CC454_contig945_v2

NameCC454_contig945_v2
AccessionID2236977
Sequence
CTCTCTCTCTCTTTCTCTGTCACGCGCGGACACACACTCAGACACGCTTT
CTCTCTCTTTCTGTCTTAGTTGGTTTTTCTTTCAAAGTTTGTGCCTTTTA
CTTTGRAAAAAAAATCTGGGTTTTTGttTTTTCCGGCAACCTGGATCAGA
ATCCGGTGAAATTGGCAGAAATCCCGGCAACCCGTTTCGGATTTGGAGCC
ACTCGGATCAAATCTGGATAtTTTTTTGGaAAAAAATCCAACATTGACAT
TTTTTGACGTTGTATGAGATAAACCCACAAGACAAGTTTTTAAGTTTATG
AGTGACCTGATGAAATAGA
Length319
Typecontig
Organism Chinese Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
microsatellite CC454_contig945_v2-ssr1 0 12 0
EST CCMHS_115544_2982_2557 0-298
EST CCMHS_121106_2865_3074 32-319

InterProScan Analysis

Analysis Date: 02-12-2010 (Interpro: CC454_contigs_v2)
SEQUENCE: CC454_contig945_v2_2_ORF1 CRC64: 411A7B25B0A8720D LENGTH: 81 aa
noIPR
unintegrated
unintegrated
seg [16-35]? NA seg seg seg
SEQUENCE: CC454_contig945_v2_3_ORF1 CRC64: AADF098A41F32716 LENGTH: 84 aa
No hits reported.
SEQUENCE: CC454_contig945_v2_6_ORF1 CRC64: BD8FBDEE2681B99A LENGTH: 83 aa
No hits reported.
SEQUENCE: CC454_contig945_v2_2_ORF1 CRC64: 411A7B25B0A8720D LENGTH: 81 aa
noIPR
unintegrated
unintegrated
SEGseg seg
 NA [16-35]?       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none
SEQUENCE: CC454_contig945_v2_3_ORF1 CRC64: AADF098A41F32716 LENGTH: 84 aa
No hits reported.
SEQUENCE: CC454_contig945_v2_6_ORF1 CRC64: BD8FBDEE2681B99A LENGTH: 83 aa
No hits reported.

Blast Hits to Contigs V2 CCall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig1014_v27.18844e-71100.00%
CCall_contig1014_v2
HSP 1 
Score: 262.704 bits (567), Expect = 7.18844e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = -2
Query:    1 LFHQVTHKLKNLSCGFISYNVKKCQCWIFFQKNIQI*SEWLQIRNGLPGFLPISPDSDPGCRKKQKPRFFFQSKRHKL*KKNQLRQKERESVSECVSARDRERERE 318
            LFHQVTHKLKNLSCGFISYNVKKCQCWIFFQKNIQI*SEWLQIRNGLPGFLPISPDSDPGCRKKQKPRFFFQSKRHKL*KKNQLRQKERESVSECVSARDRERERE
Sbjct:    1 LFHQVTHKLKNLSCGFISYNVKKCQCWIFFQKNIQI*SEWLQIRNGLPGFLPISPDSDPGCRKKQKPRFFFQSKRHKL*KKNQLRQKERESVSECVSARDRERERE 318

HSP 2 
Score: 253.082 bits (546), Expect = 5.66577e-68
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = -3
Query:    3 YFIRSLINLKTCLVGLSHTTSKNVNVGFFSKKISRFDPSGSKSETGCRDFCQFHRILIQVAGKNKNPDFFXKVKGTNFERKTN*DRKREKACLSVCPRVTEKERE 317
            YFIRSLINLKTCLVGLSHTTSKNVNVGFFSKKISRFDPSGSKSETGCRDFCQFHRILIQVAGKNKNPDFFXKVKGTNFERKTN*DRKREKACLSVCPRVTEKERE
Sbjct:    3 YFIRSLINLKTCLVGLSHTTSKNVNVGFFSKKISRFDPSGSKSETGCRDFCQFHRILIQVAGKNKNPDFFXKVKGTNFERKTN*DRKREKACLSVCPRVTEKERE 317

HSP 3 
Score: 247.584 bits (534), Expect = 2.56138e-66
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 3
Query:    3 LSLFLCHARTHTQTRFLSLSVLVGFSFKVCAFYFXKKIWVFVFSGNLDQNPVKLAEIPATRFGFGATRIKSGYFFGKKSNIDIF*RCMR*THKTSF*VYE*PDEI 317
            LSLFLCHARTHTQTRFLSLSVLVGFSFKVCAFYFXKKIWVFVFSGNLDQNPVKLAEIPATRFGFGATRIKSGYFFGKKSNIDIF*RCMR*THKTSF*VYE*PDEI
Sbjct:    3 LSLFLCHARTHTQTRFLSLSVLVGFSFKVCAFYFXKKIWVFVFSGNLDQNPVKLAEIPATRFGFGATRIKSGYFFGKKSNIDIF*RCMR*THKTSF*VYE*PDEI 317

HSP 4 
Score: 178.394 bits (383), Expect = 8.65754e-52
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 2
Query:  107 KKNLGFCFFRQPGSESGEIGRNPGNPFRIWSHSDQIWIFFWKKIQH*HFLTLYEINPQDKFLSL*VT**NR 319
            KKNLGFCFFRQPGSESGEIGRNPGNPFRIWSHSDQIWIFFWKKIQH*HFLTLYEINPQDKFLSL*VT**NR
Sbjct:  107 KKNLGFCFFRQPGSESGEIGRNPGNPFRIWSHSDQIWIFFWKKIQH*HFLTLYEINPQDKFLSL*VT**NR 319

HSP 5 
Score: 39.5569 bits (80), Expect = 8.65754e-52
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 1
Query:    1 LSLSFSVTRGHTLRHA 48
            LSLSFSVTRGHTLRHA
Sbjct:    1 LSLSFSVTRGHTLRHA 48

HSP 6 
Score: 176.561 bits (379), Expect = 5.21179e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1
Query:   94 PFTLXKKSGFLFFPATWIRIR*NWQKSRQPVSDLEPLGSNLDIFLEKNPTLTFFDVV*DKPTRQVFKFMSDLMK* 318
            PFTLXKKSGFLFFPATWIRIR*NWQKSRQPVSDLEPLGSNLDIFLEKNPTLTFFDVV*DKPTRQVFKFMSDLMK*
Sbjct:   94 PFTLXKKSGFLFFPATWIRIR*NWQKSRQPVSDLEPLGSNLDIFLEKNPTLTFFDVV*DKPTRQVFKFMSDLMK* 318

HSP 7 
Score: 35.433 bits (71), Expect = 5.21179e-50
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:    2 SLSLSLSRADTHSDT 46
            SLSLSLSRADTHSDT
Sbjct:    2 SLSLSLSRADTHSDT 46

HSP 8 
Score: 159.607 bits (342), Expect = 7.79651e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = -1
Query:  113 SISSGHS*T*KLVLWVYLIQRQKMSMLDFFPKKYPDLIRVAPNPKRVAGISANFTGF*SRLPEKTKTQI 319
            SISSGHS*T*KLVLWVYLIQRQKMSMLDFFPKKYPDLIRVAPNPKRVAGISANFTGF*SRLPEKTKTQI
Sbjct:  113 SISSGHS*T*KLVLWVYLIQRQKMSMLDFFPKKYPDLIRVAPNPKRVAGISANFTGF*SRLPEKTKTQI 319

Blast Hits to Contig V2 Oall

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig581_v28.84038e-3585.42%
Oall_contig581_v2
HSP 1 
Score: 101.873 bits (216), Expect = 8.84038e-35
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = -2
Query:   91 FFQKNIQI*SEWLQIRNGLPGFLPISPDSDPGCRKKQKPRFFFQSKRH 234
            F +KN+QI*SEWLQIRNGL GFLPIS DSDPGCRKKQKPR FFQS+RH
Sbjct:    1 FPKKNVQI*SEWLQIRNGLLGFLPISLDSDPGCRKKQKPRIFFQSERH 144

HSP 2 
Score: 40.9315 bits (83), Expect = 8.84038e-35
Identity = 15/23 (65.22%), Postives = 16/23 (69.57%), Query Frame = -2
Query:  223 KNLSCGFISYNVKKCQCWIFFQK 291
            K    GFI  NVKKC+CWIFF K
Sbjct:  136 KTCLVGFILNNVKKCKCWIFFPK 204

HSP 3 
Score: 34.0583 bits (68), Expect = 8.84038e-35
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = -2
Query:  271 FHQVTHKLKNLSCGF 315
            F  VTHKLKNLSCGF
Sbjct:  185 FITVTHKLKNLSCGF 229

HSP 4 
Score: 97.2911 bits (206), Expect = 1.2915e-30
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:   93 AFYFXKKIWVFVFSGNLDQNPVKLAEIPATRFGFGATRIKSGYFFGKKSN 242
            AF+F KK WVFVFSGN  QNPVKLAEIPAT FGFGATRIKSG+FF +K +
Sbjct:    3 AFHFEKKFWVFVFSGNPGQNPVKLAEIPATHFGFGATRIKSGHFFWEKKS 152

HSP 5 
Score: 35.433 bits (71), Expect = 1.2915e-30
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  223 FLEKNPTLTFFDVV*DKPTRQVF 291
            F +KNPT TFFDVV*DK  +  F
Sbjct:  136 FGKKNPTFTFFDVV*DKTHKTSF 204

HSP 6 
Score: 29.9345 bits (59), Expect = 1.2915e-30
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  271 KPTRQVFKFMSD 306
            KPTRQVF+FMSD
Sbjct:  185 KPTRQVFEFMSD 220

HSP 7 
Score: 97.2911 bits (206), Expect = 3.27694e-30
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 2
Query:  107 KKNLGFCFFRQPGSESGEIGRNPGNPFRIWSHSDQIWIFFWKK 235
            KK LGFCFFRQPGSES EIGRNP NPFRIWSHSDQIW FF  K
Sbjct:   17 KKILGFCFFRQPGSESSEIGRNPSNPFRIWSHSDQIWTFFLGK 145

HSP 8 
Score: 34.5166 bits (69), Expect = 3.27694e-30
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  221 FFWKKIQH*HFLTLYEINP 277
            F  KKIQH HFLTL++I P
Sbjct:  134 FLGKKIQHLHFLTLFKIKP 190

HSP 9 
Score: 29.4763 bits (58), Expect = 3.27694e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  273 THKTSF*VYE*P 308
            THKTSF*VYE*P
Sbjct:  187 THKTSF*VYE*P 222

HSP 10 
Score: 95.0001 bits (201), Expect = 5.34522e-29
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   94 PFTLXKKSGFLFFPATWIRIR*NWQKSRQPVSDLEPLGSNLDIFLEK 234
            PFTL K SGFLFFPAT +RI+*NWQKS+QP+SDLEPLGSNLDIF  K
Sbjct:    4 PFTLKKNSGFLFFPATRVRIQ*NWQKSQQPISDLEPLGSNLDIFFGK 144

HSP 11 
Score: 33.1419 bits (66), Expect = 5.34522e-29
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  219 YFFGKKSNIDIF*RCMR*THKTSF 290
            +F+ KKSNI IF*RC+R*  +  F
Sbjct:  132 FFWEKKSNIYIF*RCLR*NPQDKF 203

HSP 12 
Score: 29.0181 bits (57), Expect = 5.34522e-29
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  272 NPQDKFLSL*VT 307
            NPQDKFLSL*VT
Sbjct:  186 NPQDKFLSL*VT 221

HSP 13 
Score: 99.124 bits (210), Expect = 4.76698e-26
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = -3
Query:   93 FFSKKISRFDPSGSKSETGCRDFCQFHRILIQVAGKNKNPDFFXKVKG 236
            FF KK+SRFDPSGSKSE GC DFCQFH IL +VAGKNKNP+FF KVKG
Sbjct:    3 FFPKKMSRFDPSGSKSEMGCWDFCQFHWILTRVAGKNKNPEFFFKVKG 146

HSP 14 
Score: 32.2255 bits (64), Expect = 4.76698e-26
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3
Query:  222 KTCLVGLSHTTSKNVNVGFFSKK 290
            K  L  LS TTSKNVNVGFF  K
Sbjct:  135 KLVLWVLS*TTSKNVNVGFFFPK 203

HSP 15 
Score: 76.6717 bits (161), Expect = 5.51409e-19
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = -1
Query:  116 FFPKKYPDLIRVAPNPKRVAGISANFTGF*SRLPEKTKTQ 235
            F  KK PDLIRVAPNPK VAGISANFTGF*  LPEKTKTQ
Sbjct:   26 FSQKKCPDLIRVAPNPKWVAGISANFTGF*PGLPEKTKTQ 145

HSP 16 
Score: 30.8509 bits (61), Expect = 5.51409e-19
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -1
Query:  221 YLIQRQKMSMLDFFPKK 271
            YL QRQKM MLDFF +K
Sbjct:  134 YLKQRQKM*MLDFFSQK 184

Blast Hits to Contigs V2 WO454

Analysis Date: 11-17-2009 (Blast: CC454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
WO454_contig247_v24.40313e-3585.42%
WO454_contig247_v2
HSP 1 
Score: 101.873 bits (216), Expect = 4.40313e-35
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = -2
Query:   91 FFQKNIQI*SEWLQIRNGLPGFLPISPDSDPGCRKKQKPRFFFQSKRH 234
            F +KN+QI*SEWLQIRNGL GFLPIS DSDPGCRKKQKPR FFQS+RH
Sbjct:    1 FPKKNVQI*SEWLQIRNGLLGFLPISLDSDPGCRKKQKPRIFFQSERH 144

HSP 2 
Score: 40.9315 bits (83), Expect = 4.40313e-35
Identity = 15/23 (65.22%), Postives = 16/23 (69.57%), Query Frame = -2
Query:  223 KNLSCGFISYNVKKCQCWIFFQK 291
            K    GFI  NVKKC+CWIFF K
Sbjct:  136 KTCLVGFILNNVKKCKCWIFFPK 204

HSP 3 
Score: 34.0583 bits (68), Expect = 4.40313e-35
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = -2
Query:  271 FHQVTHKLKNLSCGF 315
            F  VTHKLKNLSCGF
Sbjct:  185 FITVTHKLKNLSCGF 229

HSP 4 
Score: 97.2911 bits (206), Expect = 6.43934e-31
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:   93 AFYFXKKIWVFVFSGNLDQNPVKLAEIPATRFGFGATRIKSGYFFGKKSN 242
            AF+F KK WVFVFSGN  QNPVKLAEIPAT FGFGATRIKSG+FF +K +
Sbjct:    3 AFHFEKKFWVFVFSGNPGQNPVKLAEIPATHFGFGATRIKSGHFFWEKKS 152

HSP 5 
Score: 35.433 bits (71), Expect = 6.43934e-31
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  223 FLEKNPTLTFFDVV*DKPTRQVF 291
            F +KNPT TFFDVV*DK  +  F
Sbjct:  136 FGKKNPTFTFFDVV*DKTHKTSF 204

HSP 6 
Score: 29.9345 bits (59), Expect = 6.43934e-31
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  271 KPTRQVFKFMSD 306
            KPTRQVF+FMSD
Sbjct:  185 KPTRQVFEFMSD 220

HSP 7 
Score: 97.2911 bits (206), Expect = 1.63382e-30
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 2
Query:  107 KKNLGFCFFRQPGSESGEIGRNPGNPFRIWSHSDQIWIFFWKK 235
            KK LGFCFFRQPGSES EIGRNP NPFRIWSHSDQIW FF  K
Sbjct:   17 KKILGFCFFRQPGSESSEIGRNPSNPFRIWSHSDQIWTFFLGK 145

HSP 8 
Score: 34.5166 bits (69), Expect = 1.63382e-30
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  221 FFWKKIQH*HFLTLYEINP 277
            F  KKIQH HFLTL++I P
Sbjct:  134 FLGKKIQHLHFLTLFKIKP 190

HSP 9 
Score: 29.4763 bits (58), Expect = 1.63382e-30
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  273 THKTSF*VYE*P 308
            THKTSF*VYE*P
Sbjct:  187 THKTSF*VYE*P 222

HSP 10 
Score: 95.0001 bits (201), Expect = 2.66477e-29
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   94 PFTLXKKSGFLFFPATWIRIR*NWQKSRQPVSDLEPLGSNLDIFLEK 234
            PFTL K SGFLFFPAT +RI+*NWQKS+QP+SDLEPLGSNLDIF  K
Sbjct:    4 PFTLKKNSGFLFFPATRVRIQ*NWQKSQQPISDLEPLGSNLDIFFGK 144

HSP 11 
Score: 33.1419 bits (66), Expect = 2.66477e-29
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  219 YFFGKKSNIDIF*RCMR*THKTSF 290
            +F+ KKSNI IF*RC+R*  +  F
Sbjct:  132 FFWEKKSNIYIF*RCLR*NPQDKF 203

HSP 12 
Score: 29.0181 bits (57), Expect = 2.66477e-29
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  272 NPQDKFLSL*VT 307
            NPQDKFLSL*VT
Sbjct:  186 NPQDKFLSL*VT 221

HSP 13 
Score: 99.124 bits (210), Expect = 2.28431e-26
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = -3
Query:   93 FFSKKISRFDPSGSKSETGCRDFCQFHRILIQVAGKNKNPDFFXKVKG 236
            FF KK+SRFDPSGSKSE GC DFCQFH IL +VAGKNKNP+FF KVKG
Sbjct:    3 FFPKKMSRFDPSGSKSEMGCWDFCQFHWILTRVAGKNKNPEFFFKVKG 146

HSP 14 
Score: 32.2255 bits (64), Expect = 2.28431e-26
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3
Query:  222 KTCLVGLSHTTSKNVNVGFFSKK 290
            K  L  LS TTSKNVNVGFF  K
Sbjct:  135 KLVLWVLS*TTSKNVNVGFFFPK 203

HSP 15 
Score: 76.6717 bits (161), Expect = 2.6415e-19
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = -1
Query:  116 FFPKKYPDLIRVAPNPKRVAGISANFTGF*SRLPEKTKTQ 235
            F  KK PDLIRVAPNPK VAGISANFTGF*  LPEKTKTQ
Sbjct:   26 FSQKKCPDLIRVAPNPKWVAGISANFTGF*PGLPEKTKTQ 145

HSP 16 
Score: 30.8509 bits (61), Expect = 2.6415e-19
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -1
Query:  221 YLIQRQKMSMLDFFPKK 271
            YL QRQKM MLDFF +K
Sbjct:  134 YLKQRQKM*MLDFFSQK 184

tags