AC454_contig12085_v2
| Name | AC454_contig12085_v2 |
|---|---|
| Accession | ID2010618 |
| Sequence | ACTCATTCAAGAACACCCCCCCACCCCCCTTCTCAGTCCACTATTTTGTA |
| Length | 282 |
| Type | contig |
| Organism | American Chestnut |
[-] Collapse All
References
| Dababase | Accession |
|---|---|
| GFF_source | SeqManPro |
Loading...
Alignment Viewer
ESTs in this contig
| Type | Feature | Position |
|---|---|---|
| EST | ACHS1n_110324_2719_0844 | 0-250 |
| EST | ACHS1n_023467_2747_1733 | 49-282 |
| EST | ACHS1n_161912_2845_3282 | 49-282 |
InterProScan Analysis
Analysis Date: 11-03-2009
(Interpro: AC454_contigs_v2)
| ||||||||||||||||||||||||
Loading...

Blast Hits to Contigs V2 CC454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CC454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CC454_contig6288_v2 | 8.47398e-48 | 91.67% | ||
CC454_contig6288_v2 | ||||
HSP 1 Score: 185.725 bits (399), Expect = 8.47398e-48 Query: 31 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDSYVTLALELEELGXKHMTF*ISLRLRMTS*LMHTYF*MSLCIXYLQNSGLR 282 HSP 2 Score: 182.976 bits (393), Expect = 5.80513e-47 Query: 32 LSPLFCK*XIHNDIQKYVCIN*LVILSLREIQNVICFXPSSSSSKARVT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 HSP 3 Score: 180.227 bits (387), Expect = 3.90319e-46 Query: 30 FSVHYFVSKXYTMTFKNMYASIN*SF*A*EKFKMSYVSSQALPAPKQG*HNYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 4 Score: 174.27 bits (374), Expect = 2.3793e-44 Query: 32 *PMPFLN*DRMEVCIFI*VWSFL*IYIYR**R*LCHPCFGAGRAWDETYDILNFS*A*ND*LIDAYIFLNVIVYXLLTK*WTE 280 HSP 5 Score: 173.812 bits (373), Expect = 3.33045e-44 Query: 31 SQSTIL*VXNTQ*HSKICMHQLTSHSKPKRNSKCHMFXPKLFQLQSKGDITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 6 Score: 154.567 bits (331), Expect = 2.03065e-38 Query: 30 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIVMSPLLWSWKSLGXNI*HXXXXXXXXXLVN*CIHIFECHCVXFTYKIVD*E 281 | ||||
Loading...

Blast Hits to Contigs V2 CCall
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_CCall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
CCall_contig21788_v2 | 8.79281e-48 | 91.67% | ||
CCall_contig21788_v2 | ||||
HSP 1 Score: 185.725 bits (399), Expect = 8.79281e-48 Query: 31 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDSYVTLALELEELGXKHMTF*ISLRLRMTS*LMHTYF*MSLCIXYLQNSGLR 282 HSP 2 Score: 182.976 bits (393), Expect = 6.02355e-47 Query: 32 LSPLFCK*XIHNDIQKYVCIN*LVILSLREIQNVICFXPSSSSSKARVT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 HSP 3 Score: 180.227 bits (387), Expect = 4.05005e-46 Query: 30 FSVHYFVSKXYTMTFKNMYASIN*SF*A*EKFKMSYVSSQALPAPKQG*HNYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 4 Score: 174.27 bits (374), Expect = 2.46883e-44 Query: 32 *PMPFLN*DRMEVCIFI*VWSFL*IYIYR**R*LCHPCFGAGRAWDETYDILNFS*A*ND*LIDAYIFLNVIVYXLLTK*WTE 280 HSP 5 Score: 173.812 bits (373), Expect = 3.45576e-44 Query: 31 SQSTIL*VXNTQ*HSKICMHQLTSHSKPKRNSKCHMFXPKLFQLQSKGDITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 6 Score: 154.567 bits (331), Expect = 2.10705e-38 Query: 30 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIVMSPLLWSWKSLGXNI*HXXXXXXXXXLVN*CIHIFECHCVXFTYKIVD*E 281 | ||||
Loading...

Blast Hits to Contig V2 Oall
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_Oall_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
Oall_contig13465_v2 | 1.22879e-29 | 85.29% | ||
Oall_contig13465_v2 | ||||
HSP 1 Score: 77.5882 bits (163), Expect = 1.22879e-29 Query: 181 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDS 282 HSP 2 Score: 58.3434 bits (121), Expect = 1.22879e-29 Query: 20 S*A*ND*LIDAYIFLNVIVYXLLTK*WTEKGGG 118 HSP 3 Score: 22.6031 bits (43), Expect = 1.22879e-29 Query: 2 GGGVFLNE 25 HSP 4 Score: 70.2568 bits (147), Expect = 1.55114e-28 Query: 173 VT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 HSP 5 Score: 60.1762 bits (125), Expect = 1.55114e-28 Query: 20 PTPLLSPLFCK*XIHNDIQKYVCIN*LVILSLR 118 HSP 6 Score: 24.436 bits (47), Expect = 1.55114e-28 Query: 3 SFKNTPPP 26 HSP 7 Score: 69.7986 bits (146), Expect = 8.45756e-26 Query: 180 NYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 8 Score: 60.1762 bits (125), Expect = 8.45756e-26 Query: 4 HSRTPPHPPSQSTIL*VXNTQ*HSKICMHQLTSHSKPKR 120 HSP 9 Score: 66.5912 bits (139), Expect = 7.57638e-25 Query: 178 ITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 10 Score: 60.1762 bits (125), Expect = 7.57638e-25 Query: 21 PPPFSVHYFVSKXYTMTFKNMYASIN*SF*A*E 119 HSP 11 Score: 67.0494 bits (140), Expect = 1.22213e-23 Query: 180 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIV 281 HSP 12 Score: 55.5941 bits (115), Expect = 1.22213e-23 Query: 19 LRLRMTS*LMHTYF*MSLCIXYLQNSGLRRGVG 117 HSP 13 Score: 60.6344 bits (126), Expect = 1.05812e-19 Query: 179 MPFLN*DRMEVCIFI*VWSFL*IYIYR**R*L 274 HSP 14 Score: 48.721 bits (100), Expect = 1.05812e-19 Query: 24 VN*CIHIFECHCVXFTYKIVD*EGG 98 | ||||
Oall_contig21318_v2 | 1.29002e-23 | 91.11% | ||
Oall_contig21318_v2 | ||||
HSP 1 Score: 105.081 bits (223), Expect = 1.29002e-23 Query: 148 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDSYVTLALELEEL 282 HSP 2 Score: 98.6658 bits (209), Expect = 1.10073e-21 Query: 150 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIVMSPLLWSWKS 281 HSP 3 Score: 98.2075 bits (208), Expect = 1.54075e-21 Query: 150 ALPAPKQG*HNYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 4 Score: 95.9165 bits (203), Expect = 7.54058e-21 Query: 148 KLFQLQSKGDITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 5 Score: 94.5419 bits (200), Expect = 1.91907e-20 Query: 149 MPFLN*DRMEVCIFI*VWSFL*IYIYR**R*LCHPCFGAGRA 274 HSP 6 Score: 94.5419 bits (200), Expect = 1.95528e-20 Query: 149 SSSSSKARVT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 | ||||
Loading...

Blast Hits to Contig V2 RO454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_RO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
RO454_contig9006_v2 | 7.78649e-30 | 85.29% | ||
RO454_contig9006_v2 | ||||
HSP 1 Score: 77.5882 bits (163), Expect = 7.78649e-30 Query: 181 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDS 282 HSP 2 Score: 58.3434 bits (121), Expect = 7.78649e-30 Query: 20 S*A*ND*LIDAYIFLNVIVYXLLTK*WTEKGGG 118 HSP 3 Score: 22.6031 bits (43), Expect = 7.78649e-30 Query: 2 GGGVFLNE 25 HSP 4 Score: 70.2568 bits (147), Expect = 9.81886e-29 Query: 173 VT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 HSP 5 Score: 60.1762 bits (125), Expect = 9.81886e-29 Query: 20 PTPLLSPLFCK*XIHNDIQKYVCIN*LVILSLR 118 HSP 6 Score: 24.436 bits (47), Expect = 9.81886e-29 Query: 3 SFKNTPPP 26 HSP 7 Score: 69.7986 bits (146), Expect = 5.26072e-26 Query: 180 NYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 8 Score: 60.1762 bits (125), Expect = 5.26072e-26 Query: 4 HSRTPPHPPSQSTIL*VXNTQ*HSKICMHQLTSHSKPKR 120 HSP 9 Score: 66.5912 bits (139), Expect = 4.71253e-25 Query: 178 ITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 10 Score: 60.1762 bits (125), Expect = 4.71253e-25 Query: 21 PPPFSVHYFVSKXYTMTFKNMYASIN*SF*A*E 119 HSP 11 Score: 67.0494 bits (140), Expect = 7.60667e-24 Query: 180 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIV 281 HSP 12 Score: 55.5941 bits (115), Expect = 7.60667e-24 Query: 19 LRLRMTS*LMHTYF*MSLCIXYLQNSGLRRGVG 117 HSP 13 Score: 60.6344 bits (126), Expect = 6.58532e-20 Query: 179 MPFLN*DRMEVCIFI*VWSFL*IYIYR**R*L 274 HSP 14 Score: 48.721 bits (100), Expect = 6.58532e-20 Query: 24 VN*CIHIFECHCVXFTYKIVD*EGG 98 | ||||
Loading...

Blast Hits to Contigs V2 WO454
Analysis Date: 11-03-2009 (Blast: AC454_contigs_v2_vs_WO454_contigs_v2)
Best 10 Hits Shown
Note: Click a description for more details.
Best 10 Hits Shown
Note: Click a description for more details.
| Match Name | E value | Identity | ||
|---|---|---|---|---|
WO454_contig9404_v2 | 5.98858e-24 | 91.11% | ||
WO454_contig9404_v2 | ||||
HSP 1 Score: 105.081 bits (223), Expect = 5.98858e-24 Query: 148 NDRCHFLTKTGWKSASSSKYGHFCRFIYTGDSDSYVTLALELEEL 282 HSP 2 Score: 98.6658 bits (209), Expect = 5.10984e-22 Query: 150 MTDAIS*LRQDGSLHLHLSMVISVDLYIQVIAIVMSPLLWSWKS 281 HSP 3 Score: 98.2075 bits (208), Expect = 7.14771e-22 Query: 150 ALPAPKQG*HNYRYHLYI*IYRNDHT*MKMQTSILS*LRNGIGH 281 HSP 4 Score: 95.9165 bits (203), Expect = 3.49816e-21 Query: 148 KLFQLQSKGDITIAITCIYKSTEMTILR*RCRLPSCLS*EMASVI 282 HSP 5 Score: 94.5419 bits (200), Expect = 8.90877e-21 Query: 149 MPFLN*DRMEVCIFI*VWSFL*IYIYR**R*LCHPCFGAGRA 274 HSP 6 Score: 94.5419 bits (200), Expect = 9.07075e-21 Query: 149 SSSSSKARVT*LSLSPVYINLQK*PYLDEDADFHPVLVKKWHRS 280 | ||||
tags