AC454_contig18089_v2

NameAC454_contig18089_v2
AccessionID2070015
Sequence
CTCTGCTCAACATCCTCTCCTGCCTCTAATTGGTCTATTGAAGACACAAG
GAAAGCTCGTTGTAGTTGGTGCGCCAGAGAAGCCGCTTGAGTTACCAGTC
TTACCATTACTCATGGGTAAGCATATTAATTACAACTAACAATTGTTACA
TTTGAA
Length156
Typecontig
Organism American Chestnut

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References

Dababase Accession
GFF_source SeqManPro

ESTs in this contig

Type Feature Position
EST ACCanker_155294_1303_1504 0-90
EST ACCanker_239551_2267_2716 5-112
EST ACCanker_276668_1017_0498 51-156

Blast Hits to Contigs V2 AB454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_AB454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
AB454_contig3618_v25.32635e-1884.62%
AB454_contig3618_v2
HSP 1 
Score: 82.1702 bits (173), Expect = 5.32635e-18
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            PMS GKTG+SSGFSGAPT TSFPC FNRPIRGR GC AE
Sbjct:  174 PMSKGKTGSSSGFSGAPTITSFPCDFNRPIRGRIGCTAE 290

HSP 2 
Score: 74.8389 bits (157), Expect = 8.57792e-16
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = -1
Query:    1 GKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 105
            GKTG+SSGFSGAPT TSFPC FNRPIRGR GC AE
Sbjct:  382 GKTGSSSGFSGAPTITSFPCGFNRPIRGRIGCTAE 486

Blast Hits to Contigs V2 ABall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_ABall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
ABall_contig3695_v25.42568e-1884.62%
ABall_contig3695_v2
HSP 1 
Score: 82.1702 bits (173), Expect = 5.42568e-18
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            PMS GKTG+SSGFSGAPT TSFPC FNRPIRGR GC AE
Sbjct:  174 PMSKGKTGSSSGFSGAPTITSFPCDFNRPIRGRIGCTAE 290

Blast Hits to Contigs V2 CC454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CC454_contig48005_v21.93542e-2197.44%
CC454_contig48005_v2
HSP 1 
Score: 96.3747 bits (204), Expect = 1.93542e-21
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P SNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE
Sbjct:   86 PXSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 202

HSP 2 
Score: 86.7523 bits (183), Expect = 1.52545e-18
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 LCSTSSPASNWSIEDTRKARCSWCAREAA*VTSLTITHG 117
            LCSTSSPASNWSIEDTRKARC WC REA *VTSLTIT G
Sbjct:   86 LCSTSSPASNWSIEDTRKARCXWCTREAX*VTSLTITXG 202

HSP 3 
Score: 76.6717 bits (161), Expect = 1.6518e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = -2
Query:    3 AYP*VMVRLVTQAASLAHQLQRAFLVSSIDQLEAGEDVEQ 122
            ++P VMVRLVTQ ASL HQ QRAFLVSSIDQLEAGEDVEQ
Sbjct:   88 SFPXVMVRLVTQXASLVHQXQRAFLVSSIDQLEAGEDVEQ 207

CC454_contig15297_v21.30192e-1269.23%
CC454_contig15297_v2
HSP 1 
Score: 67.0494 bits (140), Expect = 1.30192e-12
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S  + G+SSGFSGAPT  S PC FNRPIRG+RGC AE
Sbjct:  912 PKSIEEIGSSSGFSGAPTIXSXPCXFNRPIRGKRGCXAE 1028

Blast Hits to Contigs V2 CCall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
CCall_contig33735_v22.00649e-2197.44%
CCall_contig33735_v2
HSP 1 
Score: 96.3747 bits (204), Expect = 2.00649e-21
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P SNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE
Sbjct:  110 PXSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 226

HSP 2 
Score: 81.712 bits (172), Expect = 5.20406e-17
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 LCSTSSPASNWSIEDTRKARCSWCAREAA*VTSLTITHG 117
            LCSTSSPASNWSIEDTRK RC WC REA *VTSL IT G
Sbjct:  110 LCSTSSPASNWSIEDTRKXRCXWCTREAX*VTSLXITXG 226

HSP 3 
Score: 72.0897 bits (151), Expect = 4.10173e-14
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = -2
Query:    3 AYP*VMVRLVTQAASLAHQLQRAFLVSSIDQLEAGEDVEQ 122
            ++P VM RLVTQ ASL HQ QR FLVSSIDQLEAGEDVEQ
Sbjct:  105 SFPXVMXRLVTQXASLVHQXQRXFLVSSIDQLEAGEDVEQ 224

CCall_contig4088_v29.82453e-1369.23%
CCall_contig4088_v2
HSP 1 
Score: 67.5076 bits (141), Expect = 9.82453e-13
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S  + G+SSGFSGAPT  S PC FNRPIRG+RGC AE
Sbjct:  393 PKSIEEIGSSSGFSGAPTIXSLPCXFNRPIRGKRGCXAE 509

CCall_contig32369_v21.8543e-1269.23%
CCall_contig32369_v2
HSP 1 
Score: 66.5912 bits (139), Expect = 1.8543e-12
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S  + G+SSGFSGAPT  S PC FNRPIRG+RGC AE
Sbjct:   50 PKSIEEIGSSSGFSGAPTIMSLPCDFNRPIRGKRGCTAE 166

Blast Hits to Contig V2 Oall

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
Oall_contig15357_v24.7416e-1989.74%
Oall_contig15357_v2
HSP 1 
Score: 88.127 bits (186), Expect = 4.7416e-19
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            PMS GKTGNSSGFSGAPT TSFPC FNRPIRGRRGC AE
Sbjct:  261 PMSKGKTGNSSGFSGAPTITSFPCDFNRPIRGRRGCIAE 377

HSP 2 
Score: 72.5479 bits (152), Expect = 2.32112e-14
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 LCSTSSPASNWSIEDTRKARCSWCAREAA*VTSLTITHG 117
            LC  S PASNWS+E TRKAR  WC REAA*+TSL+ THG
Sbjct:  261 LCYASPPASNWSVEVTRKARYGWCTREAA*ITSLSFTHG 377

Oall_contig4423_v21.22978e-1476.92%
Oall_contig4423_v2
HSP 1 
Score: 73.4643 bits (154), Expect = 1.22978e-14
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S GK G+SSGFSGAPT  S PC FNRPIRGRRGC AE
Sbjct:  333 PKSIGKIGSSSGFSGAPTIMSLPCDFNRPIRGRRGCTAE 449

Oall_contig24604_v28.26868e-1471.79%
Oall_contig24604_v2
HSP 1 
Score: 70.715 bits (148), Expect = 8.26868e-14
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S  + G+SSGFSGAPT  S PC FNRPIRGRRGC AE
Sbjct:  153 PKSKAEVGSSSGFSGAPTIMSLPCDFNRPIRGRRGCTAE 269

Blast Hits to Contig V2 RO454

Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Match Name E value Identity
RO454_contig20716_v23.04514e-1989.74%
RO454_contig20716_v2
HSP 1 
Score: 88.127 bits (186), Expect = 3.04514e-19
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            PMS GKTGNSSGFSGAPT TSFPC FNRPIRGRRGC AE
Sbjct:  179 PMSKGKTGNSSGFSGAPTITSFPCDFNRPIRGRRGCIAE 295

HSP 2 
Score: 72.5479 bits (152), Expect = 1.49067e-14
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 LCSTSSPASNWSIEDTRKARCSWCAREAA*VTSLTITHG 117
            LC  S PASNWS+E TRKAR  WC REAA*+TSL+ THG
Sbjct:  179 LCYASPPASNWSVEVTRKARYGWCTREAA*ITSLSFTHG 295

RO454_contig13440_v22.59891e-1369.23%
RO454_contig13440_v2
HSP 1 
Score: 68.424 bits (143), Expect = 2.59891e-13
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = -1
Query:    1 PMSNGKTGNSSGFSGAPTTTSFPCVFNRPIRGRRGC*AE 117
            P S  + G+SSGFSGAPT    PC FNRPIRGRRGC AE
Sbjct:  132 PKSKAEVGSSSGFSGAPTIMXLPCDFNRPIRGRRGCTAE 248

tags