AC454_contig28796_v2

NameAC454_contig28796_v2
AccessionID2124366
Sequence
GATTACTAAGGGCGATCCTTTTAGTTGGGAGTGCTTTTAGTAAAATACAA
AGTAAGCTGTCACCAAGGAACTATATAGGCTTCACATCTCTAGCTGCACA
CTGCGTATCCCTGCAATTATATGATTTATTGGCRGCAAACACCCAATCTT
CTCTATCCTCMCCRTCAATTTGCACTTCACAAAGTTTATATTGATTTTGT
TCAAAGCTTTCTGACTTGTCAGTAGGYCACATCYAAAGACCRTTAACTAY
AAACTTAGACAAACTGTCAAAGCAGCAACTTGTGTCAGCATCACCCTATT
ACCATATATATACATACATACATACATACATATATATATATATATATATA
TATATATATGTATGTATATATATAtTATTTTTTTTAATTTTTAATTTCAT
CGTTTGTGGTTGAGAGAGGCAGCATTGGAAGCACAAGCATGTCCAGGGAT
GACTTAAAACAAGCTTCCATGCAAAACATATGGGTGGCAACCACAATATC
GATCTGAATTAGGGGACGTCTCCTCCTTCACTTGGTAATGGTTCCAAGGA
AGAATGAGGGATGCCTTCAGTTCCACTTTGACTC
Length584
Typecontig
Organism American Chestnut

[-] Collapse All

References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ACWP1_060754_2472_0326 0-254
EST ACCanker_161862_0590_1240 102-207
EST ACWP1_068881_2285_2764 193-407
microsatellite AC454_contig28796_v2-ssr310 309 329 0
microsatellite AC454_contig28796_v2-ssr330 329 359 0
EST ACHS2n_135525_3549_2899 332-584
microsatellite AC454_contig28796_v2-ssr365 364 374 0

InterProScan Analysis

Analysis Date: 11-03-2009 (Interpro: AC454_contigs_v2)
SEQUENCE: AC454_contig28796_v2_2_ORF2 CRC64: 3E8A991E87834DED LENGTH: 59 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_3_ORF1 CRC64: 4D994CD5C123D564 LENGTH: 63 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_3_ORF2 CRC64: 7E31B8A843E482FB LENGTH: 72 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_4_ORF2 CRC64: E6302F71E17D7581 LENGTH: 54 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_5_ORF2 CRC64: 7B4084E3A1F5AF37 LENGTH: 69 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_5_ORF3 CRC64: ADCDE40AA18CA3E3 LENGTH: 74 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_2_ORF2 CRC64: 3E8A991E87834DED LENGTH: 59 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_3_ORF1 CRC64: 4D994CD5C123D564 LENGTH: 63 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_3_ORF2 CRC64: 7E31B8A843E482FB LENGTH: 72 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_4_ORF2 CRC64: E6302F71E17D7581 LENGTH: 54 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_5_ORF2 CRC64: 7B4084E3A1F5AF37 LENGTH: 69 aa
No hits reported.
SEQUENCE: AC454_contig28796_v2_5_ORF3 CRC64: ADCDE40AA18CA3E3 LENGTH: 74 aa
No hits reported.

Blast Hits to Contigs V2 CC454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig16685_v28.57053e-1374.07%
CC454_contig16685_v2
HSP 1 
Score: 59.2598 bits (123), Expect = 8.57053e-13
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = -3
Query:  469 PWNHYQVKEETSPNSDRYCGCHPYVLH 549
            PWNHYQVKEE SPNSD+ CGCH +  H
Sbjct:  119 PWNHYQVKEEISPNSDQDCGCHLHYWH 199

HSP 2 
Score: 30.3927 bits (60), Expect = 8.57053e-13
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  546 ESKWN*RHPSFFL 584
            ES+WN*RHPSF L
Sbjct:   85 ESEWN*RHPSFSL 123

HSP 3 
Score: 55.1359 bits (114), Expect = 4.81866e-11
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  471 AKHMGGNHNIDLN*GTSPPSLGNGSKEE*G 560
            A + GGNHN+DLN G SPPSLGNGSKE  G
Sbjct:  108 ASNEGGNHNLDLNLGISPPSLGNGSKENEG 197

HSP 4 
Score: 28.5598 bits (56), Expect = 4.81866e-11
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  547 RKNEGCLQFHFD 582
            ++NEGCLQFH D
Sbjct:   87 KENEGCLQFHSD 122

Blast Hits to Contigs V2 CCall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig16567_v28.90108e-1374.07%
CCall_contig16567_v2
HSP 1 
Score: 59.2598 bits (123), Expect = 8.90108e-13
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = -3
Query:  469 PWNHYQVKEETSPNSDRYCGCHPYVLH 549
            PWNHYQVKEE SPNSD+ CGCH +  H
Sbjct:  119 PWNHYQVKEEISPNSDQDCGCHLHYWH 199

HSP 2 
Score: 30.3927 bits (60), Expect = 8.90108e-13
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  546 ESKWN*RHPSFFL 584
            ES+WN*RHPSF L
Sbjct:   85 ESEWN*RHPSFSL 123

HSP 3 
Score: 55.1359 bits (114), Expect = 5.0045e-11
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  471 AKHMGGNHNIDLN*GTSPPSLGNGSKEE*G 560
            A + GGNHN+DLN G SPPSLGNGSKE  G
Sbjct:  108 ASNEGGNHNLDLNLGISPPSLGNGSKENEG 197

HSP 4 
Score: 28.5598 bits (56), Expect = 5.0045e-11
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  547 RKNEGCLQFHFD 582
            ++NEGCLQFH D
Sbjct:   87 KENEGCLQFHSD 122

tags