AC454_contig19775_v2

NameAC454_contig19775_v2
AccessionID2080856
Sequence
TGACATGGCAGCCATCAAGTGCAATGGAAGGGAAGCAGTAACCAACTTTG
AGCCAAGCACCTATGAAGGGGAGATCATTKTAGAtTGGCAATACTCAAGG
AAATGGCCACAATCTTGATCTAAGCCTTGGGATATCTAATGGTTCAAAGG
GCAAGGACAATGCAGGGGATTGTCTTTCTCGTTGCAATAGAGAGAGATTA
ATGGTTGATAACTCTGCTTCTGCACCACTGGGTGTCAACCC
Length241
Typecontig
Organism American Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ACHS2n_132401_3255_2070 0-241
EST ACCanker_216271_0234_1317 78-184

InterProScan Analysis

Analysis Date: 11-03-2009 (Interpro: AC454_contigs_v2)
SEQUENCE: AC454_contig19775_v2_3_ORF2 CRC64: 51D5CB61B9027240 LENGTH: 52 aa
No hits reported.
SEQUENCE: AC454_contig19775_v2_3_ORF2 CRC64: 51D5CB61B9027240 LENGTH: 52 aa
No hits reported.

Blast Hits to Contigs V2 CC454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig16685_v24.32237e-1589.29%
CC454_contig16685_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 4.32237e-15
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 2
Query:    2 DMAAIKCNGREAVTNFEPSTYEGEIIXD 85
            D AAIKCNGREAVTNFEPSTYEGE+I D
Sbjct:  198 DKAAIKCNGREAVTNFEPSTYEGEMISD 281

HSP 2 
Score: 30.3927 bits (60), Expect = 4.32237e-15
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3
Query:   90 NTQGNGHNLDLSLGISNGSKG 152
            + +G  HNLDL+LGIS  S G
Sbjct:  132 SNEGGNHNLDLNLGISPPSLG 194

HSP 3 
Score: 51.0121 bits (105), Expect = 5.00881e-11
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = -2
Query:    1 SXMISPS*VLGSKLVTASLPLHLMAAMS 84
            S +ISPS VLGSKLVTASLPLHL+AA+S
Sbjct:  199 SDIISPSYVLGSKLVTASLPLHLIAALS 282

HSP 4 
Score: 29.0181 bits (57), Expect = 5.00881e-11
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = -1
Query:   89 LPFEPLDIPRLRSRLWPFP*VL 154
            LP E  DIP+ RSRLW  P +L
Sbjct:  130 LPSEGGDIPKFRSRLWLPPSLL 195

CC454_contig23853_v24.3091e-1189.29%
CC454_contig23853_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 4.3091e-11
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 2
Query:    2 DMAAIKCNGREAVTNFEPSTYEGEIIXD 85
            D AAIKCNGREAVTNFEPSTYEGE+I D
Sbjct:   18 DKAAIKCNGREAVTNFEPSTYEGEMISD 101

Blast Hits to Contigs V2 CCall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig16567_v24.485e-1589.29%
CCall_contig16567_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 4.485e-15
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 2
Query:    2 DMAAIKCNGREAVTNFEPSTYEGEIIXD 85
            D AAIKCNGREAVTNFEPSTYEGE+I D
Sbjct:  198 DKAAIKCNGREAVTNFEPSTYEGEMISD 281

HSP 2 
Score: 30.3927 bits (60), Expect = 4.485e-15
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3
Query:   90 NTQGNGHNLDLSLGISNGSKG 152
            + +G  HNLDL+LGIS  S G
Sbjct:  132 SNEGGNHNLDLNLGISPPSLG 194

HSP 3 
Score: 51.0121 bits (105), Expect = 5.19726e-11
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = -2
Query:    1 SXMISPS*VLGSKLVTASLPLHLMAAMS 84
            S +ISPS VLGSKLVTASLPLHL+AA+S
Sbjct:  199 SDIISPSYVLGSKLVTASLPLHLIAALS 282

HSP 4 
Score: 29.0181 bits (57), Expect = 5.19726e-11
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = -1
Query:   89 LPFEPLDIPRLRSRLWPFP*VL 154
            LP E  DIP+ RSRLW  P +L
Sbjct:  130 LPSEGGDIPKFRSRLWLPPSLL 195

CCall_contig23612_v24.47123e-1189.29%
CCall_contig23612_v2
HSP 1 
Score: 63.3837 bits (132), Expect = 4.47123e-11
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 2
Query:    2 DMAAIKCNGREAVTNFEPSTYEGEIIXD 85
            D AAIKCNGREAVTNFEPSTYEGE+I D
Sbjct:   18 DKAAIKCNGREAVTNFEPSTYEGEMISD 101

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