67%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  350 PHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            PHLFLPL             TSTSTRT IYKAFA GENIGDVTAK
Sbjct:  171 PHLFLPLACAANVVKSVAAVTSTSTRTAIYKAFAXGENIGDVTAK 305

HSP 10 
Score: 37.2658 bits (75), Expect = 9.44234e-39
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGN ADLLGTG
Sbjct:  303 KGECVGNXADLLGTG 347

HSP 11 
Score: 139.905 bits (299), Expect = 7.38758e-37
Identity = 67/98 (68.37%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  206 PTHSPFSSYIPYVFSFGKGFVNWCTS*C*CYXXXXXXXXXXXSQRKKKVWHSCSCQLHXSTQLXKEITRKS*LF*XIIXXXXXXXXKHFPNTTSTILE 499
            P    FSSYIP VFS GKGFVN CTS*C*CY           SQRKKKVWH CSCQLH  TQL KEITRKS*LF* II     X  KHF NTTSTILE
Sbjct:   27 PNTFSFSSYIPDVFSXGKGFVNCCTS*C*CYSSHTLYYVSSTSQRKKKVWHXCSCQLHTXTQLHKEITRKS*LF*IIIKLLSLXGKKHFSNTTSTILE 320

HSP 12 
Score: 30.3927 bits (60), Expect = 7.38758e-37
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  484 QFPADLQYSQHILL 525
            QFP DLQ SQHILL
Sbjct:  304 QFPXDLQXSQHILL 345

HSP 13 
Score: 70.715 bits (148), Expect = 4.80916e-22
Identity = 35/51 (68.63%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  201 GFSRMVLVVLGKCFLPXKERSLIMX*NSYDLRVIXXXXXXXXXXXXXXXCH 353
            GFSRMVLVVL KCFLPXKERSLIM *NSYDLRVI              XCH
Sbjct:   22 GFSRMVLVVLEKCFLPXKERSLIMI*NSYDLRVISLWSWVLVWSWQLQXCH 174

HSP 14 
Score: 36.3494 bits (73), Expect = 4.80916e-22
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  435 FTKPLPKEKT*GM*LLKGECVG 500
            FTKPLP EKT GM*LLK   +G
Sbjct:  256 FTKPLPXEKTSGM*LLKENVLG 321

HSP 15 
Score: 30.8509 bits (61), Expect = 4.80916e-22
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  484 KENVLGILQICWEL 525
            KENVLG LQI WEL
Sbjct:  304 KENVLGXLQIXWEL 345

Oall_contig13459_v24.37574e-3588.71%
Oall_contig13459_v2
HSP 1 
Score: 144.487 bits (309), Expect = 4.37574e-35
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    4 DVICKILCGSRRFP**RYSFVCSIYDMESFEAFLWWSNGRFHDANAFEFSWSL*KPSNXWXC 189
            DVICKILCGSRRFP**RYSFVCS+YDMESFEAFLWWSNG FH+ NAFEFSWSL*KP N W C
Sbjct:    1 DVICKILCGSRRFP**RYSFVCSLYDMESFEAFLWWSNGCFHNTNAFEFSWSL*KPXNSWSC 186

HSP 2 
Score: 143.57 bits (307), Expect = 8.25887e-35
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGA 187
            LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLL+SVGVSRN AT GA
Sbjct:    3 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLSSVGVSRNRATPGA 188

HSP 3 
Score: 138.53 bits (296), Expect = 2.71769e-33
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = -3
Query:    1 TAPXVAXFLETPTEFKSVCVVKTPIAPPKKCFKALHVIYGTYEGITLSGKPSGTT*DLTNDIK 189
            TAP VA FLETPTE KSVCVVKTPIAPPKKCFKALHVI GTYEGITLSGKPSGTT*DLTNDI+
Sbjct:    1 TAPGVARFLETPTELKSVCVVKTPIAPPKKCFKALHVI*GTYEGITLSGKPSGTT*DLTNDIR 189

HSP 4 
Score: 123.867 bits (264), Expect = 7.04863e-29
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = -1
Query:    3 QXQXLLGF*RLQLNSKAFAS*KRPLLHQRNASKLSMSYMEHTKE*RYQGNLLEPHKILQMTS 188
            Q Q L GF*RLQLNSKAF  *K PLLHQRNASKLSMSY EHTKE*RYQGNLLEPHKILQMTS
Sbjct:    2 QLQELXGF*RLQLNSKAFVL*KHPLLHQRNASKLSMSYKEHTKE*RYQGNLLEPHKILQMTS 187

HSP 5 
Score: 109.205 bits (232), Expect = 1.82814e-24
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = -2
Query:    2 QKRLRRENAHCSTKEMLQSSPCHIWNIRRNNAIRETFWNHIRSYK*HQ 145
            QKRL  EN HCSTKEMLQSSPCHI NIRRNNAIRETFWNHIRSYK*HQ
Sbjct:   45 QKRLCCENTHCSTKEMLQSSPCHIRNIRRNNAIRETFWNHIRSYK*HQ 188

HSP 6 
Score: 100.499 bits (213), Expect = 7.63422e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3
Query:    3 *CHL*DLMWFQKVSLIALFLRMFHI*HGEL*SISLVEQWAFSRRKRF*I 149
            *CHL*DLMWFQKVSLIALFLRMF I*HGEL*SISLVEQW FS+ KRF*+
Sbjct:   41 *CHL*DLMWFQKVSLIALFLRMFLI*HGEL*SISLVEQWVFSQHKRF*V 187

Blast Hits to Populus Trichocarpa Proteins

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_PopulusProt_JamboreeModels1_1)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
gw1.86.199.14.64495e-6975.78%
jgi|Poptr1_1|297308|gw1.86.199.1
HSP 1 
Score: 242.662 bits (618), Expect = 4.64495e-69
Identity = 122/161 (75.78%), Postives = 127/161 (78.88%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            LM F+RSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTT+TLLNSVGVS++ A  GAVAINWILKDGAGRVGKML+ARQGKKFDYDLKQLRF GD                PHLFLPL             TSTSTRTPIYKAFAKGENIGDVTAK
Sbjct:    5 LMGFIRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTKTLLNSVGVSKSQAIPGAVAINWILKDGAGRVGKMLYARQGKKFDYDLKQLRFAGDLLMELGAAVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKGENIGDVTAK 165

HSP 2 
Score: 35.039 bits (79), Expect = 4.64495e-69
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGN+ADLLGTG
Sbjct:  165 KGECVGNVADLLGTG 179

estExt_Genewise1_v1.C_LG_V12251.91319e-1933.96%
jgi|Poptr1_1|715164|estExt_Genewise1_v1.C_LG_V1225
HSP 1 
Score: 92.0485 bits (227), Expect = 1.91319e-19
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    8 SFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            SF+  +  P G+P SV   Y+ Y  +RAL+HF   A+ V +TQ+LL + G+    A   A A++WILKDG    GK++ +  G + D + K+ R   D                PHLFL +              + +TR PIY +FAK  N+ D+ AK
Sbjct:   61 SFLNKFF-PSGYPYSVNEGYLRYTQFRALQHFSSAALSVLSTQSLLFAAGLRPTPAQ--ATAVSWILKDGMQHAGKLICSNLGARMDSEPKRWRILADVLYDLGTGLEVLSPLCPHLFLEVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAK 216

gw1.II.2098.18.88713e-1733.11%
jgi|Poptr1_1|410763|gw1.II.2098.1
HSP 1 
Score: 83.1889 bits (204), Expect = 8.88713e-17
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   32 PEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            P G+  SV   Y+ Y  +RAL++F   A+ V +TQ+LL + G+    A   A A++WILKD    VGK++ +  G + D + K  R   D                PHLFL +              + +TR PIY +FAK  N+ D+ AK
Sbjct:   25 PSGYQCSVNEGYLRYTXFRALQYFSRAALSVLSTQSLLFAAGLCPXPAQ--AAAVSWILKDEMQHVGKLICSNLGARMDSEPKHWRILADVLYDLGTGLEVLSPLCPHLFLEVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAK 173

gw1.I.522.15.76047e-1631.93%
jgi|Poptr1_1|171922|gw1.I.522.1
HSP 1 
Score: 80.4925 bits (197), Expect = 5.76047e-16
Identity = 53/166 (31.93%), Postives = 74/166 (44.58%), Query Frame = 2
Query:   11 FVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTS--------TSTRTPIYKAFAKGENIGDVTAK 484
            FVR  ++P+GFP SV   Y+ Y  WRA++       GV  TQ LL +VG+ +  A   A AINW+LKDG G + K++ ++ G+ FD   K  R   D                PHLF+ +                        +TR+  Y  FA   N  +V AK
Sbjct:    8 FVR-LMLPQGFPRSVTSDYLDYSLWRAVQGIASQISGVLATQALLYAVGLGKG-AIPTAAAINWVLKDGIGYLSKIVLSKYGRHFDVHPKGWRLFADLLENAAFGLEMLTPAFPHLFVFIGATAGAGRSAAALIQAISCXLNYAATRSCFYAGFAAQRNFAEVIAK 171

fgenesh4_pg.C_LG_VII0009751.08638e-1428.37%
jgi|Poptr1_1|764630|fgenesh4_pg.C_LG_VII000975
HSP 1 
Score: 76.2554 bits (186), Expect = 1.08638e-14
Identity = 40/141 (28.37%), Postives = 69/141 (48.94%), Query Frame = 2
Query:   74 YMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLF-ARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAKRRM 493
            Y+ W+ L   F  A+ V  TQ +  ++G+  + +   A A+NW+LKDG GR+ + ++ A     FD +LK++RFT                  P  FL L                +T + ++++FA  +NIG+V+AK ++
Sbjct:    3 YVKWKFLHRVFSSALQVLATQAMFRAIGIGYSRSLPSAAALNWVLKDGLGRLSRCIYTASLASAFDTNLKRVRFTTSVLFSLSIGIELLTPTFPQYFLLLATLANIAKQISLACYLATGSAVHRSFAIADNIGEVSAKAQI 143

estExt_fgenesh4_pg.C_LG_VI08025.96115e-1329.24%
jgi|Poptr1_1|819210|estExt_fgenesh4_pg.C_LG_VI0802
HSP 1 
Score: 70.4774 bits (171), Expect = 5.96115e-13
Identity = 50/171 (29.24%), Postives = 69/171 (40.35%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGV---SRNXATXGAVAINWILKDGAGRVGKMLF-ARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAKRRMCWE 502
            L   ++ +++P GFP SV   Y+ YM  +   +  G       T +LL +VG    +   A   A AI W+ KDG G +G++    R G  FD D KQ R   D                P  FLPL                 +   I   FA   N+G+V AK  + WE
Sbjct:   98 LPDILKDFILPAGFPGSVSDDYLQYMVLQFPTNITGWICHTLVTSSLLKAVGAGSFTGTDAAASAAAIRWVSKDGIGALGRLFIGGRFGDLFDDDPKQWRMYADFIGSAGSIFDLTTQVYPAYFLPLASLGNLTKAVARGLKDPSFRVIQNHFAVSGNLGEVAAKEEV-WE 267

gw1.44.151.12.50451e-1139.78%
jgi|Poptr1_1|288938|gw1.44.151.1
HSP 1 
Score: 65.0846 bits (157), Expect = 2.50451e-11
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 2
Query:   11 FVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLR 289
            FVR  ++P+GFP SV   Y+ Y  WRA++       GV TTQ LL + G+ R      A AI W+ KDG G + K++ ++ G  FD   K  R
Sbjct:    5 FVR-LMLPQGFPHSVTFDYLDYSLWRAVQGIASQVSGVLTTQALLYADGL-RKGVIPMAAAIKWVRKDGIGYIXKIILSKYGXHFDVHPKGWR 95

Blast Hits to Contig V2 RO454

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig4815_v27.35704e-2967.16%
RO454_contig4815_v2
HSP 1 
Score: 104.622 bits (222), Expect = 7.35704e-29
Identity = 45/67 (67.16%), Postives = 45/67 (67.16%), Query Frame = -2
Query:  299 PTHSPFSSYIPYVFSFGKGFVNWCTS*C*CYXXXXXXXXXXXSQRKKKVWHSCSCQLHXSTQLXKEI 499
            P    FSSYIP VFS GKGFVN CTS*C*CY           SQRKKKVWH CSCQLH  TQL KEI
Sbjct:  191 PNTFSFSSYIPDVFSXGKGFVNXCTS*C*CYSSHTLYYVSSTSQRKKKVWHGCSCQLHTKTQLHKEI 391

HSP 2 
Score: 37.724 bits (76), Expect = 7.35704e-29
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  483 PSSQQICNIPNTFSF 527
            PSSQ ICNIPNTFSF
Sbjct:  164 PSSQXICNIPNTFSF 208

HSP 3 
Score: 103.248 bits (219), Expect = 2.31524e-27
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = -1
Query:  348 *QLHPLCFLLWQRLCKLVYELMLMLQQPHSLXR*QHKPKEEKGVA 482
            *QLHP CFLLWQRLCKL YELMLMLQQPHSL R*QHKPKEEKGVA
Sbjct:  208 *QLHPRCFLLWQRLCKLXYELMLMLQQPHSLLR*QHKPKEEKGVA 342

HSP 4 
Score: 34.0583 bits (68), Expect = 2.31524e-27
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = -2
Query:  467 PVPSRSAIFPTHSPFSSYIP 526
            PVP RSA FPTHSP +   P
Sbjct:  165 PVPXRSAXFPTHSPLAVTSP 224

HSP 5 
Score: 83.5449 bits (176), Expect = 5.20736e-23
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:  337 NCSCATPFSSFGLXXXXXXXXXXXNININSYTNLQSLCQRRKHRGCNC*K 486
            NCS ATPFSSFGL           NININSY NLQSLC RRKHRGCNC*+
Sbjct:  204 NCSRATPFSSFGLCC*RSKECGCCNININSYXNLQSLCXRRKHRGCNC*R 353

HSP 6 
Score: 39.0986 bits (79), Expect = 5.20736e-23
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  485 RRMCWEYCRSAGNW 526
            RRMCWE CRS GNW
Sbjct:  165 RRMCWEXCRSXGNW 206

HSP 7 
Score: 89.5016 bits (189), Expect = 3.40073e-22
Identity = 44/62 (70.97%), Postives = 45/62 (72.58%), Query Frame = -3
Query:  298 LAVTSPMFSPLAKAL*IGVRXXXXXXXXXXXXTLAAQAKGRKRCGTAAVANSTXAPNSXRRS 483
            LAVTSPMFSP AKAL*I VR            TLAAQAKGRKRCGTAAVANST  PNS +RS
Sbjct:  207 LAVTSPMFSPXAKAL*IXVRVDVDVTAATLFTTLAAQAKGRKRCGTAAVANSTPRPNSIKRS 392

HSP 8 
Score: 30.3927 bits (60), Expect = 3.40073e-22
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  484 QFPADLQYSQHILL 525
            QFP DLQ SQHILL
Sbjct:  166 QFPXDLQXSQHILL 207

HSP 9 
Score: 66.5912 bits (139), Expect = 1.89267e-17
Identity = 30/45 (66.67%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  350 PHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            PHLFLPL             TSTSTRT IYKAFA GENIGDVTAK
Sbjct:  206 PHLFLPLACAANVVKSVAAVTSTSTRTXIYKAFAXGENIGDVTAK 340

HSP 10 
Score: 37.2658 bits (75), Expect = 1.89267e-17
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGN ADLLGTG
Sbjct:  164 KGECVGNXADLLGTG 208

Blast Hits to TAIR7 Peptides

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_TAIR7_pep_20070425)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AT5G49820.1 5.19099e-6674.84%
EMB1879 (EMBRYO DEFECTIVE 1879) | chr5:20263979-20266658 REVERSE
HSP 1 
Score: 232.646 bits (592), Expect = 5.19099e-66
Identity = 119/159 (74.84%), Postives = 121/159 (76.10%), Query Frame = 2
Query:    8 SFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            SF+RSYVVPEGFP SV  SYVPYMTWRALKHFFGGAMGVFTTQTLLNSVG SRN +   AVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRF GD                PHLFLPL             TSTSTRTPIYKAFAKGENIGDVTAK
Sbjct:  106 SFLRSYVVPEGFPGSVNESYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGASRNSSASAAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVVKNVAAVTSTSTRTPIYKAFAKGENIGDVTAK 264

HSP 2 
Score: 34.6538 bits (78), Expect = 5.19099e-66
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  483 KGECVGNIADLLGTG 527
            KGECVGNIADL+GTG
Sbjct:  264 KGECVGNIADLMGTG 278

AT2G31190.1 8.04264e-2033.96%
similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to Os04g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053319.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE91893.1); similar to OSJNBa0073E02.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05447.3); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968); contains InterPro domain Virus capsid protein, alpha-helical; (InterPro:IPR008935) | chr2:13298535-13300758 REVERSE
HSP 1 
Score: 93.2041 bits (230), Expect = 8.04264e-20
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    8 SFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            SF+  +  P G+P SV   Y+ Y  +RAL+HF   A+ V +TQ+LL + G+    A   A  ++WILKDG   VGK++ +  G + D + K+ R   D                PHLFL +              + +TR PIY +FAK  N+ D+ AK
Sbjct:   66 SFLNKFF-PSGYPYSVNEGYLRYTQFRALQHFSSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADVLYDLGTGLELVSPLCPHLFLEMAGLGNFAKGMATVAARATRLPIYSSFAKEGNLSDIFAK 221

AT3G45890.1 8.32283e-1729.56%
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13770.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE84675.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE92087.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) | chr3:16882682-16885085 FORWARD
HSP 1 
Score: 83.1889 bits (204), Expect = 8.32283e-17
Identity = 47/159 (29.56%), Postives = 72/159 (45.28%), Query Frame = 2
Query:    8 SFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            + +  +++PEGFP+SV   Y+ Y  WR ++       GV  TQ+LL +VG+ +  A   A AINW+LKDG G + K++ ++ G+ FD   K  R   D                P  F+ +                +TR+     FA   N  +V AK
Sbjct:  192 NLLTQFLLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLGKG-AIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVHPKGWRLFADLLENAAFGMEMLTPVFPQFFVMIGAAAGAGRSAAALIQAATRSCFNAGFASQRNFAEVIAK 349

AT2G23470.1 5.3947e-1627.15%
similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to putative glutamate/ornithine acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55003.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) | chr2:10006185-10008478 REVERSE
HSP 1 
Score: 80.4925 bits (197), Expect = 5.3947e-16
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   44 PDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLF-ARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAKRRM 493
            P  V  +Y+ Y+ W+ L   F  A+ V  TQ +  ++G+ ++ +   + A NWILKDG GR+ + ++ A     FD +LK++RF+                  P  FL L                +T + ++++FA  +N+G+V+AK ++
Sbjct:  125 PKQVSDNYISYVKWKFLHRVFSSALQVLATQAMFRAIGIGQSRSLASSAAFNWILKDGLGRLSRCIYTASLASAFDTNLKRVRFSTSVLFSLSIGVELMTPVFPQYFLLLASIANIAKQISLSCYLATGSAVHRSFAVADNLGEVSAKAQI 275

AT5G01510.1 1.0174e-1432.00%
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45890.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE84675.1); similar to Os01g0141600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041984.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) | chr5:201701-205150 FORWARD
HSP 1 
Score: 76.2554 bits (186), Expect = 1.0174e-14
Identity = 56/175 (32.00%), Postives = 71/175 (40.57%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGV-------SRNXATXGAVAINWILKDGAGRVGKMLF-ARQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAKRRMCWE 502
            L   VR +V P GFP SV   Y+ YM W+   +  G    V  T +LL +VGV       +   A   A AI W+ KDG G +G++L   R G  FD D KQ R   D                P  FL L                 +   I   FA   N+G+V AK  + WE
Sbjct:  111 LPDVVRDFVFPSGFPGSVSDDYLDYMLWQFPTNITGWICNVLVTSSLLKAVGVGSFSGTSAAATAAASAAAIRWVSKDGIGALGRLLIGGRFGSLFDDDPKQWRMYADFIGSAGSFFDLATQLYPSQFLLLASTGNLAKAVARGLRDPSFRVIQNHFAISGNLGEVAAKEEV-WE 284

AT1G13770.1 5.04928e-1429.41%
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45890.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94623.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) | chr1:4721714-4724342 FORWARD
HSP 1 
Score: 73.9442 bits (180), Expect = 5.04928e-14
Identity = 45/153 (29.41%), Postives = 64/153 (41.83%), Query Frame = 2
Query:   29 VPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGAVAINWILKDGAGRVGKMLFA-RQGKKFDYDLKQLRFTGDXXXXXXXXXXXXXXXXPHLFLPLXXXXXXXXXXXXXTSTSTRTPIYKAFAKGENIGDVTAK 484
            VPEGFP SV P YV +  W  L+        + +TQ LL+++GV    AT       W L+D  G +G +LF   QG   D + K  R   D                P  F+ +              S +TR  + + FA  +N  D++AK
Sbjct:   58 VPEGFPGSVTPDYVGFQLWDTLQGLSTYTKMMLSTQALLSAIGVGEKSATVIGATFQWFLRDFTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDIGMLMDLLSPLFPSAFIVVVCLGSLSRSFTGVASGATRAALTQHFALQDNAADISAK 210

Blast Hits to Contigs V2 WO454

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig7907_v25.08631e-4287.30%
WO454_contig7907_v2
HSP 1 
Score: 126.616 bits (270), Expect = 5.08631e-42
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = -3
Query:  181 KGRKRCGTAAVANSTXAPNSXRRSPVNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLIATAP 369
            K  KRCGTAAVANST  PNS RRS  NRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQL+ATAP
Sbjct:   68 KEEKRCGTAAVANSTPXPNSIRRSXXNRSCFKS*SNFFPXRAKSIFPTRPAPSLRIQLVATAP 256

HSP 2 
Score: 58.8016 bits (122), Expect = 5.08631e-42
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -1
Query:  357 LVYELMLMLQQPHSLXR*QHKPKEEK 434
            L+YELMLMLQQPHSLXR*QHKPKEEK
Sbjct:    2 LLYELMLMLQQPHSLXR*QHKPKEEK 79

HSP 3 
Score: 112.412 bits (239), Expect = 2.51037e-29
Identity = 46/60 (76.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  181 WXCCY*LDSQGWCWSCWENAFCPXRKEV*L*XKTATIYG*SPXXXXXXXXXXNCSCATPF 360
            W CCY*LDSQGWCWSCWENAFCPXRKEV*L* KTATI  *SP    X     NCS ATPF
Sbjct:   77 WSCCY*LDSQGWCWSCWENAFCPXRKEV*L*FKTATIXX*SPYGVGXWCGVGNCSXATPF 256

HSP 4 
Score: 30.3927 bits (60), Expect = 2.51037e-29
Identity = 15/26 (57.69%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  358 FSSFGLXXXXXXXXXXXNININSYTN 435
            FSSFGL    X      NININSY+N
Sbjct:    1 FSSFGLCC*RXKECGCCNININSYSN 78

HSP 5 
Score: 88.127 bits (186), Expect = 7.60504e-22
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = -2
Query:  206 KKKVWHSCSCQLHXSTQLXKEITRKS*LF*XIIXXXXXXXXKHFPNTTSTILE 364
            +KKVWH CSCQLH  TQL KEITRKS*LF* II     X  KHFPNTTSTILE
Sbjct:   73 RKKVWHXCSCQLHTXTQLHKEITRKS*LF*IIIKLLSLXGKKHFPNTTSTILE 231

HSP 6 
Score: 29.4763 bits (58), Expect = 7.60504e-22
Identity = 16/25 (64.00%), Postives = 16/25 (64.00%), Query Frame = -2
Query:  356 CTS*C*CYXXXXXXXXXXXSQRKKK 430
            CTS*C*CY   X  X    SQRKKK
Sbjct:    6 CTS*C*CYSSHXLYXVSSTSQRKKK 80

HSP 7 
Score: 90.8762 bits (192), Expect = 2.3656e-20
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 2
Query:  182 GAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFTGD 301
            GAVA NWILKDGAGRVGKMLFARQGKKFDYDLKQLRF  D
Sbjct:  136 GAVATNWILKDGAGRVGKMLFARQGKKFDYDLKQLRFXXD 255

HSP 8 
Score: 21.6867 bits (41), Expect = 2.3656e-20
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 2
Query:  359 FLPLXXXXXXXXXXXXXTSTSTRT 430
            FLPL        X    TSTSTRT
Sbjct:    6 FLPLACAANVVKXVAAVTSTSTRT 77

HSP 9 
Score: 84.4613 bits (178), Expect = 7.3337e-19
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  180 GDHP*IVAVLXHNQTSFLXGQKAFSQHDQHHP*ESS**QQXQ 305
            GDH  IVAVL HNQTSFLXGQKAFSQHDQHHP*ESS**QQ Q
Sbjct:  132 GDHXXIVAVLNHNQTSFLXGQKAFSQHDQHHP*ESS**QQLQ 257

HSP 10 
Score: 23.0613 bits (44), Expect = 7.3337e-19
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = -3
Query:  355 LAAQAKGRKR 384
            LAAQAKGRK+
Sbjct:   52 LAAQAKGRKK 81

HSP 11 
Score: 74.3807 bits (156), Expect = 2.51541e-14
Identity = 36/51 (70.59%), Postives = 36/51 (70.59%), Query Frame = 3
Query:  201 GFSRMVLVVLGKCFLPXKERSLIMX*NSYDLRVIXXXXXXXXXXXXXXXCH 353
            GFSRMVLVVLGKCFLPXKERSLIM *NSYDLRVI              XCH
Sbjct:   84 GFSRMVLVVLGKCFLPXKERSLIMI*NSYDLRVISLWSWVLVWSWQLQXCH 236

WO454_contig6803_v21.97983e-3588.71%
WO454_contig6803_v2
HSP 1 
Score: 144.487 bits (309), Expect = 1.97983e-35
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    4 DVICKILCGSRRFP**RYSFVCSIYDMESFEAFLWWSNGRFHDANAFEFSWSL*KPSNXWXC 189
            DVICKILCGSRRFP**RYSFVCS+YDMESFEAFLWWSNG FH+ NAFEFSWSL*KP N W C
Sbjct:    1 DVICKILCGSRRFP**RYSFVCSLYDMESFEAFLWWSNGCFHNTNAFEFSWSL*KPXNSWSC 186

HSP 2 
Score: 143.57 bits (307), Expect = 3.73678e-35
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 2
Query:    2 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNXATXGA 187
            LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLL+SVGVSRN AT GA
Sbjct:    3 LMSFVRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLSSVGVSRNRATPGA 188

HSP 3 
Score: 138.53 bits (296), Expect = 1.22964e-33
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = -3
Query:    1 TAPXVAXFLETPTEFKSVCVVKTPIAPPKKCFKALHVIYGTYEGITLSGKPSGTT*DLTNDIK 189
            TAP VA FLETPTE KSVCVVKTPIAPPKKCFKALHVI GTYEGITLSGKPSGTT*DLTNDI+
Sbjct:    1 TAPGVARFLETPTELKSVCVVKTPIAPPKKCFKALHVI*GTYEGITLSGKPSGTT*DLTNDIR 189

HSP 4 
Score: 123.867 bits (264), Expect = 3.1892e-29
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = -1
Query:    3 QXQXLLGF*RLQLNSKAFAS*KRPLLHQRNASKLSMSYMEHTKE*RYQGNLLEPHKILQMTS 188
            Q Q L GF*RLQLNSKAF  *K PLLHQRNASKLSMSY EHTKE*RYQGNLLEPHKILQMTS
Sbjct:    2 QLQELXGF*RLQLNSKAFVL*KHPLLHQRNASKLSMSYKEHTKE*RYQGNLLEPHKILQMTS 187

HSP 5 
Score: 109.205 bits (232), Expect = 8.27152e-25
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = -2
Query:    2 QKRLRRENAHCSTKEMLQSSPCHIWNIRRNNAIRETFWNHIRSYK*HQ 145
            QKRL  EN HCSTKEMLQSSPCHI NIRRNNAIRETFWNHIRSYK*HQ
Sbjct:   45 QKRLCCENTHCSTKEMLQSSPCHIRNIRRNNAIRETFWNHIRSYK*HQ 188

HSP 6 
Score: 100.499 bits (213), Expect = 3.45415e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3
Query:    3 *CHL*DLMWFQKVSLIALFLRMFHI*HGEL*SISLVEQWAFSRRKRF*I 149
            *CHL*DLMWFQKVSLIALFLRMF I*HGEL*SISLVEQW FS+ KRF*+
Sbjct:   41 *CHL*DLMWFQKVSLIALFLRMFLI*HGEL*SISLVEQWVFSQHKRF*V 187

WO454_contig14519_v24.26837e-13100.00%
WO454_contig14519_v2
HSP 1 
Score: 45.0554 bits (92), Expect = 4.26837e-13
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  485 RRMCWEYCRSAGNW 526
            RRMCWEYCRSAGNW
Sbjct:   47 RRMCWEYCRSAGNW 88

HSP 2 
Score: 43.2225 bits (88), Expect = 4.26837e-13
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  439 QSLCQRRKHRGCNC*K 486
            QSLCQRRKHRGCNC*+
Sbjct:    2 QSLCQRRKHRGCNC*R 49

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