AC454_contig30974_v2
| Name | AC454_contig30974_v2 |
|---|---|
| Accession | ID2153097 |
| Sequence | TCGGAATCTCCGGCGTCGTCGACTCCGCCGAGACCGCCGTCGAACGGTAG |
| Length | 532 |
| Type | contig |
| Organism | American Chestnut |
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References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
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Alignment Viewer
ESTs in this contig
| Type | Feature | Position | ||
|---|---|---|---|---|
| EST | ACHS2n_048147_3293_1434 | 0-269 | ||
| EST | ACHS2n_049293_3483_3568 | 0-269 | ||
| EST | ACHS2n_050193_3678_1940 | 0-269 | ||
| microsatellite | AC454_contig30974_v2-ssr141 | 140 | 155 | 0 |
| EST | ACWP1_021588_2170_2029 | 155-426 | ||
| EST | ACHS2n_139300_3426_3265 | 177-317 | ||
| microsatellite | AC454_contig30974_v2-ssr216 | 215 | 227 | 0 |
| microsatellite | AC454_contig30974_v2-ssr247 | 246 | 258 | 0 |
| EST | ACWP2_061087_3451_1519 | 280-532 | ||
| EST | ACHS1n_020699_2587_0937 | 299-446 | ||
| EST | ACHS1n_040090_2270_3805 | 299-446 | ||
| microsatellite | AC454_contig30974_v2-ssr409 | 408 | 420 | 0 |
| microsatellite | AC454_contig30974_v2-ssr485 | 484 | 496 | 0 |
InterProScan Analysis
Analysis Date: 11-03-2009
(Interpro: AC454_contigs_v2)
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Blast Hits to Contigs V2 CC454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig19675_v2 | 1.95857e-13 | 88.89% | ||
CC454_contig19675_v2 | ||||
HSP 1 Score: 54.6777 bits (113), Expect = 1.95857e-13 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 29.9345 bits (59), Expect = 1.95857e-13 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 3 Score: 29.0181 bits (57), Expect = 1.95857e-13 Query: 497 CTRKVEEEIFL 529 | ||||
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Blast Hits to Contigs V2 CCall
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig47742_v2 | 4.52743e-15 | 88.89% | ||
CCall_contig47742_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 4.52743e-15 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 43.6807 bits (89), Expect = 4.52743e-15 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 3 Score: 53.3031 bits (110), Expect = 1.36116e-13 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 4 Score: 41.3897 bits (84), Expect = 1.36116e-13 Query: 116 TTNILVQVPTTTTICVQV 169 HSP 5 Score: 45.9718 bits (94), Expect = 2.49867e-12 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 6 Score: 37.2658 bits (75), Expect = 2.49867e-12 Query: 121 TCTHMVVVVGTCTSML 168 HSP 7 Score: 25.3524 bits (49), Expect = 2.49867e-12 Query: 497 CTRKVEEEIFL 529 | ||||
CCall_contig6670_v2 | 3.33582e-13 | 92.59% | ||
CCall_contig6670_v2 | ||||
HSP 1 Score: 54.6777 bits (113), Expect = 3.33582e-13 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 29.9345 bits (59), Expect = 3.33582e-13 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 3 Score: 29.0181 bits (57), Expect = 3.33582e-13 Query: 497 CTRKVEEEIFL 529 | ||||
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Blast Hits to Contig V2 Oall
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
Oall_contig37149_v2 | 3.39709e-17 | 88.89% | ||
Oall_contig37149_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 3.39709e-17 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 45.9718 bits (94), Expect = 3.39709e-17 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 3 Score: 23.9778 bits (46), Expect = 3.39709e-17 Query: 497 CTRKVEEEIFL 529 HSP 4 Score: 50.5539 bits (104), Expect = 3.25444e-12 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 5 Score: 39.5569 bits (80), Expect = 3.25444e-12 Query: 116 TTNILVQVPTTTTICVQV 169 HSP 6 Score: 45.9718 bits (94), Expect = 1.64457e-11 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 7 Score: 34.9748 bits (70), Expect = 1.64457e-11 Query: 121 TCTHMVVVVGTCTSML 168 HSP 8 Score: 25.3524 bits (49), Expect = 1.64457e-11 Query: 497 CTRKVEEEIFL 529 | ||||
Oall_contig35750_v2 | 2.67808e-13 | 88.89% | ||
Oall_contig35750_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 2.67808e-13 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 39.0986 bits (79), Expect = 2.67808e-13 Query: 121 TCTHMVVVVGTCTSML 168 HSP 3 Score: 50.5539 bits (104), Expect = 6.93718e-11 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 4 Score: 36.3494 bits (73), Expect = 6.93718e-11 Query: 116 TTNILVQVPTTTTICVQV 169 | ||||
Oall_contig7527_v2 | 1.36524e-12 | 88.89% | ||
Oall_contig7527_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 1.36524e-12 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 35.433 bits (71), Expect = 1.36524e-12 Query: 121 TCTHMVVVVGTCTSML 168 | ||||
Oall_contig37551_v2 | 1.83241e-12 | 100.00% | ||
Oall_contig37551_v2 | ||||
HSP 1 Score: 45.9718 bits (94), Expect = 1.83241e-12 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 2 Score: 41.8479 bits (85), Expect = 1.83241e-12 Query: 329 TCMXLXVVVGTCTXKVEEEISLVV 400 | ||||
Oall_contig15641_v2 | 9.1238e-11 | 85.19% | ||
Oall_contig15641_v2 | ||||
HSP 1 Score: 53.3031 bits (110), Expect = 9.1238e-11 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 30.8509 bits (61), Expect = 9.1238e-11 Query: 115 TCTHMVVVVGTCTSMLVV 168 | ||||
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Blast Hits to Contig V2 RO454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
RO454_contig27408_v2 | 4.54306e-16 | 88.89% | ||
RO454_contig27408_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 4.54306e-16 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 38.6404 bits (78), Expect = 4.54306e-16 Query: 121 TCTHMVVVVGTCTSML 168 HSP 3 Score: 25.3524 bits (49), Expect = 4.54306e-16 Query: 497 CTRKVEEEIFL 529 | ||||
RO454_contig17513_v2 | 8.10054e-14 | 77.78% | ||
RO454_contig17513_v2 | ||||
HSP 1 Score: 48.721 bits (100), Expect = 8.10054e-14 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 45.9718 bits (94), Expect = 8.10054e-14 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 3 Score: 49.1792 bits (101), Expect = 1.13744e-11 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 4 Score: 38.1822 bits (77), Expect = 1.13744e-11 Query: 116 TTNILVQVPTTTTICVQV 169 HSP 5 Score: 45.9718 bits (94), Expect = 1.57235e-11 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 6 Score: 40.9315 bits (83), Expect = 1.57235e-11 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 | ||||
RO454_contig15020_v2 | 5.16276e-13 | 85.19% | ||
RO454_contig15020_v2 | ||||
HSP 1 Score: 53.3031 bits (110), Expect = 5.16276e-13 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 38.6404 bits (78), Expect = 5.16276e-13 Query: 121 TCTHMVVVVGTCTSML 168 | ||||
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Blast Hits to Contigs V2 WO454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig10662_v2 | 1.24002e-12 | 88.46% | ||
WO454_contig10662_v2 | ||||
HSP 1 Score: 53.3031 bits (110), Expect = 1.24002e-12 Query: 329 MSTCMXLXVVVGTCTXKVEEEISLVV 406 HSP 2 Score: 35.8912 bits (72), Expect = 1.24002e-12 Query: 115 HMVVVVGTCTSMLVV 159 HSP 3 Score: 46.43 bits (95), Expect = 1.73486e-11 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 4 Score: 30.8509 bits (61), Expect = 1.73486e-11 Query: 124 TCTHMVVVVGTCTSM 168 HSP 5 Score: 25.3524 bits (49), Expect = 1.73486e-11 Query: 497 CTRKVEEEIFL 529 HSP 6 Score: 47.8046 bits (98), Expect = 5.02105e-11 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 7 Score: 35.8912 bits (72), Expect = 5.02105e-11 Query: 116 TTNILVQVPTTTTIC 160 | ||||
WO454_contig19466_v2 | 1.46873e-12 | 70.37% | ||
WO454_contig19466_v2 | ||||
HSP 1 Score: 45.9718 bits (94), Expect = 1.46873e-12 Query: 330 TTREISSSTLXVQVPTTTXRXIQVLIP 410 HSP 2 Score: 44.1389 bits (90), Expect = 1.46873e-12 Query: 116 TTNILVQVPTTTTICVQV 169 HSP 3 Score: 45.9718 bits (94), Expect = 2.03083e-12 Query: 115 TCTHMVVVVGTCTSMLVV 168 HSP 4 Score: 43.6807 bits (89), Expect = 2.03083e-12 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 | ||||
WO454_contig15356_v2 | 7.67777e-12 | 88.89% | ||
WO454_contig15356_v2 | ||||
HSP 1 Score: 56.0524 bits (116), Expect = 7.67777e-12 Query: 329 GMSTCMXLXVVVGTCTXKVEEEISLVV 409 HSP 2 Score: 31.3091 bits (62), Expect = 7.67777e-12 Query: 121 TCTHMVVVVGTCTSML 168 | ||||
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